RNA id: XM_043236546.1


Basic Information

Item Value
RNA id XM_043236546.1
length 4124
RNA type mRNA
GC content 0.45
exon number 16
gene id ttc41
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 4854065 ~ 4861148 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTTAATGTCAGCCTACTTAAAGCTTCAGGAGAAAGTGAACTATATTAGactatatttttgcatttattttaattttttctctgCTGAATGTAACTGCTCTTTAAATTTAGTCACACGTTGAAAATGCATGGAATAAATactcaagaaaaaaatacaggagTGACTCCTGACAGCTTATACCTGGGGTTTCCTTCCTTGCCTTACCTGTGCTATGTTCCTGGGGATCTTCAAGAAGAGCTGATTCACCTGAAAACTAAAGTCTTTCCACACTTAGACACACTTTGCCAGGCCAAAGGAACCCGCTTCACGCCAGTGGACTTGCAGCGAAGCAAACCAGAAAGCAGAGAGGATGAAAATAATCACAAGCCTGAGCTTTATGACCAGCAGCTGAAAATCAGTTTGGATCTCATTGACCGCTCGTCCTTTTTCATCTGTCTTCTTGGATACAGTTATGGACAGTGTCTGCCAGCAGAACATGGATCTCAGTCTGATGTGGGACCACGTTCTTTGTCTGAGGTGGCGAGAAACATGAATGTCGCTGCAGAGGCTGGTTACCCTTGGGTCACGGAGGACGAGTATCGCACCAGTAGCCTTACAGAGCTGGAGATCACCAAGGCAGCCTTCATTGACAACAACAGAAGCTGTTTCTTCTATTTTAAAGACTGCACCCCACAGGACACAGAGGACGACAGCAGTGATGAAACGCACAATTTCTTACACATGCTGTCCGCTCTAAGCCAAACTGAGAGACGCAGATCGAGAGATCTAAAACGAAGGATCATAAATCATTGTCTTCCTGTTCGATTCTTTAAAAACCTTAATGAACTTGAAGAGATGATAAAAGCTGACTGGGAAGGAGCCATTTGTGCATTTCATGAGAATCCAAAACATCAATTCTTAAGATGGCAGGATTCATTTGATCAACATTACCATGAGAGGCACGCTCGTGCATTGTGTGACTGGTTTGTTCCCTCGGCGCCCGCCACAGGAATACTGAACGCACTAAACAAATTTACAGATCCTGTAACCCATAATGCAAAATCTGAGAAGCACTCAAGAAATTCAGGAGCTCATTTCACACGtgaTCTTGAACAGAATGACAAGACAAAGAAGTCTATCTTTCTGGTATGTGGTGAAAGGGGTTGTGGGAAGTCTACTCTGGCGGCGTGGTGGCTGCGGTCTTTCTGCAGACAGAATCCTGATGTTCCAGTCATCTCTCACTTCTGTGGATCCAGCGCATCCAGCACTGACATCAGGTCTATGCTTAGACAGTGTACTGCTCAACTTCGGAGAGCGCATTATGGTGATTTTCCAGATTTGGATGAAGACGTGATTGAGTTTCTGCACCTGCATCGGGTGATTCAGGCATTTACTGCAGCACTCAGTCTTGGGCCTTGTATTCTTCTTGTGGATGGAATTGACCTTCTGACAGAAACACTCAGACTCTCAAAGCAAGAGGTAAAGACATTGCAGTGGCTGCCAGATGCTCTGCCTGCCTATTGTAAATTTATCATCACAACAACCTTCACCGACCTCACTTACAAAAGTCTGGCCAGCAGGACTGATGTCCAAATTCTCAGCTGTCCTCGTCTCTCCGATCCTAGTGTTCTGAGTAGCATTTTGTGCAAACATTTGTCTTTGCCTTACAAGGAGCCGCCAGCCAGTATTTTGCGAAGAGTTGCGCGTAAGAAGCAGTGCCACGTTCCGGCCTTTTTAGCTCTCATTGGCACCGAGTTACGGACATGTGGAgtgctgagagagaaagaggaagagatggaGCTGTTGAAGGAGTATATAGAGGCTGATTCAATTGCCGAGCTCTGGGTGAAGGTCATTCATCGTTGGGTACAAGATTACAGCCCAACTGCTCCAACAGAAGATATTGCTTCTTGTAAAGTCACTGAGGCTCAAACAAGCACTACACCACTCAGGGAGGATCTCTCAGGCTGGGTGTGGGACACGCTCTGTCTTATTCATGTGTCTCGTGCTGGCCTGACTGAGTCTCAGGTTTTGGCTTTGCTGGAAGATCTGGGCTACTGTGGTCATTTGAGAGTCCAGGTTTTGGAATGGGCCAGACTGCGCTCTGCTATTTGGCCTTGGGTTCAGGAGAAAACCAGTGGTCTTCTGACCATCACGCATCAATCACTCAGCCAGGCTATTAACCTGTTGTTGCACGGTACAAAGGGTCACATCTCTTACCATCTGATCCTGGCTAAGTTTTTTCAGAACTCCAGTTCAGAGCTCTGTAGCTGGGCAAGAAAAATGGAAGAGATTCCGTGGCATTTCAAGCAAACCAGTTCATTTAAGGAGTTGCACGACTTCCTCAGTGATCCAGCCACCATGGAGTTTTTGTCAAGCAGTCTAAAACAATACCCACAGATGACAACTGATGTTATATATTATTGGACACTACTAAGGGATGGAGGATTTGACCCTGTGACTTCATTCCAGAATCTGATGGCTCAGGCTTGGGAGCATTGTAATgATCACAGCAGTCTGTGGAGACTGTCTTTGTTCTGCTCCAAATTTATGCTTTGTTTGGATGAGATGCAACAAGCCGAGAAGCTGCTACTGCAAGCAGATCAAATGTTTCAAaagGATGTGGAGCTGGATAGTGACAGTATGAGGTTACTGCTAAAAGTGCAACATATGCTGGCAGAGCTTTACGTTCAAATGCATCTGCCAAAAGACACTGAGATGTATTGCCACAAGGGACTTTTGACAGCCCAGTCGTTTGCAGTAGGCAGCTCAGAGGTCAAACTGATAGTTGGACAGATGCTTTGTCGTCTGTGTGTGGCGTTGCTGGAGGATAGACGCATGCATGAAGTGCCAGGGATTTTCAGAGAGATCGGTTCTGCTAGATACATCTCTGGCCATCCTTGTGCTGAAGGCACAGCTATGCTGCTGAAGGCCATTCACAAGTTGAGTCTTTGTGAGCCCAAGACTGCTGAGAAATGCTTCGAAGCTGCTTTGTCCAGCAGGAGGCGCTGGTACGGCCACGATCATCCTCTGGTAGCAGAAGTGGAGGAGCAGCTTGCAGATCTCTGGGCCAGAGCTCAAACCAGCACAGAGTGGACACAGAGGAAGATGATTGAATTGTACCGGCATGTTCTGAGCACTAAAGAGACCGAAGCTCAGATGTTGCAACTTCCCACAATGCAACACAACCTTGCTGTCATTCTTATGAAGCTTGGCAAAGTGTTGTTGCAAAGCTGCAGTAGAGTGGACAGGAGAGAAGGGCTGGATCTGCTCCAGAGAGCTGAAGACATAAGGATTCATCTCCTGGGCCCTGAGCAGCCAGTGACCCGAGACCTGGAGCTTGTTTCAAACCCTGATATTGCAGGACAGAAGAAGCATGTTCTAGAGGTCATCGGGTCCAACTCAAACAATAAACTGTCACTAGCAAGGTCTGAAACTGCTTTCAAGGAATCACACGGTGGGCTGCTGCAACAATCATCCTCTAGGTCATGTATAACACGACCAACTAGCACACTCCCTAGAAGCTTCTCTAGCCAAACAGCATCACGCCGCGATGAAACCCTAGAAAGACGATGGATGGCTTTCCGGGTCTCTGTTTCTCGGCCACACAGTGATATTAGGACTCTAATGCAAACAGGAAACACTGGTTGGTTTGACCGACAACGGCCCCTGTCGAGATCAACCAGGGGTCCTTCCCAGGGAGATGCATCATGCAGGAGGAAGCTCTGAAACCACTCAACCAATAGATaaggaaatataatttttcacatAATCAGAGTAGTCATGCTCATTGTATTCCATTCTAGTACATTTTACCTTAGTGTTGCTTGCTAACATTTCTATAAAAACTTATATAAAGCTGCTTTTGAAACATAGAATGTGAAGCACTacataaaaatgacaactaTTAGAATAGAcgcattttctgttttctagtGAACATTTTAGCAATTTATCCTTTGTTTGCATAAATTATCTGCATTATTACAACGTGCCtacttaaagcaatagttcacccaaaaatgaaaacgatcTCATAACTCATAACtcaccccaagccatcctacatgtatatgactttcttcttttggaagaaaaaaagtcagaggttttaaaaaattgatcctggctcttccaaacTTGGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU38607 lncRNA upstream 86244 4765864 ~ 4767821 (+) True G26008
TU38569 lncRNA upstream 110462 4730837 ~ 4743603 (+) True G25976
TU38575 lncRNA upstream 163282 4689375 ~ 4690783 (+) True G25981
TU38522 lncRNA upstream 418428 4432605 ~ 4435637 (+) True G25941
TU38521 lncRNA upstream 422107 4431623 ~ 4431958 (+) True G25940
TU38673 lncRNA downstream 120061 4981209 ~ 4994260 (+) False G26043
TU38674 lncRNA downstream 120061 4981209 ~ 4991489 (+) True G26043
XR_006250776.1 lncRNA downstream 122073 4983221 ~ 4985211 (+) True LOC122343429
XR_006250590.1 lncRNA downstream 125031 4986179 ~ 4988188 (+) True LOC122342533
XR_006250591.1 lncRNA downstream 128019 4989167 ~ 4991312 (+) True LOC122342534
XM_043236549.1 mRNA upstream 6321 4841693 ~ 4847744 (+) True glt8d2
XM_043236550.1 mRNA upstream 6321 4843284 ~ 4847744 (+) False glt8d2
XM_043236167.1 mRNA upstream 13460 4832410 ~ 4840605 (+) False fbxo18
XM_043236168.1 mRNA upstream 13460 4833433 ~ 4840605 (+) True fbxo18
XM_043237028.1 mRNA upstream 26413 4817048 ~ 4827652 (+) True adm2a
XM_043236548.1 mRNA downstream 180 4861328 ~ 4867182 (+) True parp12b
XM_043237910.1 mRNA downstream 6874 4868022 ~ 4888613 (+) True si:dkeyp-27e10.3
XM_043237911.1 mRNA downstream 6874 4868022 ~ 4888613 (+) False si:dkeyp-27e10.3
XM_043237677.1 mRNA downstream 28275 4889423 ~ 4894735 (+) True LOC122343294
XM_043237678.1 mRNA downstream 28275 4889423 ~ 4894735 (+) False LOC122343294
TU38543 other upstream 225166 4550163 ~ 4628899 (+) False G25958
TU38544 other upstream 225166 4550163 ~ 4628899 (+) True G25958
TU38370 other upstream 618821 4232908 ~ 4235244 (+) True G25838
TU38369 other upstream 622973 4229629 ~ 4231092 (+) True G25837
TU37969 other upstream 1115471 3737502 ~ 3738594 (+) True G25551
TU38659 other downstream 68323 4929471 ~ 4942735 (+) False LOC122343397
TU38663 other downstream 74781 4935929 ~ 4942735 (+) False LOC122343397
XR_006250627.1 other downstream 493184 5354332 ~ 5391626 (+) False pcloa
unassigned_transcript_304 other downstream 537732 5398880 ~ 5398967 (+) True trnay-gua_2
TU39144 other downstream 920796 5781944 ~ 5853381 (+) False LOC122342465

Expression Profile