RNA id: XM_043236421.1


Basic Information

Item Value
RNA id XM_043236421.1
length 2534
RNA type mRNA
GC content 0.50
exon number 15
gene id samhd1
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 25610615 ~ 25625124 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TACGCCGGTAACCCCGCCTTCACGCGCGCTCCACCCGACAGGCGGCGCGAACGGACGAACTTGGAGAAAAGCGCGAACCGCCGGCTCTCCGAGCGAAAGTGCCGTGTGTCCGTCTTCAGGAGTATTAAATAATGGACAGAGCCATCAAACGGCCACGAGAAGACGACTGTTTCGTGAACGAGAGGCAGGTTGTCGACGCGAACTTCAGGCGCTGGGGCGTCGCGGAGACCGGCGCGTTTCTCCGCAGAGAGGGGCTCCAGCAGTGGGAGCAGACTTTCAGAGaaaatggcATAACGGGGCCAGGGCTGCCATACCTCAGCGAGGCACTTCTGGAGAAGATGGGCATTTTACCCCTGGGCTCACGCCTGCAGGTCCTGCACTGTCTTCAGAAGCTCTGGCAGCTCTCAGATGAGTCCATGAAGGTGTTCAATGACCCCATCCATGGCCACATCGAGCTGCACCCACTGCTGCTGCGCTTCATCGACACGCCTCAGTTCCAGAGGTTGCGCCACATCAAGCAGCTGGGAGGAACATACCTGGTGTTCCCCGGGGCGTCCCACAACCGCTTCGAGCACTCCGTCGGgGTGGGATATCTGGCCGGATGTCTGGTCCAGGCACTCAATGAAAGACAGCCGGAGCTCCTCATAACGAAGCAGGATGTGCTGTGTGTGCAGATCGCAGGCCTGTGCCATGACTTGGgTCATGGCCCATTTTCTCACATGTTTGATGGCATGTTCATCCCTAAAGTTCGACCTGGTGAGAAATGGAAGCACGAGATGGCCTCGGTTCAGATGTTTGACCACCTGGTGAAGGTCAACGGTCTGGAGGAGGTCATGGTGCGCCATGGGCTGACTCTTCCTGACGACCTGATATTCATTAAGGAGCAGATTGCTGGGCCACTGGATACCTCTGTTTTGGACAGatcgTGGCCGTATAAGGGCAGGCCGATGGAGAAATCCTTCCTGTACGAGATAGTggcaaacaaaagaaatggTATTGATGTGGATAAGTGGGATTATTTTGCAAGGGACTGTTACCATCTCGGCATACAGAACAACTTTGACTACCAGCGCTTCCTCAAATTTGCTCGAGTGTGTGAAGTGAGAGGAAAGAAGCACATCTGCACCAGAGACAAGGAAGTTGGCAATCTCTACGACATGTTCCACACACGTAACTGCCTCCATCGCCGGGCGTACCAGCACAAAGTGGGCAACATCATTGAGACCATGATAACGGAGGCTTTTGTGAAAGCAGATCCTCATATTCAGATCCATGGCTCTTCAGGGAGGATCTTCACCATCTCTTCAGCTATAGAAGACATGGAGGCCTACACTAAACTCACAGATCACATATTTGAGCAGATTCTGTACTCGTCTTTGCCGGAGCTGTCCGAGGCACAAGCCATCCTGAACAACATTGTCTGTAGACGGCTGTACAAGTGTGTGGGGCAGACCACACCAGAGAACCACCTGGACGCCTCACCGGAGAAACTTCTGGACTGGGCAAAGGAAGTGGCCAGCTCAAAGCCCAATGGCATAGACGCTAACCTGATAGCAGAGGACTTTGTAGTTAGTGTCATTCACATGGATTATGGCATGAAGGATAAAAACCCCATCAACAATGTCCACTTTTACTGCAAGAAAGATCCTACCAAAGCCATCAAGATCTGCAAAAAACAGGTGTCCAAACTCCTGCCGGAGCGCTTCGCGGAGCAGCTGATCAGGGTTTACTGTAAGAAGACGGATGACAAGAGCCTGGAAGCTGCCAAGAAGTACTTTGTCCAGTGGTGCATGAACAGGGACTTCACCAAACCCCAGGATGGAGATGTCATCGCCCCTGAGCTCACCCCTCTCAAACGGGACTGGAACACGCCGGAGCAGGATGATGGCAGCGATGAAGACAGTCACCCTGGGACGAGAGAGCAGACGCCCAGAAAGACTGGGAATAACGTGAAGCGCAGACTCTGAGGCTCTCAGGATCTCACACCGCCTGCATGTTTCTCTGAGAACACTGCCTCtgcttgattttattttcagctttaatATCATGTTCACTGCCAGGGTTTTAATGCAACTCGCACCTCTGACACGGAGAAGCTTAATTATACATCAATCCAGAATGAACGTGTCTCTCCTGCATCCATCATGTTTCCATgcagaggatttttttttttttttattatttaaaactttttatcaGGGACTTGCTGTTACTTTTTTCCTTCTGTTGATCGGCCCTCCTTTCACTCAGCAGTGTTGTACACGCTCCTGGGTCAATCGGTCTCGAAGGTGATGgcattttatatatctatatttgagcactatataactatatttttaaacttcagCCTCTTTGTGTAAGTCAGGGGTGACTGCCTGGTTGTCTTGGATCTTCTCATTTTGTCTAGAAGTCACAGCACAATCACATCAAGAACATTTGAACAGAAAAAGGTTGCAGCTGTTATGTTGAACCAATGCAAAGTATCTGACAAGCCAgagaatgcaaataaaaattcaatcaTGCAGTCAGATCCA

Function

GO:

id name namespace
GO:0045088 regulation of innate immune response biological_process
GO:0051607 defense response to virus biological_process
GO:0005634 nucleus cellular_component
GO:0046872 metal ion binding molecular_function
GO:0003723 RNA binding molecular_function
GO:0008081 phosphoric diester hydrolase activity molecular_function

KEGG:

id description
K22544 SAMHD1; deoxynucleoside triphosphate triphosphohydrolase SAMHD1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU46175 lncRNA downstream 147071 25463153 ~ 25463544 (-) True G31253
TU46172 lncRNA downstream 173495 25436106 ~ 25437120 (-) True G31250
TU46148 lncRNA downstream 261970 25348374 ~ 25348645 (-) True G31237
TU46140 lncRNA downstream 295046 25315190 ~ 25315569 (-) True G31229
TU46136 lncRNA downstream 428271 25182013 ~ 25182344 (-) True G31225
TU46281 lncRNA upstream 9824 25634948 ~ 25635148 (-) True G31335
TU46297 lncRNA upstream 72306 25697430 ~ 25697757 (-) True G31351
TU46298 lncRNA upstream 77146 25702270 ~ 25703067 (-) True G31352
TU46336 lncRNA upstream 162256 25787380 ~ 25787875 (-) True G31381
TU46340 lncRNA upstream 187516 25812640 ~ 25813615 (-) True G31385
XM_043236417.1 mRNA downstream 43122 25554784 ~ 25567493 (-) False irf10
XM_043236416.1 mRNA downstream 43122 25554784 ~ 25567493 (-) True irf10
XM_043236135.1 mRNA downstream 113809 25487188 ~ 25496806 (-) True LOC122342354
XM_043236134.1 mRNA downstream 575941 25032134 ~ 25034674 (-) True LOC122342351
XM_043236132.1 mRNA downstream 628992 24963974 ~ 24981623 (-) True LOC122342349
XM_043236423.1 mRNA upstream 1483 25626607 ~ 25629375 (-) True mtg2
XM_043236862.1 mRNA upstream 61453 25686577 ~ 25695667 (-) True kcnk15
XM_043236266.1 mRNA upstream 102970 25728094 ~ 25741253 (-) False LOC122342461
XM_043236267.1 mRNA upstream 102970 25728094 ~ 25740913 (-) True LOC122342461
XM_043236861.1 mRNA upstream 116472 25741596 ~ 25761605 (-) True si:ch73-181d5.4
TU46256 other downstream 49417 25559040 ~ 25561198 (-) True G31314
XR_006250868.1 other downstream 223798 25386628 ~ 25386817 (-) True LOC122343881
XR_006250847.1 other downstream 224241 25386213 ~ 25386374 (-) True LOC122343859
XR_006250865.1 other downstream 225769 25384655 ~ 25384846 (-) True LOC122343878
XR_006250858.1 other downstream 226210 25384248 ~ 25384405 (-) True LOC122343871
unassigned_transcript_476 other upstream 356342 25981466 ~ 25981546 (-) True trnas-uga_31
unassigned_transcript_477 other upstream 359710 25984834 ~ 25984906 (-) True trnak-uuu_27
unassigned_transcript_478 other upstream 360841 25985965 ~ 25986045 (-) True trnas-uga_32
unassigned_transcript_479 other upstream 361181 25986305 ~ 25986386 (-) True trnas-aga_31
unassigned_transcript_480 other upstream 363486 25988610 ~ 25988691 (-) True trnas-uga_33

Expression Profile