RNA id: XM_043236424.1


Basic Information

Item Value
RNA id XM_043236424.1
length 3261
RNA type mRNA
GC content 0.42
exon number 9
gene id zgc:171422
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 15664443 ~ 15673234 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTCACTTGTTAGACGCATGCGCAGTGTGTAACGGAACGAGTCAACGGACGAAGTTGGAAACAAGACTGTTTGTGAAtccaaatatattcaaacaaagAAGCAATGGAGTCTGTCCCACCTCTCTCCTCACTTCGCTTGCTGGTTTCTCCCCTCCGCCTCACATCAGCCTTCATGTGGCAAGTTGTAAAGGATCAGAATGTGGAGCAGTTTGGAAAACTGGAAgaatttgtttctgtgatgacAAATCTTGTGCCAGAGCTCTTAAGTAGGAGGCAGAGAGCCACTTTGATAGTAGGGCTGCGGGCAAAGATGATTCTTGAGATGTGTCGAGGTGAACTCCCAGCAGACCTTCATACTGTCAAATCACACATTCACCAAATTCAGACTGCTGATTTATTAAAGGTGAGTGACGTAGACATGGAGAGTTTACAAGACAGCGTACTTCAACTTGTCCTGAGCTTGCTAGAGGACTCCATAAAAAGAGAATACTTCTTTAAGGAAGTCTTTCCAGTCGAGTACGGTCCCGACTTTGACAAAGCACTGCAAGTCCTTGTTGGATTTTTTCTCTCCAGATTGGAGCAACTTCTGCCTGTACCAAACTTCAAACAGCTCTCCTTGTTGCTCAGCTGTCACCCTGGGGAACTAGATGCATGTGTGGACTCGGTTTGTAAATCAAACCACTTGCTATCCTTGCTGCAGATGGATGTTGTTGGGACCTTggataaaaatgTTCTTCCATCAATAGTGGAAGATCGAATAGTGTCATCGTTGTCATTGCCACCTGTTGGTGACTCAGTCATTCTAAACCAGCACAACAATGATGGCACGTTACTGCCTATTGATTCTGAAAACCTGCCAAACCAACAACATGGTGTCAACAAGGAGATGGTGACAGGTGATCCAAACATCCAGAATGTGGGATCCAGCTTCAGCAGTGAGTCCTCGGAGTACTCTAGAGACAGTGATGGAGAAAAAGAAGCAAACTCTAATGTAGATGAATTGCAACGgaaTAATTTAGAAGACCCAAGTGCACCGTCATCCACCGATGACGCTCATAGAGGTGATTTGATTTTTCAGACAGCTGTGCCTCTCCAACGGCCCTCTCTTGACACCTTCCCAAGCACACCTTCCAAAGGCTTCCACTATGCAGGCAGGACTGTACATAAATGTCAGCAGTGTACAAAATACTTCATCTATCGCTCTGATCTTGTCAAACACCAGGAAATTCACACCCAGGCAGGGACCCATGAGTGTCCTCAGTGTGGGCAGGTTTTTGACGATTCAGCACAGCTGGTGTCACACAGGAGCACCAACTGCAATTCCAGAGTTTTTAAGTGCATCAAATGCACAGCCCACTTTAGATCCCTCAGGACCCTATACAGGCACAACCGAGTGCACAAAGAGAAAACCACACATAAGTGCCCTGAATGTGGACGGCTGTTCACAAGTCTGTCACGATTAGTTGGTCACCGGCGAACTCACCGAACTCCCTCTATTAAAAGGAACTACACCTGCAAACAATGCAATGAGACTTTCGGGTCATACAGAGCCAGTTTAATCCACCAGAAGATTCACAAAGTTAAAGATATCCGCCCGTCTAAACCAGAACGGCAGCCAGGAAAGTGTCGTTTTTGTGACTTGACATTCAATGTTGACAGCGAATTACGAAGCCATCTAAAGACCCATGCAGAGTTCAGGCCATATATATGCGACCAGTGTGGGAAGTGCTTTTCGGCAAACAGCAGCCTGCTTGCCCACCTCTCAAACCACACGGGTGAGAAACCCCTCCTTTGTTCGCAATGTGGAAAGCGATTTTACAGCAAAATCCAATTAAAATCCCACATGCGATGTCACTCTGGTGAGCGGCCGCACGTCTGTCCATACTGTGAGAAGCAGTTTTCACTGTCTGGGAACTTGAAGATCCACATCAGAATTCACACTGGGGAGAAGCCGTACATTTGCCATCAGTGCGGAAAGGGTTTTGTCTCTGCTGGATGCCTGCAGGTGCATTTGCGCTCTCACACAGGAGAGAAACCGTATCAATGTAAAATCTGTGGCAAGAAATTTGTGGTTTCGAGTCACCTGACAGCACACATGTGCTTTCACACCGGAGAGCGTCCCCACTCCTGCTTGCAATGTGGGAAACGATTCATCCGACGTTATGACTTGAGCAAGCACATGTACACTCATATTGGGAAAAGGCCTTTCCCGTGTCCTCTGTGCCCGAAGGCTTACACATGTCGTACACACCTAAATAGGCACATGAAGAGCCACAGTGCTTGACTTGAATTATTTTGTCATCCTGAGTGCCTTGTGTGGAGTGACATTAACCatctttaaagcaatagttcacccaaaaatttataatgtatataaaataaagaaaaaaacactgaaataacattatttactcCCCCTCATGATTCATGTCTAAACCCATATTCTGTTTTGTTCCTGTGGAACcgaaagacattttaaaagaatcatgATGTTTTTTCAATTGATAGTTCATTGtaagctttaaaaatgacaaaaaaagacagGATCGTATTAATCAAATAGTCCATACAGCTTATGTGCTATATTCCAAGTCTTGTGAAGTCGTATTGCTCATTTGTGCAAGTAACCAATTGAAATTGTTTTCATGCCCTTCTGCTGACGCTGTTAACTGGGACCGGATTGAGTCGACTAGTTGAGAACTGGATCAGTCTGATTTGTTAACCATATCATCTGATTCTATAAAACAATGTCTCAAGGACAAGATTTTAACAGCTTACTGAAGGGGAGAAGTAAAGCTAAATAACAATTTAAGTGTGCCCTGTTTCCCGCAACAAGCTgttattagacctcaaaatacTTGCAGACataagagtgagtaaataactaaaacatttttgatttggggtgaactatctcttttaattaaaaaatgtttccacTTTGTGTCATGCCACGCTGATGTCTTTGAATTTATATGAACTGCAGTTCATTACAACAAAGTAATCTGAAGAAtagctgcaacattttttttgcattactgaTTGTGTAACAGTTTCATGTTGTGGATATTTTCTCTAGAATATAGGTTTGGAGCccacttttgttttgtttttttagatttagtttttttctaagAACTTGAAGCTAGAATTATCATCAGTTAGCAACTATTGttgaaatatgctaaatattatAGCCTCATACTAAACAGAAAGAATGTGTTGACTTAAAAGTGggaattaaaaaacattcaaaacaaaa

Function

GO:

id name namespace
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU42824 lncRNA downstream 9262 15565419 ~ 15655181 (-) True G28870
XR_006250641.1 lncRNA downstream 219214 15443764 ~ 15445229 (-) True LOC122342747
TU42788 lncRNA downstream 246205 15416856 ~ 15418238 (-) True G28850
TU42674 lncRNA downstream 450992 15209684 ~ 15213451 (-) True G28789
XR_006250554.1 lncRNA downstream 640580 15017785 ~ 15023863 (-) True LOC122342397
TU42849 lncRNA upstream 60129 15733363 ~ 15733883 (-) True G28887
TU42857 lncRNA upstream 170171 15843405 ~ 15843739 (-) True G28895
TU42859 lncRNA upstream 254909 15928143 ~ 15928900 (-) True G28897
TU42891 lncRNA upstream 705466 16378700 ~ 16383670 (-) True G28916
TU42910 lncRNA upstream 738626 16411860 ~ 16419956 (-) True G28933
XM_043236426.1 mRNA downstream 137 15656075 ~ 15664306 (-) False slc37a3
XM_043236425.1 mRNA downstream 137 15656075 ~ 15664306 (-) True slc37a3
XM_043236027.1 mRNA downstream 16600 15644189 ~ 15647843 (-) True sapcd1
XM_043236026.1 mRNA downstream 16714 15644189 ~ 15647729 (-) False sapcd1
XM_043237519.1 mRNA downstream 31991 15613118 ~ 15632452 (-) True large1
XM_043236016.1 mRNA upstream 1585 15674819 ~ 15680118 (-) False tmem19
XM_043236018.1 mRNA upstream 1585 15674819 ~ 15680024 (-) False tmem19
XM_043236017.1 mRNA upstream 1585 15674819 ~ 15680024 (-) True tmem19
XM_043236543.1 mRNA upstream 804557 16477791 ~ 16483176 (-) True LOC122342598
XM_043237033.1 mRNA upstream 811333 16484567 ~ 16498839 (-) True LOC122342885
XR_006250613.1 other downstream 52868 15601440 ~ 15611575 (-) False kiaa0930
TU42583 other downstream 636825 15024587 ~ 15027618 (-) True LOC122342864
TU42581 other downstream 636825 15026110 ~ 15027618 (-) False LOC122342864
TU42549 other downstream 854306 14808597 ~ 14810137 (-) False LOC122342642
TU42539 other downstream 967257 14695860 ~ 14697186 (-) False LOC122342862
XR_006250809.1 other upstream 173735 15846969 ~ 15847087 (-) True LOC122343609
XR_006250818.1 other upstream 184150 15857384 ~ 15857502 (-) True LOC122343689
XR_006250819.1 other upstream 206887 15880121 ~ 15880239 (-) True LOC122343700
XR_006250820.1 other upstream 207286 15880520 ~ 15880638 (-) True LOC122343711
XR_006250908.1 other upstream 209267 15882501 ~ 15882619 (-) True LOC122343928

Expression Profile