RNA id: XM_043236503.1


Basic Information

Item Value
RNA id XM_043236503.1
length 6293
RNA type mRNA
GC content 0.44
exon number 13
gene id celf2
representative False

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 12539057 ~ 12671471 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

gagagaggattcaGACGCTAAAGAAAGGGCCAGCGTACACCCGCCACAACTGAAAGCACAAGGATCGTGTGCGTGCTTGCGTTCGGAGTAACGGCGATGTTGGAGCACTCGTCTGAGCTGGGCTTTGtgccgagtgtgtgtgtggacagcATGCGATACCCATCCACCGCGAACAGCGCTGTCTCCATGAGGAGCACAGAGGAACTGCTGCTGAGTAACGGTACAGCTGGGAAGATGAACGGCGCCCTGGAACACTCGGACCAGCCCGATCCGGACGCCATTAAGATGTTCGTGGGTCAGATCCCTCGCTCCTGGTCCGAGAAAGAGCTAAAGGAGCTGTTTGAGCCGTACGGAGCCGTCTACCAGATCAACATACTGCGAGATCGTAGTCAGAACCCACCACAGAGCAAAGGGTGCTGTTTTGTCACATTCTACACACGGAAAGCTGCCCTGGAggcccagaatgcactgcacaACATAAAGACCTTAACTGGGATGCACCATCCCATACAGATGAAGCCCGCAGACAGTGAGAAATCAAACGCGGTGGAGGACAGAAAGCTGTTCATCGGCATGGTGTCGAAGAAATGCAACGAGAACGACATCCGGGTCATGTTCTCTCCTTTCGGACAGATCGAGGAGTGTCGCATTTTGCGGGGACCAGACGGACTCAGCCGAGGATGTGCGTTTGTCACGTTTTCTACCAGGGCTATGGCACAGAATGCAATCAAAGCCATGCATCAGTCTCAAACCATGGAGGGCTGCTCCTCCCCCATGGTGGTGAAGTTTGCCGACACGCAGAAGGATAAGGAACAGCGGCGGCTGCAGCAGCAGTTGGCGCAGCAGATGCAGCAGTTGAACAGCGCGTCTGCCTGGGGCAGCCTGACCGGCCTGACCGGCCTCACCCCGCAGTATCTGGCATTGCTCCAACAAGCGACCTCCTCCAGTAACCTAGGAGCTTTCAGTGGTATTCAGCAAATGGCAGGTTCCACAGCTAACTCCACCGCGGGTGCGATGGGTTCCCTGGGTTCTCTGGGAACACTGCAGGGTCTGGCCGGGGCCACCGTGGGCCTCAATAACATAAATGCACTAGCAGGTAGCGTCAACATTGCTCACATGCTCTCAGGTATGGCAGCTCTGAACGGCGGGCTGGGCAGCACGGGCCTGAGTAACGGGTCGGCTGGGCCCATGGACGCTCTCACACAGGCCTACTCAGGGATCCAACAGTACGCGGCTGCCGCCCTGCCCACCCTCTACAGCCAGTCCCTACTGCAGCAACAGAGCGCTGCGGGCAGCCAGAAAGAGGGACCCGAAGGAGCCAACCTGTTCATCTACCACCTGCCGCAGGAATTTGGGGACCAGGACATCCTGCAGATGTTCATGCCTTTCGGAAATGTGGTGTCTGCCAAAGTCTTTATCGACAAACAGACCAATCTGAGCAAGTGCTTCGGTTTCGTCAGTTACGACAATCCTGTGTCAGCGCAGGCCGCCATTCAGGCGATGAACGGGTTTCAAATCGGCATGAAGCGTCTCAAAGTCCAGCTCAAGCGCTCGAAGAACGACAGCAAACCGTACTGATCTTAGCACTAGGGCCTCTCTCATGTTACACTGCTAGGAACTCATCTCCATGACTCTATGCTCATCGTTTGCCTAGCATGTCTACGtggcgtacacacacacacaaaaaaaaaaaaaccccgtcTCATCGTCCCGTCATTGTTTCTGATGTCTTTCTGAGTTCTCCTGCTCATAATCTGGTCTCCTTTTACTGATCTCTGTACTTTTGATCTCAGCCTGATCTTTTGGGAAGTTTTTGCATGTGACCtcattttgagcttttttttggtgttttttttttttttttattgctttcgtttggttttgtttgtttgtttggttttcattCGGTTAGATTAACTGGTGAGGAAGGGAGGGAGCGAGGGagggaaagacaaaaaaaaaaaaactataataataataatgtgaaaacGCTGCATTCGCGCTCTAGAGACAGAGTATATTTACTAACATAACCAGAGCATcgttttaagaaaaacaaagataaaaaattaaaaaaaaaaatcctgtggcaaaacaattacaaatatttgcgtttgacttttttttttttttttttttttttttttttttttgtcagatcgtttttgtttctctctctctctctctctctctctctctctctctctctctctttacgttgtgttttttttttgtttttcattcatttaaagtaaacttGAACGTTCAATACAGGGATTGGCGTCGGGGCTTACTGTCGGCAACACTCTTAATTCGAGGCCCGCCGTAAGAAACCCACGCCGGTTTCTAAACGAATAGACTACTTCCACGccgttttaataaaaaaaatggaaaaaaaaaaagctgtctgaTCGATATTAGAATCTCTCAGAGCTTGCTcgtggtttttacatttttcaggcAGTGTAAAGTTTTTTGATAAGGCCATTTTAAGTGGCTTGATTTCTCATTAAAGTCTATATAAAACCACTTTTTTCTAGAGTAGtaaaggtattaaaaaaaaaaacacacacacacaagattgCCCTGTTTGGGGGGAAATGCTACCTACGTGTCACACCTTTTGCTGAACTGACTTACAGTTAGACAATCCGTGGTTTAAATGCACATGAAATGACctatattttatactgtttaaatgtatagaggaaaaaaaaaaaaaacagagtttGTGTAACCCGCGGTCCCGTCGGTGCTTTTCGTGGATAAAGTCGTGGTTTCATCAAGTCTAACAGTCTTATTTGTctcatgtttttaaagagaAGACTAAAAATCAATTTACTTGAACAATAGACAAAGCCTTTCATAagtactattactactacttttTTCGTTTGCGTTTGttcgttcgtttttttttttccctccttgtTTTTTCgttctttatttgattttcatttgatttccttttttttcctttcgaTAGGAGTCCCTCTTTGCTAAATTTCTTGTTGGGTAATTAGCtatataaaaattcttaaaagttACAGTGTCGGCATGTGAAGCATCTGTGTCATTCtattatttcatttctattGTGGGAAACAATATTTAGATGTGTTATGTTGTTCagcaaaatgtgatttttttttttttcttataaagaaaaaaaaacaagatgagTGGAATTTAGTGCCAAATTCTGACGGTACATCCTGCCTACAGCTTCAGTGTTTTACTTGTGAAATTATTTGATAACATGGGTATTTTATTACGTAAGTGTTTTGTATGGAACCCTCATATTTAAagatatagatttaaaaaaggttGTTAACTTGCTCTTCTGTGGTCTTGTTGCCTGAAACTGttcatgtttttgcttttctttcttttttttctttatttgtaaagATGTAAAAAGTGCCCATGTGTCATTATCGCTCtcacaagcgcacacacacacacacacacacacacacatacattcacaggtaagcacacacacacacacacacacacacacacacgcacgcatacacacacctGTGCTAAAGGTTGACCTCACAACCCTCTTTTCTTTGacggtgtgtgtatgtgagccCCTGAGATTGAGTCTCAGCTGTTCtccttatacacacacacacacacacacacgcacacacactcaatacACCACAGTAGGCCCAAATTTGACAGGACAAATTTATCTGATGCATCATGTCTGTCGGCGAACAATTGTATGTGTGATGGGACAAAATATCGACGTATTTATGTGAATCAGGCGTTGAACTTTTGACCATCGTAACATAACACAGGGCCGTCGCGACAGCCGCATAATCATCACGCGACAGCCGCGTTTCCTCTTCGTTAAACTCGAAAACGTCTCAGTGTAGTCTCGCTTCCTGCTGCCTTTATCAGGACTATTTTACGTTCGCAGGACAACCAAAACTCCTGTCCTGATGCCAAAGTAGTTCAGCGCGATCCGCGATGTCCGACAACGCCTGTAGCACTTTGCTGTAAACGTTTACACATCGTTCGAACGGCCCgtcaaaatattgtttacaaaCGTAGTTTACAGGCAGCCCCCTCGAAACCAGTTTACTTCACTCTATAGCACTATTTTATACCCAAGCTCTGCCGTTGCCTTAACACGTCGATCAGTATTAATGGGCTGGAACACATCgctgcacattttaaatgtgtgccaaggttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgttctgTGTGACTGCATACAGATGTGCCATGAAGCGGTCGTCCGTTGTCTGTTCGTCCACGTCGTTTCTAAACGTTAGCCGCCACTAGATCTGCCAAACTTCGCGCCAGTCGAAAAACAAAAGGGACTCGATCGTGAAGCTAGAACAAAATTTGCCTAAATCATTCGTAgtcgttttttatttaaactctcGTACAAACTTGCGCGAATTATGAGCAACCGTTTCAAGTAGGTTTCCGTGCGAGATTTTGGCGCAACCTTTTGGCGCAACCTATGCGCGCGCAAAAATAATTTGCGTACATTGttcgtaaataaaaaaaactaaacaaactaaaCTGTTAACCGACCAACTGCTTTTGTCGCGCGAGAGGAAATTTCGCACGAATGGTTTACACGGAGACGCGTTCTGCTCGTCTTTCGTGAGAGAGGCCCGAAAAAAATGCAAACGCTTTCCTTTAATTTACCCAACAATAACGATTCCGTTCCGTATTGGGAAGTTGGAGTCGGTCGGTTCGCGATGCTCTCTTTGCCAAATCGTATAACCACTAGCACAAACGCAAAAGCACATGCGCACTAGCGAAGTATTAAAATTGACGACTCTCGATGCTCACCCAGCTgacttaaaacttaaaagagTAGCCGATCGTTTTATTCGCAAGAGCGATCGTACTCGAATCACGCTACATTTTTCTCGGAACGCATCTTCGCTTGACCTCAGTCGACGAGTTCGACTCAACGCAACATCGTAacgacgtttttttttttttacctcagcaCAGCGCCGCATCGGGGCTTCTGAAACACCGACAGCCGTTCGTTTTCGGCGTCCGACGCACTCCGTCACAATCAACTTCAGACAAAACAGGGTAAGCTTTCCGCGGCCGGCGCAGTTTCGCACACGCGACATTTGTCAGACGTTCAAGCAAAGCACAAACTCACGAAGGAGTTCTCGCTGAGACTCTCCACTCAGGGGTTTTCCCGCACCACACGCACCCGACAACCCGTTCGTTGTTTCtttcgttttctttctttctcttaagTGCTATTTAAcaagtgtattttaaagaaaaaaacgatGTGTAGTTTCTTTGCATTTTGGCTTATGTCAagttttttggaaatgtatgtgtttatcTAACGTGCCGTAACAAAAGCTTGTCGTCTGTAGATTAATATCATTTCGTTTGATtctaaaaagatttaaatagttttaagtaTTGTCTTGAGAAAAGCCAAAGTCAATGCATTTCAGTGGATTATGTAAGCGTGATACATGTTTGTTTGACAACACTTTGAAAATCTGTCATTGGATGggaatttaaaaagtacaaaaaaagcaGGCTTTCCTATTTCTATCACTGATTGTACTTATGCCTTTTGTACCAGTGGAACTTTTTATACTGgcaattaaaggaaaaaaaaagaaaaaaaaaaaaactacccgACAGGCTGCGCGGCCCCAGCCAGGGGCCCCGCAGCGACTGGTTCCCGAGTTTGATTTCTAGTTGGCGTCCAGAACGTTAGGTTTTGATATAAAGATTTTCTAGAAGAACTTTGGCTTGGTATCTTTAGCCTCCTCTTCTTTATTCTTCACATCGGtatttgctttccttttttttttttttttttttttttttttttttctttttgttttccccGTTCGTTTCCTTTCTCGGAAAGAGGGTCGAGGAGTTTTCCTTTTGGCTTATAAATACGTAAATGCCGTTTGTCTTTACAAAGAGTCTTTACAGCAGCGGTAAGTTTCATTTAGTTAAGTATTGTGCAGTCACCATGATAAAGACGATTAGACGATTTAGAAGTATTTAGTCACCTTCAGTGGATAAATGTATTAGTTTGACAAACAAGATAAAAGTAATTTGAGGACTTTGCTTTTAGCTGTTTAGATTTTTCTGGTTTCTCTGTCTTTGCTGTTAACCTAACTGTGTAGCTGGAACAGTCAgacttatttttgtaaatgtatgttctTGTGTGATGCAGTTTTTTGCCTCTGTCTCCGATATTAAACCATTTTTCCTAATA

Function

GO:

id name namespace
GO:0006397 mRNA processing biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0000166 nucleotide binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU41701 lncRNA downstream 270317 12265665 ~ 12268740 (-) True G28130
XR_006250651.1 lncRNA downstream 300920 12236645 ~ 12238137 (-) True LOC122342788
TU41684 lncRNA downstream 383806 12148132 ~ 12155251 (-) True G28117
TU41640 lncRNA downstream 520056 12018609 ~ 12019001 (-) True G28086
TU41644 lncRNA downstream 541754 11997013 ~ 11997303 (-) True G28090
XR_006250594.1 lncRNA upstream 365310 12988707 ~ 13071520 (-) True LOC122342546
TU41980 lncRNA upstream 365479 12988876 ~ 13071153 (-) False LOC122342546
XR_006250593.1 lncRNA upstream 398726 13022123 ~ 13071520 (-) False LOC122342546
TU42001 lncRNA upstream 553564 13176961 ~ 13177984 (-) False tmem110l
TU42027 lncRNA upstream 604303 13227700 ~ 13227947 (-) True G28349
XM_043236805.1 mRNA downstream 2731 12492354 ~ 12536326 (-) False usp6nl
XM_043236801.1 mRNA downstream 2733 12492354 ~ 12536324 (-) False usp6nl
XM_043236804.1 mRNA downstream 2735 12492354 ~ 12536322 (-) False usp6nl
XM_043236802.1 mRNA downstream 16293 12492354 ~ 12522764 (-) True usp6nl
XM_043236803.1 mRNA downstream 19826 12492354 ~ 12519231 (-) False usp6nl
XM_043236658.1 mRNA upstream 451819 13075216 ~ 13090835 (-) False gata3
XM_043236661.1 mRNA upstream 451819 13075216 ~ 13085560 (-) False gata3
XM_043236662.1 mRNA upstream 451819 13075216 ~ 13085559 (-) False gata3
XM_043236659.1 mRNA upstream 451819 13075216 ~ 13085557 (-) True gata3
XM_043236660.1 mRNA upstream 451819 13075216 ~ 13085556 (-) False gata3
TU41785 other downstream 49901 12481920 ~ 12489156 (-) False cpm
TU41786 other downstream 49901 12482102 ~ 12489156 (-) False cpm
TU41650 other downstream 523290 12014631 ~ 12015767 (-) True G28093
XR_006250735.1 other downstream 993245 11426497 ~ 11545812 (-) False ppfia2
TU41528 other downstream 1114974 11422069 ~ 11424083 (-) False ppfia2
XR_006250598.1 other upstream 693535 13316932 ~ 13361938 (-) False tmcc3
XR_006250597.1 other upstream 693535 13316932 ~ 13361938 (-) False tmcc3
XR_006250596.1 other upstream 701128 13324525 ~ 13361938 (-) False tmcc3
TU42098 other upstream 788227 13411624 ~ 13422539 (-) False G28397
XR_006250767.1 other upstream 1069548 13692945 ~ 13698715 (-) False LOC122343399

Expression Profile