RNA id: XM_043236454.1


Basic Information

Item Value
RNA id XM_043236454.1
length 1321
RNA type mRNA
GC content 0.46
exon number 7
gene id ankrd16
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 5398333 ~ 5400913 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TCGTCGACCCATCATGTCCGACCATGCAGTAAAAACATTGGTGGTTTCTGTTGATATTTCAGTAGTAATGCATCGCTGTTGcgatttcttttcctttcagcAGTCTATTTAGAAGCATTTAACTGGGCGAAATGGAGGAAGACGGCACATTAAAGCACTTAATCAAAGCAGTTCAACATGGAGAGCTGTGCACAGTCAGACAGCTACTTAACGAGCACGACAACAAGCAGGCTGTCATCTACACTCATTTTGGGAGATCTGGAGATACTGTCCTGCACTACGCTACCAGACATGGACACATAGACATTTTGCGTTATTTAGTAGAGGAGCTCAAAATGGACACTGAGGTGTATAACAACGACTACAAGAGAGCGCTGCACGAGGCTTCTTCCATGAGTCATTATGAGTGCGTGCGGTACCTCATTGCCAGAGGAGCGAAAATAGACAGTTTGAAGAAAGCAGACTGGACCCCTCTTATGATGGCCTGTACCCATCGAAACCTCCAAGTCGTTTTGGAGCTGCTGAATCACGGTGCTGACCCAGTGCTGCAGAACAAGGATGGATGGAACTCATTCCACATTGCATGCAGAGAAGGAGATCCAGCCATCGTACACCACCTCCTACTGGCCAAACCCCAAGTCTGGAAGACAAAGAGCAAGACTGGAAGAACACCCCTCCACACTGCTGCTATGCACGGCTGTGAGGATGCAGTGAAGATTTTGCTTCAGAGTTGTAGCTATGAGCCTGATGGGAAGGATAGTTGTGGAGTTACTCCCTTTATGGATGCGATAAGGAATGGACACATAGCTATTGCTAAACTGCTTCTTGATAATCAACGGGCATCTCCCTCCGCTGTAGATATTCTCGGAGCGCAGCCTTTACACCAGGCCTCTGTAACTGCTCAGGAAGAAGCGCTTTCTTTCCTCGTGCATAATCTTGGTATTGATGTAAATTCAAGAGCCACAAAACTGGAGCTGACTGCACTGCACTACGCTGCTAAGGAAGGTCACAcaagcacaataaaaacactgctcGCCCTGGGCGCTGATCTACATGCAAGAGACACAAAAGGAAGATCAGCTCTACATATGGCGTGCATAGGGCAACATGTGGACACCGTCAGGATGCTGCTGCAACTGGGACTCGCGGATACTGACGACAATACTGGCAATATGGCAAGACAGTATGCCAAAAAACCTCAGATTATAGAAGTGTTTGAAAGGCTTGAAATGTAATATCTGTGTCGGATGGATAAAACATTGCTTTGAATGAGTATTAAGTAAAAGTGGACaaagttacaaaataaatgctttttatgaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU38876 lncRNA upstream 193028 5204113 ~ 5205305 (+) True G26196
TU38828 lncRNA upstream 275579 5122473 ~ 5122754 (+) True G26156
TU38827 lncRNA upstream 280091 5117982 ~ 5118242 (+) True G26155
TU38820 lncRNA upstream 286704 5111364 ~ 5111629 (+) True G26148
TU38817 lncRNA upstream 293992 5104031 ~ 5104341 (+) True G26145
TU39034 lncRNA downstream 104159 5505072 ~ 5505372 (+) True G26314
TU39038 lncRNA downstream 108390 5509303 ~ 5509795 (+) True G26318
TU39044 lncRNA downstream 112643 5513556 ~ 5513972 (+) True G26324
TU39045 lncRNA downstream 113439 5514352 ~ 5514581 (+) True G26325
TU39053 lncRNA downstream 118020 5518933 ~ 5519157 (+) True G26333
XM_043236673.1 mRNA upstream 447 5354343 ~ 5397886 (+) True pcloa
XM_043236675.1 mRNA upstream 447 5354343 ~ 5397886 (+) False pcloa
XM_043236677.1 mRNA upstream 447 5354343 ~ 5397886 (+) False pcloa
XM_043236678.1 mRNA upstream 447 5354343 ~ 5397886 (+) False pcloa
XM_043236679.1 mRNA upstream 447 5354343 ~ 5397886 (+) False pcloa
XM_043236453.1 mRNA downstream 551 5401464 ~ 5410042 (+) True gdi2
XM_043236455.1 mRNA downstream 9283 5410196 ~ 5412564 (+) True asb13a.1
XM_043236456.1 mRNA downstream 11734 5412647 ~ 5417987 (+) True asb13a.2
XM_043236195.1 mRNA downstream 120840 5521753 ~ 5540119 (+) True mkln1
XM_043236303.1 mRNA downstream 303568 5704481 ~ 5715620 (+) True cry1a
XR_006250627.1 other upstream 6707 5354332 ~ 5391626 (+) False pcloa
TU38659 other upstream 455598 4929471 ~ 4942735 (+) False LOC122343397
TU38663 other upstream 455598 4935929 ~ 4942735 (+) False LOC122343397
TU38543 other upstream 769434 4550163 ~ 4628899 (+) False G25958
TU38544 other upstream 769434 4550163 ~ 4628899 (+) True G25958
TU39144 other downstream 381031 5781944 ~ 5853381 (+) False LOC122342465
TU39141 other downstream 449516 5850429 ~ 5853381 (+) False LOC122342465
TU39185 other downstream 492072 5892985 ~ 5897771 (+) False LOC122342837
TU39399 other downstream 987924 6388837 ~ 6390927 (+) True vhll
TU39561 other downstream 1824608 7225521 ~ 7227437 (+) True G26692

Expression Profile