RNA id: XM_043236532.1


Basic Information

Item Value
RNA id XM_043236532.1
length 5165
RNA type mRNA
GC content 0.40
exon number 26
gene id LOC122342594
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 16398632 ~ 16427186 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GGgttagctcacccaaaaatgttaataatttctCACCCTCCTGTCATTCCAAATTTATATGACTTAATATGATGATATCATAAGTGAAACCTGGGAGGTTTCTGCTCCAGCTTTGAAGGTCTAAGTACCCAAAACGTATGTGCAAGAAATTCCAAAGCTTAGTTTAATCAAAGCTTAGAAAAAGCATTCAGCCTTATGAACGCTAAAAATACTAAAGACTTACCAGACTTTAAAGATCTCAAGCATTTAAATAGACAACAGAACATGACTTTTGGTGTGTGTTCCGgtatagttacattttaagttattgGCCTTAgacctttaatatttaaacatcatgGTTAAGTAAAGAATGCAATGTTCATCACTGCAAGTTTTTATGCAATGagatcaaaatataaaaatataattctaatCAACACTTCACGATTGATTGATTTTGGCAGCTTTAAtagtaaaaacatgtttatcatatataaaggttttcagaagaattgcacatttatttatttaatatccatACATGTTGGTCAAtcttaatcaatttttttaagaaaatcaaAATGGCAGGCCAGACGTTTCCCTGTTTATAGTTCATTAGTATCAATggttaattaataattagtatcAATGTTATAGGCATGATCCGAGGATTCTTTTAAAAGTCAATATAACATGTAGAAATTGACTGAACcatgtaataatatatcataatttttttaccaCAAGTTGGCACTGCcccaaatgtttttgagcatctTTAGAACATGTTTCGATAACTATGCAATGTGTTtgttaaatacacattttactccaaaattaaaaatgtccgACACTAATCATTTTGACTTCATGTCACGCATTAAATCTTGtagttacacatttatttaacactttacatgtacttactatttaagtttgcataattgcatgcaagtatCCCTGATCCTAAACCTAACTGTATAGTAAGTACATAATtagtagttaattaatattactctgtACTTGTAAAagtgtaattacactgtaacaagcaCACCTGAAAATAAAGTGTAGCTATAAATTTAGTTCACTCGGCAGCCATGCTTTTAATGTGCCCGAATGGTGCTTGCTTAAATGTAAGTACTTCTCTGAAACATctataaatatcaaaaatacttttataacaCTTAAAATCACAacatcattgtaatattttctcttttttttattaatttatgggCAAGCGaaatctgctgtttttttaattaccaaaCAACTACACGAATGATAAACTACAGTAAAATGCCTCCCGGTTACAAAATAACAAACTCTATAACAACTAAACAGCTGAACTATGTGACTATGTGGCTTCTGTCTTAAATTTGGTGCAAccactatattttatttgtgaccTAACTGTATTGTTAATGCTGCTGTGGTAAATTTTTGCTCTGGTATTTGTTCCGGTCAAACGCACAAGGTGTCCAGGATGTCAATGATCTATTTGCACGTAAACACACCCATCAATCCCTTCAGCCTTCGAAGCATGTCTCTGCGCGATTACCTCATAAAGCAAAGCTTCCTTTATGGCCTCCTGCAGGTGTTTGCTTGGCGGCGGGTGGATTTTGCCTCTAGGGTCAGTGAACAAAGTACACACGAGTCCGCACGACGACTGCCATTTTCATTGAATAAGAACCTCTTTTTTCGGATTCTgtatacatttctaattatttcaTTGTAAGAATACATCTACCGACGGTGTATGTGAAGTTACTGATGGATTATACTTGAGCTGTTTACTTGGATGGGTCGAATCCAACAGAAAAGAAGTCTGCATTTTGGGCGGAAAGTGCTTTTATAGTAGAAAGTTTTGACAAAACTGGAACTAATTCGGAAATTTCAATGGATGTTCTTGGAGAAAATGAGGCACTGCAGCAGTTTTTTAATGGACAGGATGTGAGTGGTGTGTTAGAGAGTGCTGTGGTAGACACCAGTATTCTGGAGCAGTATTTGAGCAATGAGACAGATCCCACTTTTATGTTACCCGACTCGCCACCAGATTCAGGATCAGAGCGCAGTTCTCCACCACAAATACCAGATTCAAGAAGGTCACCGGAGCAAAGCAGCAAGAATGTGTATAGACTATCAGAAGAGTCCTTCCCTCTGTCTTGTCCCTTTAAAGACAGGAAACATGATGTTGGCATACCCCTTGGGAAACAAATTAAAGACATTTCACCTGCTTCACTCCCTCAGTACAGTCTCAACACAGCTGAGAGTTACACACAGGCAACCACATCCCATAATGCACCCATCCATGCTGTCCCACTATATGCTCAGTGCCCACCAATGGGTCTTCCGACAGGACACATGCCAGCTAATGCAGCTGCTGCCTCCTCATGTGTGCCCCACGCAATGTGCTCAGAGACAATGTATCCTCATATGCCCCCAAAACATGATCAACGTGTAGGAAATATCTTACATGAGAATAAGAAAAGAAGAAGGTCAAACTCTTTTGAGGGGCACACAGAGCGGCACAGGTGTGCTGACCCAGTTTGGACCAAACCAACATTCTGTCCAGAAGGTGGATCATATGAAGCACAGTGTTATGACAGTGACACAGCTGGTGTAAGTCCAGTGGGCAGTGTGCACCAGCTGCTCACTTGGGACCAGTATCAGCCCAGTCATTGGTGCTCACTCCACAACAGTAGATCTGAAAGCCTaCCACCTCCAGGTTACCATGTGGATGCTGATAAGGGTTTCAGCTACTCCACAGCTGATGAAGCCTTTGTGTGTCAGAAGAAAAACCACTTCCAGGTGACAGTTCACATAGGGATGGTTGGAGATCCTAGATTTGTCAGAACGTCAAGAGGTCTCATACCCATAGAGTGCTTCCACCTGAATGTGTTTGGGGTCAAGCTTGAAGCACAGGACCATTTCATCACTATAGAGCAGTCGCAGTCAGACCGCAGCAAGAAGCCATTCTTACCAGTCAGAGTAAATCTGCCAGGAGACAAAATCACAAAGGTGACATTAGGAAGGTTACACTTCAGTGAAACCACagcaaataacatgagaaaaaaggGCAAGCCGAATCCTGACCAGAGGTACTTTAAGATGGTTGTTGGTCTGTATGCGACTGTGAAAGAGGAACGTTTTCTGCTGGTTGctaatgtttctgaaagaatcATTGTTAGGGCCTCCAACCCTGGTCAGTTTGAGAATGATAGTGACGTGCTCTGGCAAAAAGGACAGATCCCAGAGACCGTTGTGTGTCACGGGAGGGTTGGCATTAACACAGACAGCCCTGATGAGGCTTTGGTGGTTTGTGGGAATGCCAAGATAATGGGCAATGTCATGCATCCCTCAGACAGAAGGGCCAAACAAAACATTCAGGAAGTGGACTCAACGGAGCAGCTCAAGAGGATTGCTCAGATGAGAATAGTGGAATACGATTACAAACCAGAGTTTGCCTCAAGGATGGGAATTGATCAGTGTCATGAAACGGGAATCATAGCGCAGGAAGTCAAAGAACTCCTGCCTTCGGCCGTGAGGGAGATGGGTGACATCACGTGCATAAACGGGGAGACGATTGATCATTTTCTCATGGTGGACAAAGAGCAGATTTTTATGGAGAATGTAGGTGCTGTGAAGCAGCTGTGTAAACTCACAGATAACCTTGAGACACGTATTCAAGAGCTTGAGGTTTGGAACACTCGCTTGGCCAAGCTGAAGAGGTTGGGTAGCATGCAGTCCAATGGTGGAACTTCTGCTAAAGGGAAAATCCACAAAAACCACACACTCCATTCAAAACTTCCTCCGCCAACACCACCGCAGTCAAGCACAAACTACTTCTGTGGGAGATATCACAACTGTCTTCAACACAGAGTATTCCAAGCTAGTATTATCATGCTAGTAACAACCATGGCTCTTTGcgtCATCTCTATTACTGCACTTTATATGTTGACATTACAAGAAGACATGGACTTCAATAACAGTTTCAACAACAGCAATGTTATGCCAACTTACAGCACGACAGCATCGTCGACTACAGTGTTCTCCACGACCTCTCCTCGTCCCTGGCCTCCAGACATCGATGTCTccaatgtgttttattcagatGAAGTCTACTGCTGTccttcaaatttaatttataatcatAACGCTCAACTGACGGACACAACTGTCCCCTTCGATGCTCTTTCGCATGGAGTCATCAATTCAAGGAAAATGCAGAGAGAGAAGTGGTTAGAAAAACTTCCGGACAAAGTGAAAAATTCTACTGACTGGACAAACACAACTATACATTCCATCCTCGTTACGCAGAATCAACAAATTATAGATAAGCAGTACTGTCAGCAGGAGAATTGTGGGAAAGGAAACTACACCTACCTCATTCCCCTCAGTAAACACATCCCACCCAACATGCCCATAACCCTCCAAATGACCACAACTGAGTTGTTGGTGATTCACCTGTGCTCACATGACGAGAGTGAGCAGTGCTCCTCAGTACTTGACTACGATGGCTCAGAGTCAAACATTGCTCTCAACACACAGGGCTACATACATAAATGGACACTGCCAGTGGCAAATCACTACCACGCATCATACCATTTCCGCTCTTCTGTTGCTGGTTTGGCAGATTGTAACACTGATCTGAACTTTGCAGAAGTTTACTTTACTGACTACCACTTCCAGTTCTTCCGTCGCTGTGACTGATCAACCTTCAAAAAGCAATATCCAGTGATTTGACTGCACTAGTTAAATGCAGGCTGTAAATTATATACCGTAAAGAGTCTTTTTATGGGCAGATGTTTGTGTTgttgctggaaaaaaaactttggaaatatgtttgatattagtttattcttattttcatgttttgaaatCAGAAGGAAACATATGAACTCCAAAGAAAAGTAAAGCAGGTCTTCAAATAtgattttacatgtatatgtttcAACAATGAAGAGATGATTTTGTACTGAACTACATAATGAGATAATCTGATACTCATACTGAATTCATATCTCTACTGAACTGAATGCATTATGTAACCTGTGTGCAATGATGTTGACCAAATGAACATATGATTGTTTCAGAAGTCCAATTGTTTTAACAAGTTATTGaagttttttctaaatattgaACACTGCAAATAAAGGAagatttattctttaaaagtg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU42863 lncRNA upstream 340932 16057475 ~ 16057700 (+) True G28901
TU42858 lncRNA upstream 469794 15928131 ~ 15928838 (+) True G28896
TU42852 lncRNA upstream 557966 15840202 ~ 15840666 (+) True G28890
TU42851 lncRNA upstream 643504 15754813 ~ 15755128 (+) True G28889
TU42850 lncRNA upstream 660870 15737468 ~ 15737762 (+) True G28888
XR_006250610.1 lncRNA downstream 30291 16457477 ~ 16461526 (+) False LOC122342600
XR_006250608.1 lncRNA downstream 30293 16457479 ~ 16461526 (+) True LOC122342600
XR_006250609.1 lncRNA downstream 30513 16457699 ~ 16461526 (+) False LOC122342600
XR_006250607.1 lncRNA downstream 30513 16457699 ~ 16461526 (+) False LOC122342600
TU42948 lncRNA downstream 33417 16460603 ~ 16461475 (+) False LOC122342600
XM_043236536.1 mRNA upstream 133 16378633 ~ 16398499 (+) True LOC122342597
XM_043236539.1 mRNA upstream 133 16378634 ~ 16398499 (+) False LOC122342597
XM_043236535.1 mRNA upstream 133 16378635 ~ 16398499 (+) False LOC122342597
XM_043236538.1 mRNA upstream 133 16378635 ~ 16398499 (+) False LOC122342597
XM_043236537.1 mRNA upstream 133 16378636 ~ 16398499 (+) False LOC122342597
XM_043236529.1 mRNA downstream 9205 16436391 ~ 16457297 (+) True ptprb
XM_043236038.1 mRNA downstream 188159 16615345 ~ 16617218 (+) True LOC122342226
XM_043237522.1 mRNA downstream 273857 16701043 ~ 16710156 (+) True chrna2b
XM_043237523.1 mRNA downstream 273857 16701043 ~ 16710156 (+) False chrna2b
XM_043237784.1 mRNA downstream 394927 16822113 ~ 16838424 (+) True rhoj
TU42861 other upstream 412906 15985219 ~ 15985726 (+) True G28899
TU42853 other upstream 556777 15841372 ~ 15841855 (+) True G28891
TU42722 other upstream 743451 15650295 ~ 15655181 (+) True cdkn1d
TU42701 other upstream 842950 15439334 ~ 15555682 (+) True G28806
TU42601 other upstream 1184200 15207151 ~ 15214432 (+) True LOC122343376
TU42966 other downstream 46712 16473898 ~ 16474381 (+) True G28982
TU43729 other downstream 1873229 18300415 ~ 18301189 (+) True G29526
TU43756 other downstream 2009274 18436460 ~ 18461317 (+) True G29545
TU43926 other downstream 2455993 18883179 ~ 18886402 (+) True G29642
TU44195 other downstream 2863034 19290220 ~ 19342911 (+) True G29814

Expression Profile