RNA id: XM_043236526.1


Basic Information

Item Value
RNA id XM_043236526.1
length 3219
RNA type mRNA
GC content 0.45
exon number 15
gene id impdh1b
representative False

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 9641248 ~ 9654380 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CCTCAGCGAAAACGGACGCTTCACAAAATGGCCAAATATAAGCAGAAAGCTATTAAAATGGATTAATACCAGTTCCAGATCATGTTTCTTGAGCGCCGCTTTCCTGAAGAGCTAATCCCCAACTCGTTTCTCTGGAGTATGGCAGACTATCTTATAAGTGGAGGAACGGGCTATATCCCCGATGATGGACTGTCTGCCCAGCAGCTCTTTTCCGTTGGAGATGGTCTCACCTACAATGACTTCCTGATCTTGCCTGGCTTCATTGACTTCACCTCAGATGAAGTGGATCTGACCTCAGCATTGACCAAGAAAATCACACTGAAGACCCCACTCATCTCCTCTCCTATGGATACCGTTACTGAATCCTCAATGGCCATCGCCATGGCACTGATGGGTGGAATTGGCATCATTCACCATAATTGCACACCAGAGTTTCAGGCCAACGAGGTGCGCAAAGTGAAGAGGTTTGAACAGGGTTTCATCACTGATCCAGTCGTTTTGAGTCCTCGTCACACTGTAGGTAATGTACTTGAAGCAAAGGTTCGACACGGATTCTCTGGAATTCCCATAACCGAGACCGGCAAGATGGGCAGCAAACTGGTCGGCATCGTCACGTCACGAGACATTGATTTCCTGTCTGAGAAAGATAATAACAAACCCCTAGAGGAGGCCATGACTAAAAGAGAGGATCTTGTAGTTGCTCCTGCTGGCGTGACACTAAAAGAAGCCAATGACATCCTGCAACGCAGCAAAAAGGGTAAACTGCCCATTGTGAATGACAAGGATGAGCTGGTGGCCATAATAGCCCGCACAGACCTGAAGAAGAACAGGGACTACCCTCTGGCCTCCAAAGACTCCCGCAAACAGCTGCTGTGTGGTGCTGCCATCGGCACCCGTGAAGACGATAAATACCGTCTGGACCTGCTCATGCAGTCTGGGGTGGATGTAGTGGTTTTGgattcgTCACAAGGCAATTCCGTATACCAGATTAACATGATCCATTACATCAAGCAGAAGTACCCAGATCTGCAGGTCGTGGGAGGGAATGTGGTTACAGCCGCTCAGGCGAAGAACCTGATAGACGCAGGGGTGGATGCGTTGAGAGTGGGAATGGGCTGTGGCTCTATCTGCATCACACAGGAAGTCATGGCATGCGGGCGGCCTCAGGGCACCTCCGTGTACAAGGTGGCCGAGTATGCTCGGAGGTTTGGGGTGCCAGTCATCGCGGATGGAGGCATCCAGACGGTCGGCCATGTGGTGAAGGCTCTGTCCCTGGGGGCATCGACAGTTATGATGGGATCTCTGTTGGCCGCTACCACAGAAGCACCGGGCGAGTATTTCTTTTCTGATGGTGTGCGACTAAAGAAATACAGAGGCATGGGCTCACTAGATGCCATGGAGAAAAACGCCAGCAGCCAGAAACGATACTTCAGCGAGGGCGATAAAGTGAAGGTGGCTCAGGGTGTGTCGGGGTCAGTGCAGGACAAAGGCTCAATCCATAAATTTGTCCCGTACCTCATCGCTGGAATCCAACACGGCTGCCAAGACATTGGTGCAAAAAGCCTCTCTGTGCTTCGGTCCATGATGTATTCTGGAGAGCTGAAGTTCGAGAAGCGGACCATGTCTGCTCAGGTGGAGGGTGGCGTGCACGGACTTCACTCTTATGAAAAGCGTCTTTACTAATGGAGGGGGACAGAAAACGGATGGGAAACAGCGACCAAACACCTCAGACAAATCCTAGAACTTACCCCCACCCTGCCAGAACCCGTTCTCTGCTCTTCACCGCTCCTCTGACACGACCACCACAGTGAGATACGGAGAAGAGAAGTATTAAATGAGTTTGAGAGCAGGACCGCAAACTAATTCAGTCCCCCCCAAAAACATGGCAGTTGCACTCAAGGGAGCATCAGGGTTACCAAAAAgctgcttgtttgtgtgtttttgcagctGTGTTTGAGCAGACTGGCAGAAACATTTTTCAGCGAATATTCTTGAAagccttttttcccccctcccaAACTGAACCATGTTTTTTgtcttgaatatttttataaggCAGCATTAGTGTCTATATCACCGTATCCACCTGCAAAATGACTGCTGCCTTCAAACCAAGTTCTCCAGCTGTACTTGAGGCAATCTTTTCTGTAGTAGATTTGTAACTACTGAAGATGCTatgagatatatttttattttagaaggcAGAGAAACATAGCAAATTAATGTCGGTTTTATGATCGTTAAATGTCTATTGTATTATTGGTGGGTCAGTTTTCTCTACGTCCGCCATCCCGCCTCCTGTAAACTGTGGGTACGATTCATACTGAAAATAACAATACCAAAACCGATATCTGTAGATATACGAAGTTGCTCTGAGAGTGTCATGTGTCTGGattgtatttttgaccaaaaagCTGGAACTTATACTGAAGGGTTTGATGATTATCAAGGTAAATTTATTGCTGACTTTTAATACAGTCTTTTGAGGAATTTTAAAGACGAATAGTAATTATGGGATCTGTGTGAATGCAGTTTGCGACTCTGAGTGCTGTACAGGTATGAAGAGTATTCATTTGCATGCtgcgtgtgtttttctttttttttatatatatatatatatatttacataattgcCAAGTGCATTTTTGTTAACTTGCCTATTTAATCTTCTataaaagccaaataaatgcTGTGAGTATCCTGGTCTCAGGATATGTTTGTCCATTTAAATGTCCCCTACAGTTTTGTGTGTTGGGTGGACCAGTGACATGCCTTGAATTGTGTAATAAATGAAGGACACCTCTGTCTTAACCCGAAACACACCATTCATGCTCGCCAGATCCTGTGGCTTCATATAACTATCACTGCCAAATGAAGCATGTCAACCATATGAATTGAAATGAGtgtttttgtaatacattttcagtacTATTTGTTTAGCTTTTTGCAGTTTCTagaggttttttattttttatctcagCATTAAATACGTGGACACAATTATTCAAGCTGTACAAAATTCTCAGTGTAACGTTGTACAAAGACACACTTTGCATCCTTTTACATCAACTGGATGTTGTTTGTTAGTGTGTTGAATTGCCCACAGTCACAGTCTCTGACAACTCAAGAGCCAAGTTTGTTTACCACGGTGTACTCAACTGAGGTTGCATATCCTATTCagtattgtttaaaaaagaaataaaagtacttAATCTGTTA

Function

GO:

id name namespace
GO:0006177 GMP biosynthetic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003938 IMP dehydrogenase activity molecular_function
GO:0046872 metal ion binding molecular_function
GO:0030554 adenyl nucleotide binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU40761 lncRNA upstream 87907 9554960 ~ 9556718 (+) True LOC122342620
XR_006250619.1 lncRNA upstream 88408 9554973 ~ 9556217 (+) False LOC122342620
TU40744 lncRNA upstream 107538 9536610 ~ 9537087 (+) True G27498
TU40618 lncRNA upstream 136697 9504080 ~ 9507928 (+) True wnt7ba
TU40610 lncRNA upstream 148972 9495434 ~ 9495653 (+) True G27407
XR_006250603.1 lncRNA downstream 6107 9660487 ~ 9673677 (+) True LOC122342587
TU40854 lncRNA downstream 32119 9686499 ~ 9872003 (+) True G27562
TU40944 lncRNA downstream 503779 10158159 ~ 10257553 (+) False G27629
TU40958 lncRNA downstream 608489 10262869 ~ 10264200 (+) True G27643
TU40968 lncRNA downstream 633098 10287478 ~ 10365571 (+) True G27651
XM_043238006.1 mRNA upstream 60113 9581569 ~ 9584512 (+) True bik
XM_043238007.1 mRNA upstream 60113 9581570 ~ 9584512 (+) False bik
XM_043236981.1 mRNA upstream 67664 9556829 ~ 9576961 (+) True slc26a3.2
XM_043236573.1 mRNA upstream 90065 9545687 ~ 9554560 (+) True slc26a4
XM_043236982.1 mRNA downstream 61230 9715610 ~ 9722466 (+) True LOC122342846
XM_043237000.1 mRNA downstream 68727 9723107 ~ 9743552 (+) True LOC122342860
XM_043237006.1 mRNA downstream 68727 9723107 ~ 9743552 (+) False LOC122342860
XM_043237002.1 mRNA downstream 68727 9723107 ~ 9743552 (+) False LOC122342860
XM_043237001.1 mRNA downstream 68727 9723107 ~ 9743552 (+) False LOC122342860
TU40736 other upstream 54307 9587319 ~ 9590318 (+) True G27490
TU40764 other upstream 66051 9577315 ~ 9578574 (+) True G27508
XR_006250785.1 other upstream 249897 9381542 ~ 9394728 (+) False cfap54
TU40537 other upstream 462393 9168776 ~ 9182232 (+) False G27360
XR_006250548.1 other upstream 1101913 8533816 ~ 8542712 (+) False etnk1
TU40943 other downstream 503779 10158159 ~ 10203768 (+) False G27629
TU40942 other downstream 544266 10198646 ~ 10203768 (+) True G27629
TU40966 other downstream 711372 10365752 ~ 10367912 (+) False lamtor4
TU41104 other downstream 1045166 10699546 ~ 10700125 (+) False zmp:0000000650
TU41106 other downstream 1053259 10707639 ~ 10708872 (+) False LOC122342850

Expression Profile