RNA id: XM_043236444.1


Basic Information

Item Value
RNA id XM_043236444.1
length 1686
RNA type mRNA
GC content 0.49
exon number 13
gene id rbm17
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 13281183 ~ 13301329 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCGGGAGGAGCTTGTCGCAAGCGTCCACTTCTTGGGGGGTGCCTGGATTTTTGTAAACGACGGAGCCCTCTGTGGCGTTTTCAGCTGTCCTGTTTGATTGAGCCGAACTGAGTTCAGATCCAATGACTGATACAGagtttTTGGTTGGCAAGAAGGTAAAATGTCTTTATACGATGATTTGGGGGTCGCGACAAGCGACACTAAAACAGAAGGATGGTCTAAAAACTTCAAACTGCTTCAGTCTCAGTTGAAAGTGAAGAAAGCTGCACTGACACAAGCAAAGACCCAGAGGATGAGACAGTCCAATGTTCTCGCTCCGGTTATCGATCTGAAGAGGGGAAGTGCTGTAGATGACAGACAGATCTCTGATACGCCTCCACACATCGCTGCAGGGATGAAGGACTCGGCGTCAGCTGGGTTTTCATCCGGTGATGTGCTGATCCCATTGGCTGATGAGTATGACCCCATGTTTCCCAACGACTATGAGAAAGTGGTAAAGAGACATAGAGAAGAAcgacaaagacagagagaacagGAGCGACAGAAAGAAATTGAGGAGCGAGAGAAGAAACGTAAAGAGAGGCACGAAGGAGGTGCAGCGCCAAGCGGATTTTCACGTTTCCCAACAGAAGGTGAATCGGACGAGGAGGAGGActatgagagagaaaagaggaagaggaGTTTGGGAGGAGCCGCCATCGCCCCGCCGACATCACTAGTGGAGCGAGACTCGACGTATTCGTATGATGAAGAGGGTCGGCAGAGGTCGAAAGCAGCAATCCCACCCCCTATTTTTGATGACTCCGATAGACCGCGGTCTCCCCCGGGACCAACGAACTCATTCCTGGCCAACATGGGcggTACTGTGGCTCATAAAATCATGCAGAAGTACGGATTCAGAGATGGACAGGGACTGGGGAAGCACGAGCAGGGGTTGAGCACGGCCCTTTCGGTGGAGAAAACCAGCAAGCGCGGGGGCAAGATCATTATTGGAGACTCGACGGAAAAGAcatcAGGATCCAGTCAGAATGTGGCTGATCCACATGGCTCTAATTCAGCGGACGCCTCGAAGAAAAACGAGACCAACCCTCTTACAGAGATTCTCAAATGTCCCACGAAAGTGGTGCTGCTGCGGaacATGGTTGGCCGTGGAGAAGTGGATGAAGACCTGGAAGCAGAGACTAAAGAAGAGTGTGAGAAGTACGGCAAAGTCGTCAAGTGCGTCATCTTCGAGatcTCTGGAGTTTCCGACGACGAAGCCGTCCGCATTTTCCTGGAGTTCGAACGAGTCGAATCGGCCATTAAAGCCGTGGTGGATCTAAATGGGCGCTACTTTGGAGGTCGCGTGGTGAAGGCCTGTTTTTATAACTTGGACAAGTTTCGTGTCTTAGACCTGGGAGATCAGGTGTGAGTGGGAGAACCAGACCCGCGCAACCAGGAGAGAATAAACACCAGGGGGAAGTAATCGGTCTTTCTGTAAATAGCATGAGTAATTTTATACACCCTTGTAAAACATTAGTTTATGTGCCCCTTTTCCGCAATACGTTTTGTAACGAAAATTTAATTTGCTCTTTTGTGAATTGCTTCTAGTCTCTCTCACACCTCACGGTTAAAATATCCTTTTGTCCTTGTGATTTAAGATGTGACGAAGAtcccagaaataaaaaaacgctTTTGGGAGAATAA

Function

GO:

id name namespace
GO:0003676 nucleic acid binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG:

id description
K12840 RBM17, SPF45; splicing factor 45

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU42039 lncRNA downstream 29149 13250651 ~ 13252034 (-) True G28359
TU42040 lncRNA downstream 29149 13250651 ~ 13252034 (-) False G28359
TU42033 lncRNA downstream 35795 13242506 ~ 13245388 (-) True G28353
TU42028 lncRNA downstream 51864 13229094 ~ 13229319 (-) True G28350
TU42027 lncRNA downstream 53236 13227700 ~ 13227947 (-) True G28349
TU42067 lncRNA upstream 10544 13311873 ~ 13319748 (-) True G28377
XR_006250599.1 lncRNA upstream 42397 13343726 ~ 13344257 (-) True LOC122342564
TU42094 lncRNA upstream 126699 13428028 ~ 13432669 (-) True G28397
TU42096 lncRNA upstream 126835 13428164 ~ 13432703 (-) False G28397
TU42147 lncRNA upstream 308887 13610216 ~ 13612771 (-) True G28434
XM_043237036.1 mRNA downstream 5709 13268534 ~ 13275474 (-) True pfkfb3
XM_043237035.1 mRNA downstream 5716 13268075 ~ 13275467 (-) False pfkfb3
XM_043237034.1 mRNA downstream 5802 13268075 ~ 13275381 (-) False pfkfb3
XM_043236651.1 mRNA downstream 94293 13177020 ~ 13186890 (-) True tmem110l
XM_043236341.1 mRNA downstream 117060 13154146 ~ 13164123 (-) True itih2
XM_043236432.1 mRNA upstream 44626 13345955 ~ 13361937 (-) True tmcc3
XM_043236433.1 mRNA upstream 44626 13345955 ~ 13361936 (-) False tmcc3
XM_043236714.1 mRNA upstream 72302 13373631 ~ 13375343 (-) True ndufa12
XM_043236711.1 mRNA upstream 74845 13376174 ~ 13384446 (-) True nr2c1
XM_043236707.1 mRNA upstream 83259 13384588 ~ 13403216 (-) True fgd6
TU41785 other downstream 792027 12481920 ~ 12489156 (-) False cpm
TU41786 other downstream 792027 12482102 ~ 12489156 (-) False cpm
TU41650 other downstream 1265416 12014631 ~ 12015767 (-) True G28093
XR_006250735.1 other downstream 1735371 11426497 ~ 11545812 (-) False ppfia2
TU41528 other downstream 1857100 11422069 ~ 11424083 (-) False ppfia2
XR_006250598.1 other upstream 15603 13316932 ~ 13361938 (-) False tmcc3
XR_006250597.1 other upstream 15603 13316932 ~ 13361938 (-) False tmcc3
XR_006250596.1 other upstream 23196 13324525 ~ 13361938 (-) False tmcc3
TU42098 other upstream 110295 13411624 ~ 13422539 (-) False G28397
XR_006250767.1 other upstream 391616 13692945 ~ 13698715 (-) False LOC122343399

Expression Profile