RNA id: XM_043236418.1


Basic Information

Item Value
RNA id XM_043236418.1
length 5971
RNA type mRNA
GC content 0.49
exon number 29
gene id l1camb
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 25573077 ~ 25609845 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GAAGGGTGTGTTTCCCTCACTGCAGCATCCCAGCAGCCCTCACCCACCGGATGGGACGagcacagagacagagaaagagacggagAACAAGGCGTGTCACCGAAAGCCAGCAGAGACCAGCCAGACTTCTGCCCAAAACCAGCACTCTGCCTGTGAGGAAGCGGCAGAGATTGTCCGGACCCAGCTGTGTTTGCAGTGGCTGCTGGTTTGATGCAGAATGCCTCAAGTTCAGTGTCAGCCGGCCGGCAGAAGAGGACACATCAGGACACATCTGCATCTGCTGTTCCTCTTCCTCAGTGTGCTACAAATACAAGGATACATTACAATCCCTCCAGACTACACATATAACAACTTAAAACAAGCTCCAAAGATCACAGCTCAGCCCGTTTCTCACACCGCTTTCGCTCTGGATGATGTCAACCTGGCCTGTGAAGCCAGCGGAGACCCAGCTCCCAGTTTCCGCTGGGTCAAAGATGGCAAAGAGTTTAGGAGGGAACTGTATGAATCCGGGACCCTGATAGCAGATGATACGGAGGAGCTCCGGACCTATCAGGGTTCATACCGCTGCTATGTGGCCAATGAGCTGGGAACAGCCGTCTCAGACCTGGTGCACCTGATCACAGAGTCCATCCCAACCTTGGCCAAAGAGAAGAGGCAGAAAAGAAGATCGTTTGAGGAGGGAGAAAGCACAGTCCTCTACTGTAACCCTCCCAAGAGTTCTGTCACTCCCAAAATACACTGGATGGACATGCAGCTGCGCCACATCCCTCTGAACAAGCGTGTGACCACCAGTCTTGATGGAAATCTGCACTTTGCCAACTTACTAGTGAGTGACAACAGAGAAGACTACACCTGCAACGCTCACTACATCAACGCCAGCGTCATCCTCCCTAAAGAACCCATCTCCATCAGCGTCACGCCCTCAAATTCTGTGGTGAAGAACCGGCGGCCCCAGCTTCAGAAGCCCGCAGGCTCCCACAGCTCTTACCTGGTGCTCAGGGGCCAAACGCTGACTCTAGAGTGCATCCCCGAAGGCCTCCCCACTCCAGAGGTGCAGTGGGAGCGGATGGACAGTCCTTTGTCCCCTGCACGGGCCCAGACGCTGAACTACGGCCGCTGGCTCCAGATCCAGAGCGTGTCGGAGATGGATGACGGCGAGTACACATGCACTGCCCAGAATAGCCAGGGCTCCGTCAAACACCACTACGCTGTCACGGTGGAGGCTGCTCCGTATTGGACCAGGCGTCCGGAGGACCACCTGTACGCCCCGGGAGAGATGGTGAAGCTGGACTGTCAGGCAGAGGGAATCCCGACCCCGAACATCAGCTGGAGCATCAACGGCGTTCCCATCGCAGGGACGGACTCGGACCCGAGACGTCATGTGAGTTCAGGGACACTGATCCTGACCAATGTTCAATACAGCGATACAGCCGTCTATCAGTGCGAGGCCGCCAATAAACACGGCAATATCCTGGTCAACACACATGTCCATGTAGTTGAGCTGCCTCCTCAGATCCTGACGGCGGACGAGCTGCAGTACCAGGCCACAGAAGGACAAACCGTTCTGCTGCTGTGTCGAACGTTTGGCTCCCCACTACCTAAAGTCGAATGGGAGATCTTAAACTCTGGACCAGCTCTGGCCAATGCTAAAATGTCTCAGACGAGCGATGGAAACCTTCAGATCAGTGATGTGACTGAAGATGACAGCAGCATTTACACATGCTCAGTGAAACACAGCAACAAGAGCATCAATGCTGAGCTGGATGTCTTGAACAGAACTAAGATTGTGGAGTCTCCTCAGGATCTGCGGGTTTTACGTGGAGACGATGCTGTTTTACAGTGCAAATATACAGTGGACCACAAGTTAAAACAACCCACAATTCAGTGGAAGAAGGACAAACACAAGCTCACATCCTCTGCTAATGATGACAAGTACACTGAATACCCAGATGGCTCTCTGAAGATCACTGATGTTCGTATGGAGGACTCGGGGGTCTACAGCTGTGAGATCAGCACTAAACTGGACTCGGTCAGTGCCACCGGCTCCATCACGGTACAGGATAAGCCGGCTTCTCCTCACTCTCTGGAGCTGTCTGAGAAGAAGGAGCGTAGAGTCACGCTGTCCTGGATGCCAGGCGCTGAAAACAACAGTCCTGTATCTGAGTTTGTTATTGAAAAGAAGGAGGAGCATAATCCAGACAAGGGCCACTGGGAGGAGTACAGAAGAGTCGCTCAAGACGTCAGACACCTGGAGATCCACCTGCAGCCGTACAGCACATATCACTTCCGGGTCAGAGCGGTCAATGCAATAGGAATGAGCGAGTTCAGTCCTCCCTCAGACTCTTACAGCACACCAGCAGCCAAACCTGACAAGAACCCAGAGAACGTGACGACGGTGTCTACTGATCCCGACACTATGGTCATTTCATGGCAGGAACTGGAGCGACGACAATATAACGGGCCAGAATTTAAGTACAAGATCTACTGGCGTCAAGCTTCTGGCAGGAGCCCACACTGGAAGGAAAGCAGTGCCTCCAATCCTCCGTTCATCGTGAACGGCACCGGGACCTTCATCCCCTTCGAGATTAAAGTTCAGGCTGTCAATGAGCTTGGAGCAGGACCGGAACCAGATGCTGAGATCGGCTACTCGGGGGAAGACTTACCTCTGGAAGCTCCTTCAGATGTAGCAGTGACCGAGCTGAACAAAACTGCTGTCCTGGTGAGATGGAGTCCAGTCACCATGGAGTCTGTCCGCGGACACTTACTCGGCTACAAGaTCCATCTGAGAAAGAAAGGCCCCAGAAGTCGCAGCCGAAGAGGCCTGCCGGTGCAAGAACCAGAGGTGAACAGGAACAGAGTCATTGTGGTTCATGGAGATAAAGTGGAGACGATCGTGAGCGACTTGCAGTTTTACTCGAACTATACTTTGACAGTTGCACCTTTCAACAGCAAAGGTGAAGGTCCACATTCAAAGGCGTATCACTTTAGCACTCCGGAGGGCGCTCCCGGACCAGTTTCGTCCCTGACCTTCGAGAGCCCATCTGAGACGGAGATCACCCTGAGCTGGAAAGCTCCGGACAAACCCAACGGAGTGCTCACAGGCTACCTGCTACAGTACTATGAACCTGTGCCTGGAGTTTCGAGCACACAGCTGATGGAGTCCCTCAACCTGCCCCCTGTTACTGAGTTCACACTGAAGAACCTGAACCCTCAGATCCATTACCACTTCAAACTCAGAGCAATCACGTCCGCTGGTGATGGGGAGCCTATAGAAATGGAGGGCGCCACCTTGTTGGATGGAGAACCACCATCTGCAATCGACATCGAAGCTGGACAAACATCAGTTAATTTCAGTTGGGTGCCAGGAGAAAGACAGCGGAACTTTGCCTTTAGCTTCCGTTACCTGAAAAAAAGCGAGGGTGGTACGTGGGAAGAGTCGGAGAAGATCAACTCCTCGCAGGCGTTCTATCAGCTGCAGGGTCTGACGCCGGGCGTTCAGTACCACCTGCAGGTCCTGCCCGGAAACAGCTCCTGGGAATTCAAAACGGCTGGGCCAGAGCTGCATGAGTTGCCCAGCAGCTTTGCGACTCAGGGCTGGTTCATCGGACTCATCAGCGCCATGGTTCTTCTGCTGCTGGTGCTGCTCGTTCTGTGCTACATCAAGAAGAGCAAGGGAGGGAAGTACTCAGTAAAAGATAAGGAGGAGGATCAGGTCAATGGGGCCCGCACCATGAAAGATGGAGAGTTTGGGGAGTACAAatcTCTGGAGAGTGATAACGAGAAGTGCTCCATCAGTCAGCAGTCGGTCTGCGAGAGCAAGCGCAGCAGCAACGACAGTCTAGCCGACTACGGAGACAGCGTCGACATCCAGTTCAACGAAGACGGCTCCTTCATCGGCCAGTACAGCGGACGCAGAGAACCTAACGGTCACGGCACTCACGCCAGCTCGGGCGCCACGTCTCCCATCAATCCCAACATGCCTCCGCCCAGCATCAGCTTTCCCACGTCTGTGACAGGATTCCTGGGGCCAAACTAACGCTCCACCGCCACACGCACACATCCTTGACCATTTGAATGAGAGGCCCTGATGGTATTAGACAGGATATTGATTTCATGACAGACAGTCGCAAGAAATGACATCCGCAAACACCGCCAGCTTCACTCTCGCATAACAACGACACACGTGCATCCGACAGACACGAATAAGTCCAGGACAGTTGCTTCTAACATTCCATCCAAGCACTGAAAACTGTTTACAATGTTCAGTTCGCTGCTTCCAGTGATGTTTGGACTGTAAATTCTCCCTCGCTGAAATTACGCAGAAGAAGGTGCGAGAAACGACAGACAGAGTGTAGGGCAGACTTGGGCCTTGTTCAGGTGGCAGAGGAGATCTGTAGGAGTGGCGTAGTCAGTATTTCAGTCAGTACAGGCTAAGATGCATTTCCCAGAACAAACCGATTTTGCTGCCTCTCTGAACAATGCCTTACGTGGAATACATCGGTTCAAATCACTGCAGTCAATAGAAGTCAGGTCTTTAAGGCTGAAAAGCGAAAATCTTTTTTAGGCATTCTTTTCCCATTCACGATTACGTTATTTGaagtattgtttttgtattattcttATACTTCTCttcttattagtttttttaatatatgaaatacatgtgtatatacatttttttttttcataaaggctaatatatttggtttatattatcatatgatttatttaattattattatttttgttttgcctgtaatgcatttatctttatgaattcatgttttataaaacGGTATGTATGAACATTAATAATCTGCcatgtgtgtctctctgtcttaaTAATCAAAGTTCAGGGCTTTTAACTGTGTATCGTTTGTATTGTTGCCCAAGTGTGTTACCCAAGTAAGTTTTTCAAATAATGGTGTTTTTGATGCAATTTATTACGTTAAATCCCTTTGAAGTACATACAGCCGCTGCAGTAAAGCCAAATTTTGTCGATCTTGACactaacatatatttttaaaagaaaaaaagaaaaaacagcaacaaaaactgATTTCCTGCAGCAAATAACAGCATGAGATGTAGTGCTAGGCTAGTTGATGTCGTGTGAGGCAGTGTCATCCGTCCGGCAGCTTGCGAATATTAACACTCAAACATGGCCAATTATGTACAGTGAATTATTACTAACAATAACAGTCGTACAGTATAATCTATCGCATTTGTCTCGTCGTCCGAGAGAACAAGCTGAATGTAAGTCATCTTttctttagtttgtttttgcatctaacatctttattattagatttagtGGTATTATAATGCTTAATCTGATCTTTAGTTTAGAAAACAGGTCAGaagtaaaatgcaattttttatgGGACTTCTGAATGATTATATCGTTGTGGATTTCATTAAGTGCGTTTTTTTGGTGGGGGTTGGGGGGTGTCAGTGATGATGTCATGATGGGCCTGCAGTTTGCCGACATCATCGCGTCTGTGACGTAATTACGGCTTTGAGTTAACTCATCTGTCTTCTCTCGCATACGCCACAGCATCCTGAATTGTACTGATCAAATTCATGCTGCAAACGCCTGGTTAAAATCAGATTAAATACTAGgaatatttacaacaaatgtATGTAAGAGTATGTAGCCTGTGTACGCATTAAAATCTATTTTCCTACAAGAAGGACTTGAGCTAAGCGGGTGGGATTGCAGTGCATGGCTTTATAAGATCCTGAAGCACGTCACCATCCCTCCCGGCTCTGTGGGATATCTCCATACTGTATGTAAGCTTCTTCTTACCTCTGCTTTCTATTTGTAAATCCAAACactaaaatgagaataaaaatgtaGTCAGAGTGGTATTTGAAAGCACCGCAGCCTGTGTGAGTGATCTCTGAGTTCTGAGAGACGCCGGTGCCATCCAGATACAACCAAATAAAATCACATCGATTATGCAGAAAA

Function

GO:

id name namespace
GO:0031103 axon regeneration biological_process
GO:0007155 cell adhesion biological_process
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K06550 L1CAM, CD171; L1 cell adhesion molecule

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU46139 lncRNA upstream 257524 25315179 ~ 25315553 (+) True G31228
TU46137 lncRNA upstream 258481 25314223 ~ 25314596 (+) True G31226
TU46134 lncRNA upstream 583803 24988867 ~ 24989274 (+) True G31223
TU45676 lncRNA upstream 858079 24714697 ~ 24714998 (+) True G30877
TU45666 lncRNA upstream 899483 24672967 ~ 24673594 (+) False LOC122343086
TU46232 lncRNA downstream 70296 25680141 ~ 25685985 (+) True LOC122342771
TU46335 lncRNA downstream 177535 25787380 ~ 25787901 (+) True G31380
TU46346 lncRNA downstream 207186 25817031 ~ 25817455 (+) False G31388
TU46343 lncRNA downstream 207226 25817071 ~ 25817564 (+) True G31388
TU46344 lncRNA downstream 207226 25817071 ~ 25817455 (+) False G31388
XM_043236409.1 mRNA upstream 19244 25517396 ~ 25553833 (+) False zmp:0000000926
XM_043236415.1 mRNA upstream 19244 25517402 ~ 25553833 (+) False zmp:0000000926
XM_043236407.1 mRNA upstream 19244 25517406 ~ 25553833 (+) False zmp:0000000926
XM_043236414.1 mRNA upstream 19244 25517408 ~ 25553833 (+) False zmp:0000000926
XM_043236400.1 mRNA upstream 19244 25517531 ~ 25553833 (+) False zmp:0000000926
XM_043236244.1 mRNA downstream 21516 25631361 ~ 25634808 (+) True lsm14b
XM_043236866.1 mRNA downstream 25197 25635042 ~ 25685872 (+) False LOC122342771
XM_043236869.1 mRNA downstream 25197 25635042 ~ 25673445 (+) False LOC122342771
XM_043236868.1 mRNA downstream 25199 25635044 ~ 25685872 (+) False LOC122342771
XM_043236863.1 mRNA downstream 25200 25635045 ~ 25685872 (+) False LOC122342771
XR_006250558.1 other upstream 805525 24743848 ~ 24767552 (+) False LOC122342408
TU45681 other upstream 844630 24721424 ~ 24728447 (+) True G30882
TU45653 other upstream 926506 24640129 ~ 24646571 (+) True LOC122343125
TU45649 other upstream 934423 24636364 ~ 24638654 (+) False LOC122343159
XR_006250668.1 other upstream 1102210 24465454 ~ 24470867 (+) False LOC122343023
XR_006250648.1 other downstream 25197 25635042 ~ 25684620 (+) False LOC122342771
XR_006250647.1 other downstream 25200 25635045 ~ 25688230 (+) False LOC122342771
TU46238 other downstream 83957 25693802 ~ 25695381 (+) True G31298
TU46339 other downstream 202786 25812631 ~ 25813625 (+) True G31384
unassigned_transcript_386 other downstream 215266 25825111 ~ 25825192 (+) True trnas-uga

Expression Profile