RNA id: XM_043236442.1



Basic Information


Item Value
RNA id XM_043236442.1
length 1817
RNA type mRNA
GC content 0.44
exon number 12
gene id LOC122342559
representative False

Chromosome Information


Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 13305744 ~ 13325959 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


gattaaaatgacattatcaTGACATTGCTGTCCCGGCGCTGTTTGGATCAGTCTAACATCTGAAACCCTTCCCAGAAGAAACACCCGGTCTAAACCTATCGTACTGTATCATGCTGGCACCTGTCGGgaCTATGGGCACTGAGAGGGCGGCGTGTCCCATGCTGTCTGTTCGGCCCAATCGAGCACTGGTGGACGAGAAATTTCAGATTGTCATAATGAATTTACTGCCAAATCAAAAGGTGACGCTACACTCTTTACATCAGTCAGAGGACAAGGACTTCTGGGAGGCATTTGGACACTACATCAGTGATGAACAGGGGACAGTGACAGTGGCCAAAGATGAAAGTTTGGGAGGGACCTATGAAGGCACAGAAGAGATGGGTTTGCTGTGGAGCATGAGGCCCATACCAGGAAGTCGACCTGGACTCAGGCTGCGTAAGATGAATATGCTCACACCGATGGTAGTTCACATCTCAGTATATGGTGGACATCTATCTCAAGGATTCAGGCAGCAAACACCACTGACAAGCAGTGTCATTGAGCGCTGGTATGTTGCACCAGGTGTTCAGAGGGAAAACATCAGGGAGAACGGAGTACGAGGAACTCTACTTCTTCCTCCAGgtccAGGGCCGTACCCAGGAGTGCTGGACCTATGGGGAGGAGGTGGTGGTTTGGTTGAGTATCGTTCTGGCTTGCTTGCATCTCACGGCTTTGCCTCCATGGCACTTGAATACCTCGCTCCAGAAGAGCTGAGAACAGCTGATGTCGATGTGTCATACTTTGAGAAAGCATACCAGATCCTGCAGAATCATCCGAAGGTACAGAGGGACCGTGTGGCAATGCTTGGACTGTCTTTTGGAAGTGCCATCACACTCAGTATGGCAGCCTACTCCAAAGTCATCGAGCTCCGGTGCTGTGTGTGTATCAGCGGAAGTCACATGTGTCCTGTAGATAAATCCATCTTTGAAGTCTTTGAGGAAATTAGAAAGTATAGAAATAGGGTACGTGTGAATGAAGAGAACCAGGTAATATACAGAGACATCATCTTGCCCATTCCCTCAGACCCAGCTCTCAAAGTGGATGTTGGGAGAATAAAGTGTCCTCTTTTGTTGGTGAATGCTGATGATGATCAGAACTGGGCTTCTGTTGAATCTGCTGAAGATATGGAGATGATGATGGAGAAAGCAGGAAATCGACACCTGTTGACGGCCCTGACGTATCCTGGCGCAGGTCATCTGATCGAACCTCCGTACTCTCCTCACGTCAGAGCATCCAACTACATCCTGCAGGATATGAAGGAGAAgaTTGTCATGCTGTGGGGTGGACAGACGAAACCACACGCATACGCTCAAGAGGACGCATGGGAGAAGATTTTAGCATTTCTGCGGCAGCACCTATACTTCACTTGAAGCTTTGCCGTAAAAGCCAAACTGTAGTTGTGTCAtcctttatttcaaataatgccAGCATTTGTTGCTTTTCACTTTGGTATCTGTAGGACATAAAAAATGGACAGTAAGTATTGTAATGATGTATAGAGATTATAATGACAATAGCTTAAAGCAGGGTATTTTTTGATGCACTAATCCAACTTTTTCTGCAAAATTGATATTAATCCATtatctaatttaattttgattaaaaaaaaagtattttccaaagcgattattgtaattattaccTAATTATAGAAGGTATATAGCAATGTGACATTGTAATGTAGGCTGATTAACTTCAATTGTAATACGTTTGCTTTTTTCAAAGTTGCGGATGAATAAATTTgctatgggtttttttttttctaattacaattacaa

Function


GO:

id name namespace
GO:0006637 acyl-CoA metabolic process biological_process
GO:0016790 thiolester hydrolase activity molecular_function

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU41894 lncRNA upstream 73761 13231664 ~ 13231983 (+) True G28256
TU41893 lncRNA upstream 75190 13230162 ~ 13230554 (+) True G28255
TU41892 lncRNA upstream 77143 13228381 ~ 13228601 (+) True G28254
TU41876 lncRNA upstream 115977 13189496 ~ 13189767 (+) True G28246
TU41854 lncRNA upstream 127767 13176963 ~ 13177977 (+) True G28233
TU41946 lncRNA downstream 111977 13437936 ~ 13440022 (+) True G28295
TU41953 lncRNA downstream 141445 13467404 ~ 13470135 (+) True G28298
TU41976 lncRNA downstream 184897 13510856 ~ 13513593 (+) True G28312
XR_006250763.1 lncRNA downstream 190671 13516630 ~ 13520457 (+) True LOC122343375
TU42167 lncRNA downstream 432008 13757967 ~ 13760112 (+) True G28446
XM_043236448.1 mRNA upstream 3790 13292988 ~ 13301954 (+) True il15ra
XM_043236449.1 mRNA upstream 3790 13292989 ~ 13301954 (+) False il15ra
XM_043236450.1 mRNA upstream 3790 13292994 ~ 13301954 (+) False il15ra
XM_043236451.1 mRNA upstream 3790 13292996 ~ 13301954 (+) False il15ra
XM_043237551.1 mRNA upstream 50847 13238214 ~ 13254897 (+) False prkcq
XM_043236430.1 mRNA downstream 406 13326365 ~ 13345061 (+) True lamb1b
XM_043236431.1 mRNA downstream 406 13326365 ~ 13345061 (+) False lamb1b
XM_043236708.1 mRNA downstream 79970 13405929 ~ 13422500 (+) True vezt
XM_043236709.1 mRNA downstream 79972 13405931 ~ 13422500 (+) False vezt
XM_043236712.1 mRNA downstream 97279 13423238 ~ 13432687 (+) True metap2a
TU41815 other upstream 151386 13150756 ~ 13154358 (+) True kin
TU41253 other upstream 1614615 11689314 ~ 11691129 (+) True ndufb2
TU41254 other upstream 1614615 11689314 ~ 11691129 (+) False ndufb2
XR_006250736.1 other upstream 1889517 11386130 ~ 11416227 (+) False acss3
XR_006250630.1 other downstream 79970 13405929 ~ 13433606 (+) False vezt
XR_006250632.1 other downstream 556935 13882894 ~ 13939226 (+) False LOC122342701
XR_006250631.1 other downstream 556950 13882909 ~ 13952425 (+) False LOC122342701
XR_006250622.1 other downstream 659558 13985517 ~ 13991772 (+) False trmu
XR_006250621.1 other downstream 659558 13985517 ~ 13991772 (+) False trmu

Expression Profile