RNA id: XM_043236455.1


Basic Information

Item Value
RNA id XM_043236455.1
length 1642
RNA type mRNA
GC content 0.43
exon number 6
gene id asb13a.1
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 5410196 ~ 5412564 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AAAGcagtttaatgtaattttgtgGTATTAATTGTTTATCACATGCTTCATGAATATAAAAgttatgtttggcattaaaaagAGCTTGTACACAAACCGTTATGGTAGTGAGCGCTATTGAGGAACTACTTCTCCCAGAATCCTTTTGCGTAATTGCCGTATTCAATCCGTAGTGTCGCAAACCGTAAACCACTGGCGGCTTCTCTAAAGATAGAACAAGTTACTTTATCACCACGTTGTTCGCGTGCTATACGagtaattttttgttaaatgtcaaaTCTTAATAAATCATGGAACTCACCGCTGCCAGGTCAACGTTTTACGGCGACATCGGTCACTGGGCTGACCGCACGCCGGTGCACGAAGCTGCGTCTCTAGGTCGAGCTCTGCAGCTGAAACAGCTGATCGAAGCAGGAGCATCAGTTAATATCGTGTCTGTGGATAACTTCACCCCTCTGCATGATGCCTGCATCCAAGCACATCCCAAGTGTGTTCAAATACTGCTGGAGGCTGGAGCTCAGGTGGATGTGCGCACTATCCATGGCAGTACTCCTCTCTGTCACGCCTGTGCTGCTGGAAGCATAGAAAGTGTGAAGCTGCTGGTGGATCACGGAGCATCGGTCAACCCTTCCCTGACCGCCCTGACGGCTTCACCCCTCCACGAGGCCTGCATACGAGGTAACCCAGACTGTGTAAAGCTTATGATAGACAAGGGAGCACTGCTGGAGGCCTTTGACATTTACTTTGGGACGCCGTTACATGCTGCTTGTGCTAAAGCTCACCTAGACTGCGCCCTGCTGCTGCTCAATGCGGGCGCTAAGGTGAACGCCACCAAGTTCCACGAGACGGCGCTGCATCATGCGGCGAGGGCCGAGAGAGTAGACCTGGTGGAGCTGTTGGTGGAGTTTGGTGGAAATGTCCACATAAGTGATAACTTGGGTCACAAACCAAGAGACTATACAAAACCTGAATCCCCTGCCAGTCTCTGTCTGCTGCACTATGAGAgtaACCCTCTGTCTCTGCAGCAGCTGTGCCGTATCGCCCTGAGGACTGTGCTGGGCACCAGAGCTGTGGAGCTGATCCCGAAACTGGACATATCACAGCGCACCATTGATTACCTCGTGTACAAGTCATAACTTTAGAAAACAGTTTCTTAGAGTCTTATTTTGTTTAGAAACCGTTAATAGACAGCTGTTTGTAAAGTCTTAAATTTGAGtcagttaatttaattatagataaatataagtttatgtttaattaatttcagtGAATATGCTACATTGCCTTAAAATCTTTtgcaatgtaaatgtacaaataatataaCCATTTGTATTAGTGTTGGCCCTGTGATTTTTTTGGACAAccagaaagtgtccaaatacctTTTGTCTTAAAGGCATTGTTTTataacttaaacttaaactttcTTGCTAGTAAATCGTTTGTgatatactttattaaaataaatgccatgGGCTTTCCATCAGGAGGTCCTGAAAGCACTTTAGGAGGTCTGTTgagaagatatatataaaacatatagcACTTAACATTTTCGTGATGTTTAACTATTGAACTCAAAAATGTCTGTCTATTAACCATTATGTATTGTCCATTGTTTGCAATTAAAGGTTGAAAACCA

Function

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0016567 protein ubiquitination biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU38876 lncRNA upstream 204891 5204113 ~ 5205305 (+) True G26196
TU38828 lncRNA upstream 287442 5122473 ~ 5122754 (+) True G26156
TU38827 lncRNA upstream 291954 5117982 ~ 5118242 (+) True G26155
TU38820 lncRNA upstream 298567 5111364 ~ 5111629 (+) True G26148
TU38817 lncRNA upstream 305855 5104031 ~ 5104341 (+) True G26145
TU39034 lncRNA downstream 92508 5505072 ~ 5505372 (+) True G26314
TU39038 lncRNA downstream 96739 5509303 ~ 5509795 (+) True G26318
TU39044 lncRNA downstream 100992 5513556 ~ 5513972 (+) True G26324
TU39045 lncRNA downstream 101788 5514352 ~ 5514581 (+) True G26325
TU39053 lncRNA downstream 106369 5518933 ~ 5519157 (+) True G26333
XM_043236453.1 mRNA upstream 154 5401464 ~ 5410042 (+) True gdi2
XM_043236454.1 mRNA upstream 9283 5398333 ~ 5400913 (+) True ankrd16
XM_043236678.1 mRNA upstream 12310 5354343 ~ 5397886 (+) False pcloa
XM_043236456.1 mRNA downstream 83 5412647 ~ 5417987 (+) True asb13a.2
XM_043236195.1 mRNA downstream 109189 5521753 ~ 5540119 (+) True mkln1
XM_043236303.1 mRNA downstream 291917 5704481 ~ 5715620 (+) True cry1a
XM_043236305.1 mRNA downstream 306445 5719009 ~ 5720254 (+) True tnnt2c
XM_043236287.1 mRNA downstream 437924 5850488 ~ 5862313 (+) True LOC122342465
unassigned_transcript_304 other upstream 11229 5398880 ~ 5398967 (+) True trnay-gua_2
XR_006250627.1 other upstream 18570 5354332 ~ 5391626 (+) False pcloa
TU38659 other upstream 467461 4929471 ~ 4942735 (+) False LOC122343397
TU38663 other upstream 467461 4935929 ~ 4942735 (+) False LOC122343397
TU38544 other upstream 781297 4550163 ~ 4628899 (+) True G25958
TU39144 other downstream 369380 5781944 ~ 5853381 (+) False LOC122342465
TU39141 other downstream 437865 5850429 ~ 5853381 (+) False LOC122342465
TU39185 other downstream 480421 5892985 ~ 5897771 (+) False LOC122342837
TU39399 other downstream 976273 6388837 ~ 6390927 (+) True vhll
TU39561 other downstream 1812957 7225521 ~ 7227437 (+) True G26692

Expression Profile