RNA id: XM_043236539.1


Basic Information

Item Value
RNA id XM_043236539.1
length 2146
RNA type mRNA
GC content 0.50
exon number 13
gene id LOC122342597
representative False

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 16378633 ~ 16398499 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AGCGCGATCTGATTAATATTCACGAGCGAAACCGTCACAATAGTAGGAATCGTATTTTTCAACAGCACAATCATGAAGTGGGATGGTGGCAGCCGGTGGCTCTGTTGTGTCTTTGTCTGGCCATGGTTACTGTCGTTAGCCGAAGACTAGTCCGTTACGAGAAAAAACATGCGTCGTGAGAGGAGAAGCGCGAGCTGTGTGACCGTGCAAGCGTTAATGTATCACTGTTAATCGTATCCGTGCATTTTCTTGAAGGAGGAGCGGGATACATGACGGACGCACAATCCCTTCGGGACATGTGAAGACAAATCAGGAACCAGACGTGGTTTTATGAGGAGAAAAGTTTGTTCTGCGCTTCCTGTTGACTTGAGTTCTAAAGCTTTACACATCACTTCACCACAATGATCACTGTATGAAGATATCTGCGGCTATGGCCAGTGAACCACTCGAAGGGTTCCATGAGGTGAACCTGGCGTCACCCACCACCCCGGATCTTCATGGCGTTATAGACCCAAGCCCACCAAAGCACAATGCTCCCCCCAGCACACTGTACCGCACACACTCTTTGACCTCTAGCCAGAATGCGCCCAACGCTCTCAGAGCCGATCAGCTGCCCACCCAGCCCGTGTACTCGACCTCCTGTCACCTGGGCACGGAGGACACCCTCAATGGCAGTGGAAACGATGATGCAGTGGATGGCAACGTCCCGTCAACTGATGGAGAGGACGTTCTGGGCTTGAGCACGGACAGTCTGTCTCGTCTCAGGAGTCCGTCGGTTATGGAGGTCCGAGAAAAAGGCTACGAGAAGCTAAAGGAGGAGCTTGCCAAGGCACAACGGGAGCTTAAGTTAAAAGACGAGGAGTGTGAGAGGCTTTCTAAAGTGAGAGACCAGCTGGGGCAGGAGCTGGAGGAACTCACTGCTAGCCTTTTTGAGGAGGCTCATAAGATGGTGCATGAAGCAAACCTGAAGCAAGCCACTGCTGAAAAACAACTGAAGGAGGCACTGGGAAAAATTGATGTTCTGCAAGCCGAAGTAGCTGCTTTGAAGACTCTGGTCCTCTCGACGTCTCCCACATCCCCATGTAGAGAAATGCCCCCCGGACCCAAAGCCCCATTTAAGAAAGGCCACGCTCGCAACAAGAGCACGAGCAGCGCCATGTTAGGCAGCCAGCAGGAGGTCGCAGTGACGCAGCCCATTGTGGATTCACTGCTCTTCAACGAGTTCAAAATGTGGAAAGAGGAGCCAACCCTAGAAAGAAGCTGCTCCTTCCTCAAGCGCATTTACAGAGAAGATATCTACCCATGTCTGACATTTTCTAAGAGTGAGCTCGGGTCGGCCATCTTGGAGGCGGTGGAACAGAACACACTGAGCGTGGAGCCGGTAGGATTCCAGCCGCTGCCGGTGGTCAAAGCGTCTGCTGTTGAGTGTGGAGGACCCAACAGGATGGCACAGACCCTCGTGAAATGTGCCCTGTGCGGTCAAACCAAAACCTGCAAGCACAGAATCAAGTTTGGTGACTCCAGCAACTATTATTACGTATCTCCGTTTTGCCGTTATCGGATTACGTCTGTCTGCAACTTCTTCACCTACATTCGTTATATCCTCCAAGGACTAGTCAAGCAACAAGATGCAGAGCAGATGTTCTGGGAGGTCATGCAGCTACGGAAGGAGATGTCCAATGCCAAGCTGGGGTATTACAAAGACGAACTGTGAAGAGAGCCATTACCGTCATAGGGAACGCCATCGTCTTAACCCGGCCGCTCCTTGACAAGACGTTTACCAATCCTGTCTGAGCGGCTTCCCTGGGACCACCACACctcattatatttattgaaacCGAAGGAGAAGATGACACTAAAGCATGAACTGTAGCTGGAGGTTGCGTTCTCTCTGAAGAAGCTGTACATTGAAGGATGAATCACGCTCAAATAAACGCGTCTCGACCTCTCTTAGATTGATATGTTCAGTGCTGTAGCTAGCTGTGTGCTGTTGTGCTGTTGTGTTTCTATATCTGGAATGTTCTGTGCGTATCCTCTCAGACCACTATATGTATTTCCTCCCGAGTCTCATCTAGCCTCCCTCATTTTGATTTTAGTGCCTTTCTGGAAGCCTGAATAAAGTTGTGCACCTCCAGAGGAGAATTAA

Function

GO:

id name namespace
GO:0032402 melanosome transport biological_process
GO:0070121 Kupffer's vesicle development biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU42863 lncRNA upstream 320934 16057475 ~ 16057700 (+) True G28901
TU42858 lncRNA upstream 449796 15928131 ~ 15928838 (+) True G28896
TU42852 lncRNA upstream 537968 15840202 ~ 15840666 (+) True G28890
TU42851 lncRNA upstream 623506 15754813 ~ 15755128 (+) True G28889
TU42850 lncRNA upstream 640872 15737468 ~ 15737762 (+) True G28888
TU42882 lncRNA downstream 13518 16412017 ~ 16419965 (+) True G28911
TU42885 lncRNA downstream 13518 16412017 ~ 16419965 (+) False G28911
TU42887 lncRNA downstream 14027 16412526 ~ 16420148 (+) True G28912
XR_006250610.1 lncRNA downstream 58978 16457477 ~ 16461526 (+) False LOC122342600
XR_006250608.1 lncRNA downstream 58980 16457479 ~ 16461526 (+) True LOC122342600
XM_043236533.1 mRNA upstream 693 16374576 ~ 16377941 (+) True LOC122342595
XM_043236428.1 mRNA upstream 725374 15650350 ~ 15653260 (+) False cdkn1d
XM_043236427.1 mRNA upstream 725374 15650496 ~ 15653260 (+) False cdkn1d
XM_043236025.1 mRNA upstream 733760 15638512 ~ 15644874 (+) True LOC122342219
XM_043236561.1 mRNA upstream 776628 15595661 ~ 15602006 (+) True nup50
XM_043236532.1 mRNA downstream 133 16398632 ~ 16427186 (+) True LOC122342594
XM_043236530.1 mRNA downstream 2382 16400881 ~ 16427186 (+) False LOC122342594
XM_043236529.1 mRNA downstream 37892 16436391 ~ 16457297 (+) True ptprb
XM_043236038.1 mRNA downstream 216846 16615345 ~ 16617218 (+) True LOC122342226
XM_043237522.1 mRNA downstream 302544 16701043 ~ 16710156 (+) True chrna2b
TU42861 other upstream 392908 15985219 ~ 15985726 (+) True G28899
TU42853 other upstream 536779 15841372 ~ 15841855 (+) True G28891
TU42722 other upstream 723453 15650295 ~ 15655181 (+) True cdkn1d
TU42701 other upstream 822952 15439334 ~ 15555682 (+) True G28806
TU42601 other upstream 1164202 15207151 ~ 15214432 (+) True LOC122343376
TU42966 other downstream 75399 16473898 ~ 16474381 (+) True G28982
TU43729 other downstream 1901916 18300415 ~ 18301189 (+) True G29526
TU43756 other downstream 2037961 18436460 ~ 18461317 (+) True G29545
TU43926 other downstream 2484680 18883179 ~ 18886402 (+) True G29642
TU44195 other downstream 2891721 19290220 ~ 19342911 (+) True G29814

Expression Profile