RNA id: XM_043236515.1


Basic Information

Item Value
RNA id XM_043236515.1
length 3535
RNA type mRNA
GC content 0.44
exon number 19
gene id slc26a5
representative False

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 7481349 ~ 7494492 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AAATCCAGGATGTGCGTCTTAGAGTGACTGGTGTCATTTGTCACAGAGGAgctgttttatttctattttcttgCTTTATGTGCCAGTGCGGTGCTATTGCAGTTTTCTCTACAGAGCGCTTTCTACCATTCATTgaaaacaggaagaggaagtagAGCAAGTACACGAGTTCATTCACGAGGTCGTCGTAGCCTGACATGCCTTTGTTTCCACTGCTGCTATGGAGCGCTTAAGTGCAAGTGAGCAACCGTCCGCTACAACGATGTACCATGTGGAACGTCCCGTGTTCAATGAAGGCTATATTGAGTCGGAGCTCCTGCATAGGAAGAAGAGGACAACCAAGTCCTTTCAACGGAGAGTGACTGAGCAGCTCCGcTGTTCATCTGATAAAGTCAGATCTGTTGTATTTGGGTTTCTGCCCATTTTAACATGGCTGCCGTCATATCCACTAAAGGAATACTTGTTTGGAGACATAGTCTCTGGTATCAGCACGGGTGTAATGCAGCTACCTCAAGGTCTTGCGTATGCGATGTTGGCAGCGGTTCCCCCAGTGTTTGGTTTATACTCGTCGTTTTATCCCGTGCTATTATACACGTTCTTTGGTACCTCCAAACACATATCAATAGgtacTTTTGCAGTAATCAGTCTGATGATCGGCGGGGTTGCTGTAAGGGAGGCCCCAGACTCAATGTTTGCAGTCAACGGGACAAACGCGTCACAGGTTGTGGATTTTGTGGCTCGTGACGCCAGAAGGGTGGAGGTGGTTGTAGCTCTGACAACCCTAGTAGGAATCATTCAGTTTGTTCTGGGTCTGCTGAGATTTGGCTTCTTGGCGATTTACCTCACTGAACCGCTGGTGCGAGGTTTCACCACAGCTGCTGCTGTGCACGTCTCCGTGTCGCAGATCAAGTACCTGCTGGGAGTGCACACTGCGCGCTTCAATGGGCCTCTCTCTGTAGTACATAGTCTTGACGCTGTCTTCAGGAACATTGCGAGCACTAATGTTGTCACTCTAATTATTGGACTGGTCTGTACGGTGTTCCTGTACTTCATCAAAGATCTCAATGAACGCTTCAAAAAGAAGCTACCCATCCCCATCCCTGGAGAAATCATTGTGGTAATTGTGTCCACTGGAGTCTCGTATGGCATGGTTATGTCTGAAAACTATGGAGTAGAAGTTGTGGGTAAAATTCCCACTGGgttGCTGCCACCCAAGATTCCAGACTTCTCAGTCTTTCCTAACCTCTTCCCAGACGCCTTCGCTATAGCTGTTGTCGGCTTCTCGATTGCAATATCATTAGCCAAAATCTTTGCTCTTAAGCATGGCTACAGTGTGGATGGAAATCAGGAGCTTATGGCGCTGGGACTTTGTAACTTTATGAGTTCATTCTTCCACACGTTTGTCGTTACCGCCTCAATGTCTCGCAGCCTGGTACAGGAGAGCACAGGAGGGCATACTGAAATCGCGGGATTCTTGGCATCCATACTTGTGCTACTGGTGGTGGTGGCCATTGGATTTGTCTTTCAGCCTTTACCTACAACGGTGTTGGCTGCTATCATCATAGTCAATCTTCTTGGGATGTTTAAGCAATTGAAAGACATTCCTTCATTGTGGAGAACAAGCAAAATTGAACTGGCGATTTGGCTGGTGTCCTTTTTCGCCTCAGTTCTTCTGGGTCTGGATTATGGTCTGGTGGTTGCCATGGGCTTTGCCATACTCACAGTAATTTACCGAACACAATGcccGAAAAATGCTGTTCTTGGACAAATCCCAGATACGGGACTGTACTGTGATGTGGATGAGTACGAAGagGCTGAGGAATGCTCAGGGATTAAGATTTTTCAGTCCAATACTTCCATATACTTTGCAAACAGTGACCTGTATGTGAGCGCCCTCAAGGCAAAGACTGGAATCGACCCAGCACAACTGCTCGCCGGCAGGAAATCACagctaaaatatgcaaaaagagACAACAAGGAGAAGAAGGCTGTAAACCACTGTTCTCCAATGAAGAAAAATGCAGTTGTCCTATTgGATGTGGAGCTGGGCGTCACTCATGAAGTGGTGACTGGGGCGAAAAAGCAGATGAATGATGTGTATACCAATGGCCAGATGAATGAGAACCACACTGAGTCTGAGTCGGAGGACGACTTCTTTCTCCAGCGTCTGACCCCCATTCACACCATCATACTGGACTTTACTCCCGTTAACTTTATTGACTCAGTAGGAGCCAAAACAATTAAATCAgtGATAAAGGAGTTTGCAACAGTCGATGTGAAAGTTGTGCTTGCTGGATGTAGCAGGACTCTTCTCTCTGAGCTCAGGACACTAAACTTTTTCTGTGAGCCCGTGACCCCTGACCTCATTTTCCCCACCATTCATGACGCAGTGTTGCATTGTAAACGCTCGAGGGGCGTCTCCGTCTGCCTTGATGTCCAGTGAAGTCGCACAAACCAAACTGAGGGACAGAACATGGATAGAGTGCTGAAATAAGCACAAGTACTGTTACTCCTGAATCACTTTAGGGTGTCGTGATAACGAGGAGACAGGCCAAAATGTTTTAGatggaaacactttatttaatgtgaatatACTAGCAAATGTTGAGCTTAGTATGATCGGTGCTGTTTTATTGCACCAGACATAGTCATATGCTCCACTGCAGTTTGTTACTAATGACTATAAAACACTTTGTACCTTCTGttctttttaagtgcaattaGTGTAGATGGAATTTTAACCGGCGTTTATTTTGTAGCGCTGGTTCAAATCCTTTATTGACATTCCTGTAAGCTTATTTTTATGATAGAAATTAAGTTGTACAATTGCAcacgtttttctttttgctgtatttaatttttgttttatgtttttttggaatttttCATCTGACTGTAGCATTCGGTGGAAAAAGAGCTAAAGTGTCGCATCTTTTTAAAGACATGATCAGATAATTGCACTGTTGGTGAAGATGCTGCTTTTTGTTGCATGATATACTTTAATCTGATGTTTCTGAGAACACGCTTGCCAGATATTGAttggactgttttgttttaggCGTTCCCCCTCCTCCAGTCAGTCGGTGACACATTTGGCTAAAGGCTTATCTAGGTTGCTCTAGGGGTTCTTGGAACCAATTGAGaacaatattaacataaagGGGTCTTAGTTAGTGATTACTGAAACGGCTGATTCCACGAAGTCTTGCAAATGTTATGTAGTTGTTCTTGTATTTAGAACATTATATGGAAAGGCCACAGGCTGAGACTGTCTTGGACACGTTTGGCACACATTTGCCTATAAACGGTCCACCCCTAgcactttttctttcaaatcaagTGTTCAGTTATTCTTTGATTTTTCTGTACCGATGCTTTTTCGTTTCAGTAATGATGACCAAAGCTCCACAATTAGTTGGAACTGCATATAACATGGTgcatattattgtgtttttatgctgGTGTggatttaagatatttttgtataataaatgcaaatcagTGCTCTAAATTATTAAACGTTTCTTTCTCAAAA

Function

GO:

id name namespace
GO:0042391 regulation of membrane potential biological_process
GO:0019532 oxalate transport biological_process
GO:0034220 ion transmembrane transport biological_process
GO:0008272 sulfate transport biological_process
GO:0006821 chloride transport biological_process
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0019531 oxalate transmembrane transporter activity molecular_function
GO:0015301 anion molecular_function
GO:0008271 secondary active sulfate transmembrane transporter activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006250789.1 lncRNA downstream 24708 7399666 ~ 7456641 (-) True LOC122343472
XR_006250790.1 lncRNA downstream 24708 7411325 ~ 7456641 (-) False LOC122343472
TU39864 lncRNA downstream 24751 7430094 ~ 7456598 (-) False LOC122343472
TU39813 lncRNA downstream 107754 7373173 ~ 7373595 (-) True G26846
TU39780 lncRNA downstream 161624 7319502 ~ 7319725 (-) True G26832
TU39965 lncRNA upstream 360257 7854749 ~ 7856511 (-) True G26956
TU40056 lncRNA upstream 533048 8027540 ~ 8027742 (-) True G27031
TU40059 lncRNA upstream 536271 8030763 ~ 8034539 (-) False G27032
TU40060 lncRNA upstream 536271 8030763 ~ 8035012 (-) True G27032
TU40084 lncRNA upstream 626854 8121346 ~ 8121708 (-) True G27051
XM_043237972.1 mRNA downstream 3942 7469919 ~ 7477407 (-) False prdm4
XM_043237971.1 mRNA downstream 3945 7469919 ~ 7477404 (-) True prdm4
XM_043237539.1 mRNA downstream 11536 7461114 ~ 7469813 (-) True akr1b1.2
XM_043237541.1 mRNA downstream 11583 7461114 ~ 7469766 (-) False akr1b1.2
XM_043236618.1 mRNA downstream 163294 7225509 ~ 7318055 (-) False LOC122342649
XM_043237121.1 mRNA upstream 23700 7518192 ~ 7527126 (-) True klhdc10
XM_043237122.1 mRNA upstream 23700 7518192 ~ 7527125 (-) False klhdc10
XM_043237126.1 mRNA upstream 78389 7572881 ~ 7588417 (-) False nrf1
XM_043237127.1 mRNA upstream 78389 7572881 ~ 7588249 (-) True nrf1
XM_043237128.1 mRNA upstream 82277 7576769 ~ 7588417 (-) False nrf1
TU39663 other downstream 741754 6737641 ~ 6739595 (-) False il22
TU39610 other downstream 1119906 6350503 ~ 6361443 (-) True msrb3
TU39270 other downstream 1541350 5938055 ~ 5939999 (-) True mrps33
TU39262 other downstream 1567811 5909473 ~ 5913538 (-) True G26462
TU39180 other downstream 1627983 5850404 ~ 5853366 (-) True G26414
TU39958 other upstream 60623 7555115 ~ 7558453 (-) True G26951
TU40263 other upstream 753419 8247911 ~ 8249225 (-) False LOC122343432
TU40311 other upstream 966014 8460506 ~ 8468028 (-) True G27232
XR_006250786.1 other upstream 1399692 8894184 ~ 8941271 (-) False LOC122343470
XR_006250788.1 other upstream 1401300 8895792 ~ 8941271 (-) False LOC122343470

Expression Profile