RNA id: XM_043236457.1


Basic Information

Item Value
RNA id XM_043236457.1
length 4868
RNA type mRNA
GC content 0.56
exon number 27
gene id plekha5
representative False

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 643448 ~ 774561 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AAGGAATCCCGAGTACGCGCGAGCGGGTCGGAGGCGCGCAGCTCGAGCGCTGCTCTCAGTGCTCAGACATGGCGGCGGACCTCAACCCGGAGTGGCTGTCTTGCCTGCCTTCCTCGTGGAGTTACGGCGTGACCCGCGACGGACGCGTCTTCTTTATCAATGAAGAAGCGAAGAGCACAACCTGGCTGCATCCAGTCACGGGAGAAGCCGTCATTACAGGGCACAGAAAAACTCCAGATTTACCCACCGGATGGGAAGAAGGATATACGTTCGAAGGAGCCCGCTGCTTTATCAATCACAATGAGCGAAAGGTGACCTGCAAGCATCCCGTCACAGGCGTTCCTTCGCAAGACAACTGTATCTTTGTCGTCAACGAACAaCTGAATTGTGGGAAACTTGTCCATCCTGTTTTAAACAGACCAGCGACCAAAGCACCAGCGACCGAGAAGAAAGAACGCCCAACCAGCACCATGAGCGAAGCGTCAAACTACACGGGCGGCTCAGACTACACCACACATCCCAGCAGCCCAACAACCAGACTCTCCAGGTCCTCAAAGAAAGTCCACAACTTCGGCAAGAGGTCCAACTCCATCAAGAGGAACCCCAATGCCCCGGTGGTGAAAAACGGCTGGCTTTACAAACAGGATAGTACCGGGATGAAGATGTGGAAGAAGAGATGGTTCGTTCTGTCTGACATGTGCCTCTTCTACTACAGAGATGAGAAGGAAGAGGGGATCTTGGGAAGTATCCTCCTGCCCAGCTTCCACATCTCCATGCTATCTGTGGACGACCACATAAGCAGAAAATACGCCTTCAAGGCGACGCATCCCAACATGCGGACGTACTATTTCAGCACTGACACAGCCAAAGAAATGGAGTCATGGATGAAGGTTATGACGGATGCAGCGTTGGTCCACTCTGAGCCAATCAGAAGCAGGCTTGAGAAGGTAAAGGTTGACTCACGCAGCCCTCAGGAGATGAACAACATGCTGAATCACAGAGTCCTGACCCGACCCGAGATCCAAAACAACGAGAGAAACCGCGAGACGCTCCGCCAGGAGGAGAAGAAGCAGAAAGCCGCGGacaagcagaaagagaaagacggCAGGGTTAGCGTGCAGAAAGATGGAGAGCGATACACCCTCCAGAGAGACGCCGACAACTACACCCTGCACAAAGACGCTCAGAGACTCGCTCTGCAGAAGGACGGAGACCGATACATGCTGCAGAAGGACGTGGACAAATACGTCCTGCAGAAAGACGGCGAGAAATACGCCGTCCACAAAGACGGAGAAAAGTACCTGCTGCAGAAGGACGGCCAGAAATACACGCTGCACAAAGACGGAGACAAGTTCACGCTTCAGAGGGAAGGCGAGAAATACGCTCCGCTGAAAGACGGCGAGAAGATCCTGCAGAAAGACGCAAGGTACCCTCACGCAGACAAACACGTGCAGCAGAAGGATCCGGAGAAACCCGTACCGCCGCCGCGGGAGGGCGAGAAATACGGCTTCCAGAAAGAGGGCGCCGCGGAGCGGCCGCTCACTAAGATCAACAGCATCAAGCTCCAGCCGGCTCAAGCGGCGGCCATCGCTGCGGCCGTCTCGTCCTCCAGACAGCTCCAGAGCGCGGCGGGGGCCGGCCAGTACAAGCCGGCTCAGGTCAACGGCTCCGGGGAGCGAGGAGGAGACAGAAGCCCCGGAGACATGAGCAGCGCGATGACCCAGAGGACCACGGCCCCGGCAGAGCCTGAGCGAACCCTGAGCAGAACCAACTCCATGCAGCAGCTGGAGCAGTGGGTCCGTACGCATCGCACGCGGGCCCCGGACGACGACACCAGGAGCATTACATCCTACCAAACTCTGCCGAGGAACATGCCGAGCCACCGCGCTCAGATCGTCCCGCGCTATCCCGAGGGTTACCGGACGCTCCCGAGGAACATGCTGCGTCCGGACAGCATCTGCAGCGTGGCGGGGTCGGTGTACGACCGGGCGCTGCAGCCCACGAGCACCGAGAAGCGCCGCTCCATTCGGGACGACACCATGTGGCAGCTGTACGAGTGGCAGCAGAGGCAGGCGCACAGCCGGGTCGGATACGGGACGCTGCCCAGCCCCAAAACCATGGGCCAGATCGCCGAGTCCATCCCCACGTCCCCTTCCCACGGCTCTCTGGCCGGGTACCACACCTTCTCCCCCAACCGCCCGCTCAACCCGGACTCCCGCTCTGAAGTGTCCTCGCCCGTGTTTCGTGGGGACCTGACTATAGAGCGCCGGCACAGACAGCATCTGTCCAAGCAGATGAGTCCTGAAGAGTACAGAGAAAACACCTACTTATACAGACCCGAGGAGCTGGACATTGATGCGAAGTTAAGTCGACTATGTGAGCAGGATAAAGTAGTGAGGAACCAAGAGGAGAAACTGCAGCAGCTCCACAGAGAAAAGCACACGCTGGAGACGGCCTTGCTGTCGGCCAGTCAGGAGATCGAGATGAGCGCCGAGAACCCAGCGGCGGTGCAGAGCGTCATCCAGCAGCGGgacgtcctgcagagcggcctgCTCAGCACCTGCAGGGAGGTGTCGCGCGTCAACGCCGAGCTGGAGCGGAGCTGGAGGGAGTACGATCGGATGGAGGCGGACGTCACTATGGCCAAAACTAACCTGCTGGAGCAGCTGGAGGCCCTCGGGAGCCCACAGaCGGAGCCGCCCAGCCAAAAACACGTCCAGATCCAGAAGGAGTTGTGGAGGATTCAGGATGTGGTGGAGGCGTTGAACAAGAACAAACCCAAGAGAAACACAGAACCCAGTTTTCCTGGCGCGAACCCCCTGTCAAACCTGCATAAGAGTGAAGAGTCAGACTCGGTGCCTCCTCGTCCTCCGCTCCCGTACTCGTACGAGGGGGGAGAGCGTCCTCCTCACGCGCCCCGCACCACCCCTCACCGGCCCGAGGACCGCAAGGCTGCCCAGCGCAACGGTGCCCACAGCGGGCCGGATTACAGACTGTATAAGAGCGAGCCGGAGCTCACCACCGTAGCCGAGGTCGACGAAAGCAACGGCGAAGACAAATCTGAGCAGATGGCAGAGAAGGAGCAGGCCGGCATCACCAAAGGTGTAGTTTACCCCGTCGGAGTGGTCAGTCCCAGGACTAAATCACCCATGCCCGAATCCTCCACCATTGCGTCTTATGTTACCTTGAGGAAGAGCAAGAAACCTGATCCCAGAACATCTCAGCCGCAGGACCGTCCTCGCAGTGCTGTGGAGAGCATGAGCAGCGCCGTGGAAGTGGGCCGAACACGTATGAGTGTGGAGGAGCAGATGGAGCGAATCAGGAGGCACCAGCAGGGGGCGCTGCGTGAACGAAGACGGGAGGACGGCTCGCTGTCCCGCAGCCTCTCCTTCACCAAAGACAACCCCTACTACACCCTACAGACGCGTAAGAAGAGCCCGGTGATCTCTCCGGATGAGCAGGACGACCGTAGAGACACGTCGCCCGAGGAGCAACCACAGCTGAAGACCAAACCCACTGATGCAGAAGAAAACTGCAAGAATACTGAAGATGTGGAATCTGGAAACGCCAGCCTGGAGAGCAAGGAGAAAGCGGCCCGACTGGCCTCCATTAAAGAGTCTCTTCTGAAGAGCGCGGGTCCTAAACCGGTGCTGAACCAGGACCAATCAGAGCCGCTGGAGTACCGCAGGACTCTGGCCACTCAGAACAGcttaCAGACCGCTGTCATGGTGCGTGTGGGCACTGAGgaagacgaggaggaggaggatgaggacgaGAAACCCTCCAGTCAAGAGCAGGACGTTTCGTTTGAGCTGAGCAACAGCAAACACGGCGCTCTGATGTCAGTGAACAGTCTGTCGACTCCGCCTCAATCTCCaagctcctcctcctctccgcCGCCTCCGCCCTCCCCCCCACAGCTGACGGACGGATCACacttcatgtgtgtgtgagcggagAGACGGACgaTGAAGCGCAGCGTGTGAGGAGACGTGAAAcaaacacatcatcatcatcatcatcatcgtcagaCAGGAAGTGCCGCCCATCAGCTGCCCGACACACACGGCGACGTCCAGGCCTTAGTTCAAACCCTTCTTTTCTagtgattattatttatattcctCTGGCGTTTTTCTAGTTTGTCTGGGCGTCCGAGGTGCTATCGAACCCTCGCCGATGTACATGAGCTCCCAGACTCCCGGTCAACAGGAAGTGGAGCCGGAGAAGCCCATCGACGCACTGCTTTCAATGGCGTTCATCGCTGGCTTGTTTTATATGGATTTTAATCGATCGCTCCCTTTTAATCGATCCTAGTGTTGGTTTTTAGTCCTCATATCTGTCCGACCCATCccttctttcttgttttctttttgatatgTGTATAAATGATGTACGACTATAAACTTTCAATAAGGTGCCACCGTACTGCTGCCGATAAACAGGATTTGTAAATGATCTGTATTATGTTGGATAGTCCTGCAATAGCCACCACACTGTTTCCCGACACACTCATGAATGTTCCAgcttaccttttatttttctacGGCTGAGATATATTTAACTAGAGAGACGAGTACAGAGTATTAGAGTTTTAAGAAGAGCGTTTCCGGAGGACGGCTTTAGTTTAGAGGAGAATAGCACACGAGGAGCGAGCGTTTTAAAACGGTTGATAAAGCAATAAGCAGGGTTTGGTGTTCAACTTCGATGTATAAACTGTAAAGTTCATgatgtatatactgtacaccGTACAACAAGCAGAGCCGAGACGCAGAAGAGGTTATGTATCAGAGTCAATATGCAAATGTTCATATTTCATCTGTTTTATatcatgtgaaataaatgttgatgtTCTTATATATATGAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU36882 lncRNA downstream 16515 626576 ~ 626933 (-) True G24790
TU36894 lncRNA downstream 19191 623329 ~ 624257 (-) True G24802
TU36891 lncRNA downstream 22860 620177 ~ 620588 (-) True G24799
TU36888 lncRNA downstream 29795 613127 ~ 613653 (-) True G24796
TU36887 lncRNA downstream 30605 612391 ~ 612843 (-) True G24795
TU36938 lncRNA upstream 90127 864684 ~ 933108 (-) False pik3cg
TU36944 lncRNA upstream 149082 923639 ~ 926377 (-) True G24830
TU36989 lncRNA upstream 178908 953465 ~ 957349 (-) True G24863
TU36996 lncRNA upstream 193917 968474 ~ 969351 (-) True G24870
TU37000 lncRNA upstream 293783 1068340 ~ 1068899 (-) True G24874
XM_043237585.1 mRNA downstream 2723 629065 ~ 640725 (-) True aebp2
XM_043236980.1 mRNA downstream 63103 500604 ~ 580345 (-) False pde3a
XM_043236978.1 mRNA downstream 63103 500604 ~ 580345 (-) True pde3a
XM_043236979.1 mRNA downstream 63104 500604 ~ 580344 (-) False pde3a
XM_043236906.1 mRNA downstream 150791 464039 ~ 492657 (-) False slco1c1
XM_043236943.1 mRNA upstream 134377 908934 ~ 915099 (-) True pik3cg
XM_043236181.1 mRNA upstream 340834 1115391 ~ 1120658 (-) True LOC122342410
XM_043236180.1 mRNA upstream 344136 1118693 ~ 1120656 (-) False LOC122342410
XM_043236182.1 mRNA upstream 348110 1122667 ~ 1125124 (-) False LOC122342412
XM_043236184.1 mRNA upstream 348110 1122667 ~ 1125100 (-) False LOC122342412
TU36783 other downstream 452206 186460 ~ 191242 (-) True G24708
TU36763 other downstream 569962 56637 ~ 73486 (-) False si:dkey-97m3.1
TU36762 other downstream 609532 28072 ~ 33916 (-) False LOC122343420
TU36754 other downstream 632347 10833 ~ 11101 (-) True G24689
TU36940 other upstream 134389 908946 ~ 933108 (-) False pik3cg
TU37001 other upstream 294603 1069160 ~ 1070096 (-) True G24875
XR_006250650.1 other upstream 834803 1609360 ~ 1618298 (-) False zgc:113263
XR_006250649.1 other upstream 834803 1609360 ~ 1618298 (-) False zgc:113263
TU37319 other upstream 879034 1653591 ~ 1654807 (-) False ccdc167