RNA id: XM_043236453.1


Basic Information

Item Value
RNA id XM_043236453.1
length 2608
RNA type mRNA
GC content 0.46
exon number 11
gene id gdi2
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 5401464 ~ 5410042 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CACACCCACCGTGGGTGACGTGACAGCGCACTTCTTTCATTTCCAGCTTTGCAAGATCTCCATTTTCTTCGGGCCGACGCGTAGGAAAAGGGGATTAAAGACGAGGAAAAATGAATGAAGAATACGACGTTATCGTGTTGGGAACCGGGCTGACGGAATGCATCCTGTCTGGGATCATGTCCGTGAAGGGGAAGAAGGTTCTGCACATGGACAGGAACTCGTACTATGGAGGGGATAGTGCCTCCATCACCCCTCTGGAGGATTTGTACAAGCGTTTCAGTCTTCCTGGCAGTCCTCCTGAGTCCATGGGAAAGGGTCGTGACTGGAACGTAGACCTCATTCCCAAGTTTCTAATGGCCAATGGTCAGCTGGTCCGTATGCTGCTGATCACACAGGTGACACGTTACCTGGACTTCAAAGTGATCGAGGGCAGCTTTGTCTACAAAAAGGGCAGCATCTACAAAGTGCCCTCCACTGAGACTGAAGCTCTGGCATCCAGCCTCATGGGACTTTTTGAGAAAAGACGATTCAGGAAGTTCCTTGTGTTTGTTGCCAACTTTGATGAAAATGACCCAAAGACCTTGGAGGGAGTGGACCCAAAAAAGACCACCATGCGGGATGTGTACAAAAAATTTGACCTTGGGCAGGATGTTGTCGACTTCACCGGCCACGCTCTGGCACTCTACCGCACAGATGACTATCTGGATCAACCCTGCATAGAGACGATAAACAGGATTAAGTTGTACAGCGAGTCTTTGGCGAGGTATGGAAAGAGTCCATATCTGTACCCTCTCTATGGACTGGGAGAGCTGCCCCAAGGCTTCGCCAGATTAAGTGCCATTTATGGAGGAACATACATGCTGAACAAGCCCATTGAGGAGATTATTGTAGAGAACGGCAAAGTGGTGGGCGTCAAATCTGAGGGAGAGATCGCTCGCTGCAAGCAGCTGATTTGCGACCCCAGCTATGTCATGGACCGAGTCAACAAGGTGGGTCAGGTGATCCGGGTCATCTGCGTCATGAGCCACCCCATCAAGAACACCAGCGATGCCAACTCCTGCCAGATCATCATCCCTCAGAACCAGGTCAACAGGAAGCACGATATCTATGTGTGCATGATCTCTTACGCACACAACGTGGCGGCCCAGGGTAAATACATAGCCATAGTCAGTACCACTGTGGAGACCAACGACCCTGAGAAAGAGATCAAACCAGCCCTGGACCTTTTGGAACCGGTTGAGCAGAAATTTGTGAGCATTAGTGATCAGTATGCGCCAACCGATGTGGGCTCTGACAGCCAGATCTTTATCTCTCGCTCCTATGATGCCACGACCCACTTCGAGACGACCTGCGACGATATCAAAGACATCTACAAGCGAATGACGGGCACAGAGTTTGACTTTGCCGAAATGGAACGCAAGAAGAACGACATCTTCGGAGACGGTGCTGACCAGTAAACTAGCTCCAGCTGCTCTTGAATATCAGATATTCAGACGATCATAAtcttaacatttaaagaaaaataaaaaaaaaaaaaggcaaccGAAGTGGGCGAGCTGGCTATCCAAGCGTATGTTTTGCCCTTAATGGAATTTCATGTAAACCGTTAtacaaatttagcatttttgttggGGGGGGGAGAAGGGGAGAAGGTCCTGCCAGTCTGCTTTTTATAATCAGGAAACGAGATCCATTTTGCACTGATTGTTTATCCACGGCCTATATTCGGTTTCCATCATGTGATCTTTATCTCAACCTGCTTAGACATGGGATGTGGAAAGTCCAAAGATGCCAAATAAGATGTGCTCGAGTGATAtgaagaaatgcatatttttaaaatgtggtgTTGGCCGTCAGGGGGAGGGGGATCGGGTTttgcaaaaatggcaaaaagatCTGTTTTGAGTTTGGCCAGGTTTAACAGcacacgtttttatttttaaaagaaactatCTACTTCTAAGATAACTTCCAGGGATTTGCTCGTTCTATTTTCCTACAAATTACAACTGGTGCTTCAACTAGTATCCTGAATATTTAGTTTGCAATATTTCTCCAGTTTCCTTGCGTTTACAGATCGAAGGGAAGTATCAAGCACACACAGTGTAGATAATCTTTTATGTAATCCGTGTCCAACCACACAGTATTTGTTTTGCAATATGCTCATGTGATTTGACATAACTGACCCCCAATTAGCTGTAAATTGTGCTACTTGTCGGAAGGGCAGGGGTTTCTTTCAGCTTTGccttgcatttctttttctgatgGGTTCTGCGTGATTCTAAGGCTACTACACGGAGGTTATCACACGTCAATGGGAAAAGCTGCTTAACTGTAAGTCTGGAATCTGCTtgtctagtgtgtgtgtgtgtgtgttagggagCTCTCCTTCTCCCTCACCTCAGAGCAGAGAGCGGAGCAGCCAGTGTCTCCTCAATGGCTCTGATGTGTTAGCAAGGACCAAAATGTCTATGGCAGTATTGACATGACCGGGGCCCTGTGCAAAATGTCaccaatgttttaaaaaaagtcaacaaaaacaaatgctgaaCGAATGGGGCTCAAATGATTTCTGTACTGCgaagtaaaaatgttaacttgTGAAAAA

Function

GO:

id name namespace
GO:0015031 protein transport biological_process
GO:0050790 regulation of catalytic activity biological_process
GO:0005093 Rab GDP-dissociation inhibitor activity molecular_function

KEGG:

id description
K17255 GDI1_2; Rab GDP dissociation inhibitor

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU38876 lncRNA upstream 196159 5204113 ~ 5205305 (+) True G26196
TU38828 lncRNA upstream 278710 5122473 ~ 5122754 (+) True G26156
TU38827 lncRNA upstream 283222 5117982 ~ 5118242 (+) True G26155
TU38820 lncRNA upstream 289835 5111364 ~ 5111629 (+) True G26148
TU38817 lncRNA upstream 297123 5104031 ~ 5104341 (+) True G26145
TU39034 lncRNA downstream 95030 5505072 ~ 5505372 (+) True G26314
TU39038 lncRNA downstream 99261 5509303 ~ 5509795 (+) True G26318
TU39044 lncRNA downstream 103514 5513556 ~ 5513972 (+) True G26324
TU39045 lncRNA downstream 104310 5514352 ~ 5514581 (+) True G26325
TU39053 lncRNA downstream 108891 5518933 ~ 5519157 (+) True G26333
XM_043236454.1 mRNA upstream 551 5398333 ~ 5400913 (+) True ankrd16
XM_043236677.1 mRNA upstream 3578 5354343 ~ 5397886 (+) False pcloa
XM_043236455.1 mRNA downstream 154 5410196 ~ 5412564 (+) True asb13a.1
XM_043236456.1 mRNA downstream 2605 5412647 ~ 5417987 (+) True asb13a.2
XM_043236195.1 mRNA downstream 111711 5521753 ~ 5540119 (+) True mkln1
XM_043236303.1 mRNA downstream 294439 5704481 ~ 5715620 (+) True cry1a
XM_043236305.1 mRNA downstream 308967 5719009 ~ 5720254 (+) True tnnt2c
unassigned_transcript_304 other upstream 2497 5398880 ~ 5398967 (+) True trnay-gua_2
XR_006250627.1 other upstream 9838 5354332 ~ 5391626 (+) False pcloa
TU38659 other upstream 458729 4929471 ~ 4942735 (+) False LOC122343397
TU38663 other upstream 458729 4935929 ~ 4942735 (+) False LOC122343397
TU38543 other upstream 772565 4550163 ~ 4628899 (+) False G25958
TU39144 other downstream 371902 5781944 ~ 5853381 (+) False LOC122342465
TU39141 other downstream 440387 5850429 ~ 5853381 (+) False LOC122342465
TU39185 other downstream 482943 5892985 ~ 5897771 (+) False LOC122342837
TU39399 other downstream 978795 6388837 ~ 6390927 (+) True vhll
TU39561 other downstream 1815479 7225521 ~ 7227437 (+) True G26692

Expression Profile