RNA id: XR_006250597.1


Basic Information

Item Value
RNA id XR_006250597.1
length 2170
RNA type transcript
GC content 0.51
exon number 8
gene id tmcc3
representative False

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 13316932 ~ 13361938 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ctctccagataAATGCTCACGAGGGCCGAGTGAGCGACCGAGTGAGTGAATGTGTCGCGCAGATTACAAAGAGGAATCCACGCACCGAGAGCGCGCGCGGCGGCGCCCCGCAAACCCGCGACACAATGTAGCTGACCGAGCCGCTGCAATCACACGCGGAGAGTCCAGTTCGAGCGGACCCGAGTGAGCTGAACTATGCCCAGCGCCGAGAGAACTTTACCCGAACTCGAGAGGAACTCTTTCTTACCCTGCGAAATGATTCCAGATTTGCAGAGATACCGGATGACGCGAATCAGACACcagGCGGAGAGAGGTGGTGGTGATGTGAACACCCTCAACGTGCCAATTGTCATGCGTCGAGGAGGCTCGGACACGTGTTTAGATCTGGATTCTGATCTGGTGGTACGGGACGCCCCGCGATCGCGCAGCGGTCTTGACACCCTGCAGCAGAAAGTGCTAAAAGTGAAAGAGCAGCTGAGAATCGAGCAGAATCTACAGGATGAGAACGTGGCCGAGTACCTCAAACTCATCAACAGCGCGGACAAGCAGCAGAGCGGCCGCATCAAACAGGTGTTTGAGAAGAAAAACCAGAAAACGGCGCACAACATCGCCCAGCTTCAGAAAAAGCTCGAGCAGTACCAGCGCAAGATGAAGGAGTGCGACATCTCGAACGGCACCAAACACACGCCGCCGCACTCCAGAGAAAGCGACCCGCTCAAAGACCACCTCAAGGAAAGCGTGGTCACGGGAAGCGGCCGCCACCCGCATTTGGACAAAGTCAAAACGATCGGCCCGGGTGTTTCGCTGTCGCCGCCGTTCTTCTTCAGCAAATCCAGAGAGATCGCGAACCTCATCCGCAACAAATTTGGTAGCGCCGACAACATTGCGCACCTGAAGAGCAGCATGGAGGCGGGCGGCGGGTTGCAGGCGGAAGGAGGAGCCCGAAATCTGAGCGGCAGCGCCACGATAACCCCCAAGCCCAAATACCCGAGCGATGACGAGTGCTCCACGGAGACGTCGGTGTCGGTCGAGAGCAACGGTCACGTGACCGGATCCGGTGTGACGGGGCAGCACAGCGCGTCTGGGAGAGAAGGAGGTCAACCGGAAAACAGCAGCCGGCTGGTGGAGGCTTGGGAGGAGATCAGGGAGCTGAGGGAAGCTCAGAACCTACTGTCAGAAGACATCGACACCCTGAAGACCCAGTTTAGATGTGAATTTGACAGTATTATGCAAACACTACAAGAAGAGCGGTTCAGGTGCGAGCGCTTGGAAGAACAACTGAACGACCTCACAGAACTCCATCAAAATGAGACCGGAAACCTTAAACTGGAGCTAGCCAGCATCGAGGAGAAGATGGCCTATCAAGCCAATGAAAGGGCTCGGGATATACAGTTTGGACCTTCAACCCACTGGGCCACCTttgaagtccactatatggagaaaaatcctggGAGGTATTCCTCAAAAACGTACATTTCTTTTCGaatgaagaaagagagacacaaacatcttggatggcaccgggATACCAAAGTGAAAAGCAACAAATGCTggcattatttgaaataaaggaTGACACAACTACAGTTTGGCTTTTACGGCAAAGCTTCAAGTGAAGTATAGGTGCTGCCGCAGAAATGCTAAAATCTTCTCCCATGCGTCCTCTTGAGCGTATGCGTGTGGTTTCGTCTGTCCACCCCACAGCATGACAACTGTAGGAACAACAACACATAGAGAGTATTCAGACAgGATGTAGTTGGATGCTCTGACGTGAGGAGAGTACGGAGGTTCGATCAGATGACCTGCGCCAGGATACGTCAGGGCCGTCAACAGGTGTCGATTTCCTGCTTTCTCCATCATCATCTCCATCTGAGGGTACAAGACTCGTATCAAAGATCCAATTCAGAGCAGAGGATTTCAGTTATAGCAGAGTAAATAACTGAGTGACTGACTTGGTTCCCAGCCAATATTTTTTACATCATACTTTTAAAtctgttacaaaaacccatccaTAACCCCTTGAAGGCGTATGGGTTATTTTTTAGGGCAGGTCACCTAAAAATTACAATGACTTACAGATAATTTTTTGAAATACtgcacattttaatgcattgttctGTCTTTTTGAAGGTtaaatttattgtaaatgtattaaaagtcctaaaaagtt

Function

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU42039 lncRNA downstream 64898 13250651 ~ 13252034 (-) True G28359
TU42040 lncRNA downstream 64898 13250651 ~ 13252034 (-) False G28359
TU42033 lncRNA downstream 71544 13242506 ~ 13245388 (-) True G28353
TU42028 lncRNA downstream 87613 13229094 ~ 13229319 (-) True G28350
TU42027 lncRNA downstream 88985 13227700 ~ 13227947 (-) True G28349
TU42094 lncRNA upstream 66090 13428028 ~ 13432669 (-) True G28397
TU42096 lncRNA upstream 66226 13428164 ~ 13432703 (-) False G28397
TU42147 lncRNA upstream 248278 13610216 ~ 13612771 (-) True G28434
TU42310 lncRNA upstream 458758 13820696 ~ 13827052 (-) True G28545
TU42337 lncRNA upstream 504839 13866777 ~ 13867298 (-) True G28564
XM_043236447.1 mRNA downstream 15603 13281183 ~ 13301329 (-) False rbm17
XM_043236444.1 mRNA downstream 15603 13281183 ~ 13301329 (-) True rbm17
XM_043236445.1 mRNA downstream 27226 13281183 ~ 13289706 (-) False rbm17
XM_043236446.1 mRNA downstream 27267 13281183 ~ 13289665 (-) False rbm17
XM_043237036.1 mRNA downstream 41458 13268534 ~ 13275474 (-) True pfkfb3
XM_043236714.1 mRNA upstream 11693 13373631 ~ 13375343 (-) True ndufa12
XM_043236711.1 mRNA upstream 14236 13376174 ~ 13384446 (-) True nr2c1
XM_043236707.1 mRNA upstream 22650 13384588 ~ 13403216 (-) True fgd6
XM_043236710.1 mRNA upstream 71371 13433309 ~ 13440103 (-) True usp44
XM_043237130.1 mRNA upstream 99105 13461043 ~ 13465673 (-) False si:ch211-244b2.3
TU41785 other downstream 827776 12481920 ~ 12489156 (-) False cpm
TU41786 other downstream 827776 12482102 ~ 12489156 (-) False cpm
TU41650 other downstream 1301165 12014631 ~ 12015767 (-) True G28093
XR_006250735.1 other downstream 1771120 11426497 ~ 11545812 (-) False ppfia2
TU41528 other downstream 1892849 11422069 ~ 11424083 (-) False ppfia2
TU42098 other upstream 49686 13411624 ~ 13422539 (-) False G28397
XR_006250767.1 other upstream 331007 13692945 ~ 13698715 (-) False LOC122343399
XR_006250766.1 other upstream 331242 13693180 ~ 13698715 (-) False LOC122343399
XR_006250741.1 other upstream 453636 13815574 ~ 13831851 (-) True LOC122343280
TU42363 other upstream 613419 13975357 ~ 13980559 (-) True G28575

Expression Profile