RNA id: XM_043236434.1


Basic Information

Item Value
RNA id XM_043236434.1
length 2034
RNA type mRNA
GC content 0.43
exon number 11
gene id LOC122342558
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 13313892 ~ 13318070 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCATGTTGCGGCaggaaatataataaataacttacCACAGTCATGGTGTAGTTAATTCAGAAACACTTATCACATCATGTTCAGCAGGCCTTgcaatcatttactcatctttGTTCCCCAAGTCTTCCTTGCCAAATTGTTTGCCAATAAATGTCAGTGTTGACTGAATGTTACGACTTACCTCAAAAAGGACGAGGAGTACCACAGAAGCAGCATAAATCTGGTCAACGTGACTCATTGTATTCCAAGTCATcgaaagtcattttaaaacagaCTACAGGCACTGAGAGGGCGGCGTGTCCCATGCTGTCTGTTCGGCCCAATCGAGCACTGGTGGACGAGAAATTTCAGATTGTCATAATGAATTTACTGCCAAATCAAAAGGTGACGCTACACTCTTTACATCAGTCAGAGGACAAGGACTTCTGGGAGGCATTTGGACACTACATCAGTGATGAACAGGGGACAGTGACAGTGGCCAAAGATGAAAGTTTGGGAGGGACCTATGAAGGCACAGAAGAGATGGGTTTGCTGTGGAGCATGAGGCCCATACCAGGAAGTCGACCTGGACTCAGGCTGCGTAAGATGAATATGCTCACACCGATGGTAGTTCACATCTCAGTATATGGTGGACATCTATCTCAAGGATTCAGGCAGCAAACACCACTGACAAGCAGTGTCATTGAGCGCTGGTATGTTGCACCAGGTGTTCAGAGGGAAAACATCAGGGAGAACGGAGTACGAGGAACTCTACTTCTTCCTCCAGgtccTGGGCCGTACCCAGGAGTGCTGGACCTATGGGGAGGAGGTGGTGGTTTGGTTGAGTATCGTTCTGGCTTGCTTGCATCTCACGGCTTTGCCTCCATGGCACTTGAATACCTCGGTCCAGAAGAGCTGAGAACAGCTGATGTCGATGTGTCATACTTTGAGAAAGCATATCAGATCCTGCAGAATCATCCGAAGGTACAGAGGGACCGTGTGGCAATGCTTGGACTGTCTTTTGGAAGTGCCATCACACTCAGTATGGCAGCCTACTCCAAAGTCATCGAGCTCCGGTGCTGTGTGTGTATCAGCGGAAGTCATGTGTTTGCTGTAGATAAATCCATCTTTGAAGTCTTTGAGGAAATGAAAAAGTATATAAATAGGGTACATGTGAATGAAGAGAATCAGGTAGCATACAGAGACCTCTTCTTGCCCATTCCCTCAGACCCAGCTCTCAAAGTGGATGTTGGGAGAATAAAGTGTCCTCTTTTGTTGGTGAATGCTGATGATGATCAGAGCTGGGCTTCTGTTGAATCTGCTGAAGATATGGAGATGATGATGGAGAAAGCAGGAAATCGACACCTGTTGACGGCCCTGACGTATCCTGGCGCAGGTCATCTGATCGAACCTCCGTACTCTCCTCACGTCAGAGCATCTAACTTCATCCTGCAGGATATGAAGGAGAAgaTTGTCATGCTGTGGGGTGGACAGACGAAACCACACGCATACGCTCAAGAGGACGCATGGGAGAAGATTTTAGCATTTCTGCGGCAGCACCTATACTTCACTTCAAACTCTGCCGTAAAAGCCAAACTGTAGTTGTGTCAtcctttatttcaaataatgtcGATAATGATCGCCAGCATTTGTTACTTTTCACCTTGGTATCTGTAGGACATAAAAATGGACAGTAAGTATTGTAATGATGTATAGAGATTATAATGACAATAACTTAAAGCACAGGGTATATTGGGCAGTACTTTTTTGATACactacttcattttttttacccaCTACTGCAAAGTTGAAATTAATGCATTGcctgattttaattttgtttaaaatttattttgataatctaTTTTCCAAAgtgatttttgtaaatgtcacCTAATTATTTTGAACGGAAGAACTGGTGCAAAAGccatcagattttaaaataggaATGTAATGTAGGTCAATTaccttcaaaatgtaatatgtatgtTTGCTATGTTCAatgtcatgtcatttttaaagttgtggatgaataaatatgctattttaaaaaga

Function

GO:

id name namespace
GO:0006637 acyl-CoA metabolic process biological_process
GO:0016790 thiolester hydrolase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU41894 lncRNA upstream 82363 13231664 ~ 13231983 (+) True G28256
TU41893 lncRNA upstream 83792 13230162 ~ 13230554 (+) True G28255
TU41892 lncRNA upstream 85745 13228381 ~ 13228601 (+) True G28254
TU41876 lncRNA upstream 124579 13189496 ~ 13189767 (+) True G28246
TU41854 lncRNA upstream 136369 13176963 ~ 13177977 (+) True G28233
TU41946 lncRNA downstream 119866 13437936 ~ 13440022 (+) True G28295
TU41953 lncRNA downstream 149334 13467404 ~ 13470135 (+) True G28298
TU41976 lncRNA downstream 192786 13510856 ~ 13513593 (+) True G28312
XR_006250763.1 lncRNA downstream 198560 13516630 ~ 13520457 (+) True LOC122343375
TU42167 lncRNA downstream 439897 13757967 ~ 13760112 (+) True G28446
XM_043236443.1 mRNA upstream 3928 13306353 ~ 13310418 (+) True LOC122342560
XM_043236448.1 mRNA upstream 12392 13292988 ~ 13301954 (+) True il15ra
XM_043236438.1 mRNA downstream 3475 13321545 ~ 13325959 (+) False LOC122342559
XM_043236436.1 mRNA downstream 3981 13322051 ~ 13325959 (+) False LOC122342559
XM_043236430.1 mRNA downstream 8295 13326365 ~ 13345061 (+) True lamb1b
XM_043236431.1 mRNA downstream 8295 13326365 ~ 13345061 (+) False lamb1b
XM_043236708.1 mRNA downstream 87859 13405929 ~ 13422500 (+) True vezt
TU41815 other upstream 159988 13150756 ~ 13154358 (+) True kin
TU41253 other upstream 1623217 11689314 ~ 11691129 (+) True ndufb2
TU41254 other upstream 1623217 11689314 ~ 11691129 (+) False ndufb2
XR_006250736.1 other upstream 1898119 11386130 ~ 11416227 (+) False acss3
TU41881 other downstream 5218 13323288 ~ 13530631 (+) True G28249
XR_006250630.1 other downstream 87859 13405929 ~ 13433606 (+) False vezt
XR_006250632.1 other downstream 564824 13882894 ~ 13939226 (+) False LOC122342701
XR_006250631.1 other downstream 564839 13882909 ~ 13952425 (+) False LOC122342701
XR_006250622.1 other downstream 667447 13985517 ~ 13991772 (+) False trmu

Expression Profile