RNA id: XM_043236433.1


Basic Information

Item Value
RNA id XM_043236433.1
length 2943
RNA type mRNA
GC content 0.48
exon number 4
gene id tmcc3
representative False

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 13316932 ~ 13361938 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ctccagataAATGCTCACGAGGGCCGAGTGAGCGACCGAGTGAGTGAATGTGTCGCGCAGATTACAAAGAGGAATCCACGCACCGAGAGCGCGCGCGGCGGCGCCCCGCAAACCCGCGACACAATGTAGCTGACCGAGCCGCTGCAATCACACGCGGAGAGTCCAGTTCGAGCGGACCCGAGTGAGCTGAACTATGCCCAGCGCCGAGAGAACTTTACCCGAACTCGAGAGGAACTCTTTCTTACCCTGCGAAATGGCGGAGAGAGGTGGTGGTGATGTGAACACCCTCAACGTGCCAATTGTCATGCGTCGAGGAGGCTCGGACACGTGTTTAGATCTGGATTCTGATCTGGTGGTACGGGACGCCCCGCGATCGCGCAGCGGTCTTGACACCCTGCAGCAGAAAGTGCTAAAAGTGAAAGAGCAGCTGAGAATCGAGCAGAATCTACAGGATGAGAACGTGGCCGAGTACCTCAAACTCATCAACAGCGCGGACAAGCAGCAGAGCGGCCGCATCAAACAGGTGTTTGAGAAGAAAAACCAGAAAACGGCGCACAACATCGCCCAGCTTCAGAAAAAGCTCGAGCAGTACCAGCGCAAGATGAAGGAGTGCGACATCTCGAACGGCACCAAACACACGCCGCCGCACTCCAGAGAAAGCGACCCGCTCAAAGACCACCTCAAGGAAAGCGTGGTCACGGGAAGCGGCCGCCACCCGCATTTGGACAAAGTCAAAACGATCGGCCCGGGTGTTTCGCTGTCGCCGCCGTTCTTCTTCAGCAAATCCAGAGAGATCGCGAACCTCATCCGCAACAAATTTGGTAGCGCCGACAACATTGCGCACCTGAAGAGCAGCATGGAGGCGGGCGGCGGGTTGCAGGCGGAAGGAGGAGCCCGAAATCTGAGCGGCAGCGCCACGATAACCCCCAAGCCCAAATACCCGAGCGATGACGAGTGCTCCACGGAGACGTCGGTGTCGGTCGAGAGCAACGGTCACGTGACCGGATCCGGTGTGACGGGGCAGCACAGCGCGTCTGGGAGAGAAGGAGGTCAACCGGAAAACAGCAGCCGGCTGGTGGAGGCTTGGGAGGAGATCAGGGAGCTGAGGGAAGCTCAGAACCTACTGTCAGAAGACATCGACACCCTGAAGACCCAGTTTAGATGTGAATTTGACAGTATTATGCAAACACTACAAGAAGAGCGGTTCAGGTGCGAGCGCTTGGAAGAACAACTGAACGACCTCACAGAACTCCATCAAAATGAGACCGGAAACCTTAAACTGGAGCTAGCCAGCATCGAGGAGAAGATGGCCTATCAAGCCAATGAAAGGGCTCGGGATATACAGGACGCTCTAGAGGTTTGCCAGACGCGAGTGAGCAAGCTGGagctccagcagcagcagcagcaggtctTGCAGCTGGAGAGCGCCGACGCCAAAGTGCTGCTGGGAAAGTGCATCAACATCATGCTGGCCATCGTCACCGTGATCTTGGTGTGCGTCTCCACCGCCGCCAAGTTCTCCGCGCCGCTCATGCGGAGCCGTCTGCACATGTTCGGGACTTTCGTGTGCGTGTGTCTGCTGCTGTACGGCTGGAGCAACTGGGAGCATTTGCAGTGCGCCTTGGAACGAGTGCTCCTGCCCAGATGAAGCGCTCCTCCTGGGACGTTCCCTTCATAATGTGACTGTCCCGAGATGATGGCTTTAAcactttctgtgttttttttgtgtgtcctACGACGTACTGTAGCAGAAACGGGTCCATCTCTTGACTATATCGCGTTATTTCAAACAGCTTTTGTTAGCTGCGTCTTAAAAGTAAAGGCTGACCACCTTTTTTATATacgttttatgttttgttttttgttttttagatggCGACGGTCGTCTCGCAAAAACGCATCCGGGTAATATTTCACTctacataagaaaaaaaatagttggcATAAAGAACATGAAGACTAATTAGAGACcgtaatgttattttattataattttttttatcactatTAAACTTTTTCATGGGTGGtgagtaattattattattctcaatATTCGTTATTCTCATTAGATTCTTATTACTGTGATGCATTTGATTCTGATAACAATAGTTTTTctgattttagaatattttttttttatcgcagtaatgaaaatgtgttgaGGAATGCGTTCGATTACATCGttagaatacaaaaaaaagacgATGGTCTTAAAAgatgcttcattttctttatgcgGTAAAATGTAcgctttttttttgacattttgggtgaaatacGAACCAACGCGCACACGTTTTAGACGGGCTCTGCCGTTTTCTAGCATCATTTGTACTATTGAAATGGCCTGAAGTTCTTTTCACTGGCACTTTAAACACAGCGCCCAGGTTTATGAGATcctgtgtggggttttttttgttatcattaTACTTTTAGTCTGAGCCGTGGAGCTCTACAGTGACCACAAAAGATGGAAACGCcgtctttttgtttgttgtgtaataaaaaatgcCTTTGGGGGGGTTATAGAAACTAGAACATGAGAAGGAAACAAACGTCTCCGTCGAGTTTATGTAACGTATTCTGTTTCTCGTGGATGTTAGAATGACTATTTTTATAcgcatttttaatttgctttgttCAATGTACGCTTTTAATGATTCCCACGATGCAAACTGATTTCAGCGTTATTACCACTGTCCCTCGGAGTGTGTGCCTACCTGTGGTTTTGACTGAAGATTGTATAAGCCACAAAATCTGAATTCACCCATCAACCTAAACGTGGTGTTTAACTAGAGTTTTAGAGgcctttttacctttttaagcATGGGGggaaagtgatttttattttatacatgctTCAGTGTCCCTGTGGTAGGAGACTGGTCTGATCTCAGATGTGAtctaaacctaaaaataaaaacggcCTCATTTTTACTGAAA

Function

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006250599.1 lncRNA downstream 1698 13343726 ~ 13344257 (-) True LOC122342564
TU42067 lncRNA downstream 26207 13311873 ~ 13319748 (-) True G28377
TU42039 lncRNA downstream 93921 13250651 ~ 13252034 (-) True G28359
TU42040 lncRNA downstream 93921 13250651 ~ 13252034 (-) False G28359
TU42033 lncRNA downstream 100567 13242506 ~ 13245388 (-) True G28353
TU42094 lncRNA upstream 66092 13428028 ~ 13432669 (-) True G28397
TU42096 lncRNA upstream 66228 13428164 ~ 13432703 (-) False G28397
TU42147 lncRNA upstream 248280 13610216 ~ 13612771 (-) True G28434
TU42310 lncRNA upstream 458760 13820696 ~ 13827052 (-) True G28545
TU42337 lncRNA upstream 504841 13866777 ~ 13867298 (-) True G28564
XM_043236447.1 mRNA downstream 44626 13281183 ~ 13301329 (-) False rbm17
XM_043236444.1 mRNA downstream 44626 13281183 ~ 13301329 (-) True rbm17
XM_043236445.1 mRNA downstream 56249 13281183 ~ 13289706 (-) False rbm17
XM_043236446.1 mRNA downstream 56290 13281183 ~ 13289665 (-) False rbm17
XM_043237036.1 mRNA downstream 70481 13268534 ~ 13275474 (-) True pfkfb3
XM_043236714.1 mRNA upstream 11695 13373631 ~ 13375343 (-) True ndufa12
XM_043236711.1 mRNA upstream 14238 13376174 ~ 13384446 (-) True nr2c1
XM_043236707.1 mRNA upstream 22652 13384588 ~ 13403216 (-) True fgd6
XM_043236710.1 mRNA upstream 71373 13433309 ~ 13440103 (-) True usp44
XM_043237130.1 mRNA upstream 99107 13461043 ~ 13465673 (-) False si:ch211-244b2.3
TU41785 other downstream 856799 12481920 ~ 12489156 (-) False cpm
TU41786 other downstream 856799 12482102 ~ 12489156 (-) False cpm
TU41650 other downstream 1330188 12014631 ~ 12015767 (-) True G28093
XR_006250735.1 other downstream 1800143 11426497 ~ 11545812 (-) False ppfia2
TU41528 other downstream 1921872 11422069 ~ 11424083 (-) False ppfia2
TU42098 other upstream 49688 13411624 ~ 13422539 (-) False G28397
XR_006250767.1 other upstream 331009 13692945 ~ 13698715 (-) False LOC122343399
XR_006250766.1 other upstream 331244 13693180 ~ 13698715 (-) False LOC122343399
XR_006250741.1 other upstream 453638 13815574 ~ 13831851 (-) True LOC122343280
TU42363 other upstream 613421 13975357 ~ 13980559 (-) True G28575

Expression Profile