RNA id: XM_043236431.1



Basic Information


Item Value
RNA id XM_043236431.1
length 6110
RNA type mRNA
GC content 0.51
exon number 32
gene id lamb1b
representative False

Chromosome Information


Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 13326365 ~ 13345061 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


AGGGATTTGAGACCGTGCCAGAGAAAGCCTGGAGTAACGCGGGGTCCGTAGCTTCACCACACGAGTAAACCAGCGTCGTCTAATATATCATGGGCGGGAGCTCCGCTTCTCCCACGCTCCTCAGCTCTGGAAAACATTACTGGAGAACGACAGCGACAATGTGGATCCTCCAGATTACAGCTCTCTCGATATCTATTGCTTTGCGCGCCCTGGCGCAGTTACCCGATCACAATGACAAGTGTGCAGAGGGGAGCTGTTACCCCGCTACAGGCGACCTGCTGATAGGAAGAGCACACCGCCTTGCAGCCTCCTCCACCTGCGGACTGGACGGGGCCGAGAGATTCTGCATTGTGAGCCATTTACAGGAGTTGAAAATGTGACCATTCAGCTGGATTTGGAAGCCGAATTCCACTTTACGCACCTCATCATGACCTTTAAGACCTTTCGGCCGGCAGCCATGCTGATTGAGCGTTCTGCAGATTATGGCCGAAGCTGGCAGGTGTACCGTTACTACGCTTTCAACTGCGCTGAATCCTATCCGCGCGTCCCTCAGGGGCCAATCAGAAAAGTGGATGATGTTATTTGTGACAGCCGCTATTCGGCCATTGAGCCATCCACAGAAGGAGAAGTCATTTTTAAGGCGCTTGATCCCGCGTTTAAGATTCCTGACCCTTACAGCCCACGTATTCAGAACTTGCTGAAAATCACAAACCTGCGCGTACGGATGGAAAAGTTGCACACTCTAGGTGATGATCTGTTTGACGACCGAGACGGGGTGAAAGAGAAATACTATTATGCCCTCTACGATATGGTCGTCCGTGGCAACTGTTTCTGCTACGGCCACGCCTCCAAGTGTGCACCAGTTGGCAATGAGGCAGGGGTCGAGGGCATGGTTCACGGTCATTGCATGTGTAATCACCACACTACCGGACTGAACTGTGAAGAGTGTGAGGAATTTTTCCAAGATCTGCCCTGGAGACCGGCAGTGGGCCGAGAGACAAATGCGTGCAAGAGATGCGAGTGCAACCATCACTCGTATTCGTGTCACTTTGACATGGCGGTGTATCTGTCATCGGGAAATAAGAGCGGAGGAGTGTGCGATGACTGTCAGCACAACACAGAGGGCCAATGGTGTGAGAACTGCAAACCCTTTTACTACAAGCACTCTGGCAGAAACATCAGAGACCCCAGGATCTGCGAGCCCTGCGATTGTGACCCACGCGGTTCTCTGAACGGAGGCTTATGCGACAGCGCCACGGATGTTCTGAGAGATACGATTGCCGGACAGTGCCGTTGCAAAGCCAACGTGGAGGGACAGCGTTGTGACCACTGTAAAAAGGGACATTACGGCCTCGGGGACGACCCATTGGGCTGTCGCTCATGCAGCTGTAATCCTCTAGGCACACTCCCTGCGGGAAGCCCTTGCGATATACAGACAGGAAGCTGTTACTGCAAACGTCTTGTGACTGGACGAAACTGTAACCAGTGTCTGCCGCAGCACTGGGGTCTCAGTAATGATATGGATGGCTGCAGACCATGTGACTGCGACGTAGGCGGGGCTTTGAATAATAATTGTTCTCAGGAGACAGGACAGTGTGCTTGTAAGAAGCATATGTTTGGTAGGCGATGTGACCAAATGCATTCTGGGTATTACTTTGCGGGACTGGACCACTATATTTACGAAGCCGAGGATGCTTCCTTCGGACCGGAAGTAAAAGTGCTTCAGAGGCCGTTGCCTTTGGATCGCAAACCGACCTGGACGGGTAAAGGATTTGCGAATGTACCAGAGGGCGAAACGCTGAGGttcaacatttacaatttaCCACGATCTATGGAGTACAACTTAATGATCCGCTATGAACCACTGTTGCCAGATGAATGGGAGCAGGTTGTGGTGCAGATTGAGCGGCCCAGAGGCACTTACCCAGCAGCACACTGCACTTCTACGTACGATGATGAACAGACCGTCTCGTTGCACCCTGGATCTAGatatGTAGTTCTACCCGGTCCAGTGTGTTTGGAAAAGGGTCAGAATTACACAGTAAAAATCAGCTTCCCACAGTATTCATCATACAGCTATCACTCTTCTCCTCACACACTTGTTGATTCAATAGTGCTTTTGCCAGAGGTGCAAGACCTGGATCTGTTTTCTGGCGGACCCCAGCAGCAGGAAGACTGGGAGATGTTCCAGAAATACAGATGCATGGAACGCAGCCAGAGTGTTATTAAAATCCCCCTGACGGATATTTGCAGAGATTACATCTTCAGCGTGTCAGCACTGCTACACAATGGAGCTCTGGAATGTAAGTGTGACCCCCAAGGTTCACTGAGCACCGTGTGTGACGGCATCGGCGGGCAGTGTCAGTGTCGCCCCAACGTTTTAGGAAGGAACTGCAACACTTGTGCCCCGGCCACCTACTTGTTCGGACCCTCGGGATGTAGacCATGTGACTGTAACCCCCTGGGCTCTCAGAACCTGTTCTGCCACCCCACCACGGGCCAGTGTCCATGTGTGCCAGGGGCGTACGGGCGGCAGTGCGGCAGCTGCAAGCCCAACCACTGGGGCTTCCCTCAGTGCCAGCCCTGCTTCTGTAACAGGAACAGTGAGCAGTGCCACCCTGTTACGGGCGAGTGTCTGAACTGCAGGGGTCACACCACAGGCCACAGCTGCGAGAGGTGTGAAAGCGGTTATCACCGCAACACACTACTGGGCTCAAGCGAGCAGTGCCGCCCTTGCATGTGTCCTAACGGACCAGGAAGTGGGATGCAGTTCGCTGAGAGCTGTTATCAGAATCCAAGTTCTCTCCAAATGGTGTGCGTCTGCAGCTCAGGCTACAAAGGACTCAAGTGTGAGGAATGCGCCTCTGGTTATTACGGCAACCCCCAGGTACCGGGAAGGAGATGCCATCCGTGTCAGTGTAACGGAAATATTAACATGCAGGACCCCGAATCGTGTGACGCCCGAACTGGTGCCTGCCTCAAATGCCTGTTTCACACCGACGGCGATGCGTGCCAGTACTGCAGCCGCGGTTATTACGGAGACGCCCGTACTCAGAGCTGCAGGAGATGCATGTGCCATCTCGTGGGAAGTTCCAGGCAAAGATGCGTGGACGGCTTGTGCGAGTGCGACCGGGTCAGCGGCCAGTGCCCGTGTCTGCCCGGCGTGGTGGGTCTGCACTGCGACCGCTGCGCCCCCAACACATGGGACATCAACAGCGGCAAAGGATGCCAACCTTGCCGGTGCCACCCCCAGCATTCTCACACGACCTCGTGCGATCTGCTGACCGGTCAGTGTTCCTGCAAGCCCGGTTTTGGAGGCAGGACGTGCGAGGAGTGCAGGGAGCTATTTTGGGGGAACCCAGAGGTCCAGTGCCGCGCATGCGACTGTGACCCACGAGGCATTGCTGCTCAGCAGTGTAATAAGACGAGCGGCGAGTGCGTGTGCGTAGAGGGTGTAGCCGGGCGGAGGTGTGACTCGTGCGGACGAGGCTACGTCGGGACCTTTCCCGACTGCGAGGCCTGCCATCTGTGTTTCCGCGAATGGGACGTTAACGTGGGAGAGCTGACCAATCACACGCAGAGGCTGGTGGATACCGTGGAGGAAATTAAAGAGACCGGTGTGGCTACGCCCTACAAAGACATCATATCGAGTCTGGACGATGAAACTAGACAACTCAGGCAGATTCTGGAAGACGACAGAGTTCAGCAAACGCTCACGCACGTGAAGATGACGCTAAAGCAAGCCAAtGAGACAACATCCCTCCTGAGAAAGTCTATTGATCGATCTGAAACAGATCTGGAGAAGGTATCTGCTGACCATCAGCAGACCGTGGAGAACCTAAAAGGCCTGACTGAGGAGGCCCAAAACCTACAAGAGATCTCCTCTGACAAACAGCAGCAGATTCTGAATATTAAACATTCGGACCCCAGAGGTGCTGCTGACGGCATCAGAGAATATTTCAGGAAATCCGGTGTGGCAGAGTTTCGCGTCAATCAAGCCGTCTCTGACCCGGGAAGCACAGTCAAAGAGTCTGCCCAGATACGGAAAGCCGCAGAGGCCAAACTAGACAGCACTGAGAAAGAATTTAACCTGAAACATCAGCTGCATTTACAGAGGCTGGAGAAAATTGATTCTGAACTGGACTCAGCAGACCTTTCAAGACTAAGCCATCAggtgtgtggAGGGGCGTCAGGTGTAGATGGCTGCGGTAGCTGCGGTGGTCTGGGATGTGTGAGCGAGGATGGCACGTCCCAGTGTGGCGGGGAAGGATGTGAGACTATTCAGACACGATCCCAAAAGGCCTTGACTGTAGCCAAAACCTCAGACCAAGAGGTCTTGCATGCTTTAAACGAAGTGGACAAACTAAACAAGATGgtgtcaGACGCTCGAGGACGTGCGGATGAGGCTAAGCTCAGCGCTCAGGATGTGTTACtgagagccaatcagagcaaagCACGAGTGGAACAGACCAACGAGGATCTCAGAGACCTCATTCAGCAAATACGTGACTTCCTCACAAatGAAACTGATCCGAAGCGTATAGAGGAAGTAGCTGATGAGGTGATGAAACTGAGTTTGCCCGTGTCACCCGGTGCACTGAAGAACGTGACCACAGAGATCCGCCACCATGTGGCCAGACTGACCCAGGTGGATGATATTCTGAGCCAGACGGCAGAGAATGCGTATAACGCAGAGAGACTCCTGCAAGAAGCACAGGCTGCCAATGAGAGAGCTACAGCACTGAAACAGGCCACAGATAAGACGAGGGAAACCCTGGAGGACACCGAGCGCGCTCAGACCGCTGCCGGCGAAAAACTCAAAGAGGTCGAGAGAGACATGAACCAAACGAAACTACAAAACGCTGACGTACAGTCAAAAATCGAAGCGACTGAGTTCGAACTGAGCAGCAGCACAGGAAGGTTTCTGGATCTTGAGAGAAAGCTTGAAGAACTCCAACAGAAAACTCCGGAAACCTCCAGGAGTGCAGATGAAACTCAGAGACAAACCGAGTACATCGAAGCAGAAATCAAACGCACGGAAGGGGAGTTTGACTCACTTGTGCAGCCGAAGTACCAACTGGCCAGTGGTCTGATAGATCAGAAGGCAGCAGGTGTAGTTGATGCGCGTCAGAAGGCCGAGCAGCTACGTCAGGAGGCAAAAGATCTATTAAAGGATGCCACAAGCAAACTACAGAGACTAAGAGAGCTGGAGCGATCGTTCGTGGAAAATCAGAACATTCTGGCGGAGAAAGCTCAGGATCTGGATGGACTGGAGGACAAGGCCAGAGACGTTCTGCAGGAGCTCAGTCAGAAAGTCGCCATCTACAGCACCTGCGCTTAAACTGCTATAACCAAGAACTAATAAACACCGTTATAACCTGAGATTATAACCAGATGCATCAGCTTTATCCAAATATGTCGCCTTGAATACAATTCGCGTAGTGTAGCGCACTGAAAAGCCAAGGTTTTGCTATGACCCTTCATCGTAGCTATATGGTTTTTTCTATGAAACTACAAAAAGCTCTCgtggtttatatttttttgtgctacTTAAACATTCCTCTGGGTGGAATAAGAGGAAGCCCAGTCCGCTGTGAACAGCAAATCAGTTTGGGTTTGCTTGATAAAACTAATGGTGACAAATGAAATgggaaaattattattatttttttttattttagcccaTCCGTTCATGAAACAGcgaaatgttgaaaacagctagGCCTACTGTACGAcggttattaaatatttaaacgcaTTAATTGATGATACAATAagcatttagtaataataaagcTTGTGTAAACTGAATATATCAATTACATTGTGACCCAATCATCTCTAACggtcgtttttttgtttgtttgtttttttcgaTTTTAATGGACTTTTTTTATCGACTTGAGACACGAAACCTATTTAAAACatagaaaacaaagagagattaACTCGAAAAGTAAGGTTACAGGTTTGCTAGCTGTGCTACAAAAACGATAGCCTTGACTGAAAACCGTTAGCGTTGTGAAGCAGCAAACTACGCTGTTATCTTAAACGTACAAGGAAAGGACTATAGTTACTTTATTTCCCCAATAAACCAACCAACCATTTCA

Function


GO:

id name namespace
GO:1902017 regulation of cilium assembly biological_process
GO:0007517 muscle organ development biological_process
GO:0050908 detection of light stimulus involved in visual perception biological_process
GO:0003140 determination of left/right asymmetry in lateral mesoderm biological_process
GO:0031290 retinal ganglion cell axon guidance biological_process
GO:0007634 optokinetic behavior biological_process

KEGG: NA

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TU41906 lncRNA upstream 5249 13312934 ~ 13321116 (+) True G28267
TU41894 lncRNA upstream 94382 13231664 ~ 13231983 (+) True G28256
TU41893 lncRNA upstream 95811 13230162 ~ 13230554 (+) True G28255
TU41892 lncRNA upstream 97764 13228381 ~ 13228601 (+) True G28254
TU41876 lncRNA upstream 136598 13189496 ~ 13189767 (+) True G28246
TU41946 lncRNA downstream 92875 13437936 ~ 13440022 (+) True G28295
TU41953 lncRNA downstream 122343 13467404 ~ 13470135 (+) True G28298
TU41976 lncRNA downstream 165795 13510856 ~ 13513593 (+) True G28312
XR_006250763.1 lncRNA downstream 171569 13516630 ~ 13520457 (+) True LOC122343375
TU42167 lncRNA downstream 412906 13757967 ~ 13760112 (+) True G28446
XM_043236438.1 mRNA upstream 406 13321545 ~ 13325959 (+) False LOC122342559
XM_043236436.1 mRNA upstream 406 13322051 ~ 13325959 (+) False LOC122342559
XM_043236435.1 mRNA upstream 8295 13313892 ~ 13318070 (+) False LOC122342558
XM_043236434.1 mRNA upstream 8295 13314346 ~ 13318070 (+) True LOC122342558
XM_043236443.1 mRNA upstream 15947 13306353 ~ 13310418 (+) True LOC122342560
XM_043236708.1 mRNA downstream 60868 13405929 ~ 13422500 (+) True vezt
XM_043236709.1 mRNA downstream 60870 13405931 ~ 13422500 (+) False vezt
XM_043236712.1 mRNA downstream 78177 13423238 ~ 13432687 (+) True metap2a
XM_043236713.1 mRNA downstream 78194 13423255 ~ 13432687 (+) False metap2a
XM_043236731.1 mRNA downstream 95575 13440636 ~ 13446821 (+) True depdc4
TU41889 other upstream 10681 13305669 ~ 13315684 (+) False G28252
TU41890 other upstream 10681 13305669 ~ 13315684 (+) True G28252
TU41888 other upstream 10681 13313868 ~ 13315684 (+) False G28252
TU41815 other upstream 172007 13150756 ~ 13154358 (+) True kin
TU41254 other upstream 1635236 11689314 ~ 11691129 (+) False ndufb2
XR_006250630.1 other downstream 60868 13405929 ~ 13433606 (+) False vezt
XR_006250632.1 other downstream 537833 13882894 ~ 13939226 (+) False LOC122342701
XR_006250631.1 other downstream 537848 13882909 ~ 13952425 (+) False LOC122342701
XR_006250622.1 other downstream 640456 13985517 ~ 13991772 (+) False trmu
XR_006250621.1 other downstream 640456 13985517 ~ 13991772 (+) False trmu

Expression Profile


XM_043236431.1 Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 3.
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XM_043236431.1 Expression in each Bioproject

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XM_043236431.1 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 35.
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