RNA id: XM_043236513.1



Basic Information


Item Value
RNA id XM_043236513.1
length 1164
RNA type mRNA
GC content 0.45
exon number 8
gene id zcrb1
representative True

Chromosome Information


Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 6951892 ~ 6954640 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


TTAGAGAGCGTGAAAGCGGTGCCTCTTTATCTTCCGGGTCGCGCTGCGTTGATGTTTTGAATCGGATGTGCAGTTTAACACGCTTATACAAACTCAGTTATCGTCAATATTGTAAATATGCTTTAAATCCGCACGTTTCTGGCGATTAAatatcaAAGATAAATATGAGCGGTGGTTTAGCGCCCAGCAAAAGCACCGTTTACGTGTCTAACATCCCATTCTCCTTGACTAACAGCGATCTGCACAAGTTGTGCTCGAAATATGGCAAGGTGGTGAAGGTCACCGTTGTCAAAGACAAGCGGACGCGGATGAGTAAGGGAGTGGCGTTTGTGCTGTTCCTGGACAGAGAGTCCGCTCATAATTGTGCCCGATCGCTAAACAACAAACAGCTGTTTGGGAGAACGGTGAAGGCCAGCATCGCCATTGACAACGGGAGAGCTGCAGAATTCATCAGAAGGAGAAACTACTCTGACAAATCTAAATGTTATGAATGTGGGGAAGAAGGGCACTTGAGTTACGCTTGTCCTAAAAATTTGCTTGGAGAGAGAGAACCTCcacctaaaaaagaaaagaaaaagaagaaaaagctgCAGCAGCCTGAGGAGCCGGAACCAGAGGACAGCGAGGAAGAAGGAGAGGACCCAGCACTGGACAGTTTAAGTCAGGCAATTGCTTTCCAGCAAGCGCGTattgaggaggaggagaagagaaggAAACGGCTCGCAGAGGACGCGTCTCAAGCATGTACTTCAGAGGACACCCACAAACCCAAGATCAAAAAGAGCGCCTACTTCAGCGACGAGGAGGAGCTCAGCGACTGACTCATACTTGTGTGTTCGGAACACATCGCCTCTTCTCAACCACTCTTACCTATTAAGAAGGTCACATATTGATCTGAATTTCTAATTTTGCCCAACTACGTTGCAGGAAGTCAGACAGAAAAACGGCTCACCTTGATCCGAGATGTTTGTTGTCGTTTTATGCCCCTCTCTCAGAAAATGACAAATCTTGGGTATGTAGTattgagattttaaatatcctGCAGAAACGgtctgtgaatgtgtttttttgtaatcttgTAAATAAAGCGCAGTTTCGTGTATTTCAGAATTACTCTCTTCTCATTGTTCCAGGAAGCGTGGAAAATAAAcggttttaaaataa

Function


GO:

id name namespace
GO:0006397 mRNA processing biological_process
GO:0008380 RNA splicing biological_process
GO:0005681 spliceosomal complex cellular_component
GO:0000166 nucleotide binding molecular_function
GO:0003723 RNA binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K13154 ZCRB1; U11/U12 small nuclear ribonucleoprotein 31 kDa protein

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU39728 lncRNA downstream 43397 6845559 ~ 6908495 (-) True G26790
TU39736 lncRNA downstream 88510 6862723 ~ 6863382 (-) True G26796
TU39733 lncRNA downstream 89645 6860074 ~ 6862247 (-) True G26795
TU39723 lncRNA downstream 108043 6841974 ~ 6843849 (-) True G26787
XR_006250660.1 lncRNA downstream 562691 6377116 ~ 6389201 (-) True LOC122342911
XR_006250751.1 lncRNA upstream 212166 7166806 ~ 7189549 (-) True LOC122343305
TU39779 lncRNA upstream 259694 7214334 ~ 7220911 (-) True si:dkey-261e22.4
TU39780 lncRNA upstream 364862 7319502 ~ 7319725 (-) True G26832
TU39813 lncRNA upstream 418533 7373173 ~ 7373595 (-) True G26846
XR_006250789.1 lncRNA upstream 445026 7399666 ~ 7456641 (-) True LOC122343472
XM_043236566.1 mRNA downstream 995 6940446 ~ 6950897 (-) True yaf2
XM_043236564.1 mRNA downstream 11596 6934093 ~ 6940296 (-) False gxylt1b
XM_043236563.1 mRNA downstream 11596 6934093 ~ 6940296 (-) True gxylt1b
XM_043236565.1 mRNA downstream 11596 6934586 ~ 6940296 (-) False gxylt1b
XM_043237094.1 mRNA downstream 158457 6792367 ~ 6793435 (-) True akap14
XM_043236510.1 mRNA upstream 15907 6970547 ~ 6992898 (-) True prickle1b
XM_043236509.1 mRNA upstream 15907 6970547 ~ 6980079 (-) False prickle1b
XM_043237882.1 mRNA upstream 130674 7085314 ~ 7091042 (-) False pus7l
XM_043237881.1 mRNA upstream 130675 7085315 ~ 7091042 (-) True pus7l
XM_043237884.1 mRNA upstream 130676 7085316 ~ 7091042 (-) False pus7l
TU39663 other downstream 212297 6737641 ~ 6739595 (-) False il22
TU39610 other downstream 590449 6350503 ~ 6361443 (-) True msrb3
TU39270 other downstream 1011893 5938055 ~ 5939999 (-) True mrps33
TU39262 other downstream 1038354 5909473 ~ 5913538 (-) True G26462
TU39180 other downstream 1098526 5850404 ~ 5853366 (-) True G26414
TU39958 other upstream 600475 7555115 ~ 7558453 (-) True G26951
TU40263 other upstream 1293271 8247911 ~ 8249225 (-) False LOC122343432
TU40311 other upstream 1505866 8460506 ~ 8468028 (-) True G27232
XR_006250786.1 other upstream 1939544 8894184 ~ 8941271 (-) False LOC122343470
XR_006250788.1 other upstream 1941152 8895792 ~ 8941271 (-) False LOC122343470

Expression Profile