RNA id: XM_043236555.1


Basic Information

Item Value
RNA id XM_043236555.1
length 4935
RNA type mRNA
GC content 0.51
exon number 19
gene id ppp1r13bb
representative False

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 17040857 ~ 17083120 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ACTTGAGTAGCATGCATTTGTTGGAAGGACACCTTGCTTTGAGATAAGTTCCCACTCAAAATTCCTGTTCGCATTTTTCATGTGGTGTTTTATAagaattctgtttttgttttcgcattttatgcaatttttagtTGATTTGTAGTTCATGTCATTGATCAGTAGTGGGTGTTGAAGGACTGTCTAGCACATCACCCTCACAAACGTGAAGTCCTTTTAACTGTTtctcaaatacattttgaaatgacacggtgtttatttattactggAAACTACTCAATGAAAGCGTCTGCAATATAAGAGAGTAACGTTATTCTCCATGCTGCCATGTTGAACGCCTTCAGAGGGCTGTGATCTCGGGTCGGACCTTGTGGATGTTGTAAAAGGCACAGTGAAGCTGAAGACCAGATGTTCCTCTGACACAAGCAAAAATGATGCCTATGATTTTAACGGTGTATTTGAGTGATGGGGAGCAGGCGCTGACGGAGGTGCCCATCACTCCAGAGACGACATGTCGCGATGTGGTGGAGTTCTGTAAGGAGCCGGGAGAAAGCGGCTGCCACCTGGCCGAGGTTTGGCGTGGAAACGAGAGAGCCATACCCTTTGACCACATGATGTACGAGCACCTGCAGAAATGGGGGCCCAGAAAGCAAGAGGTGAAGTTCTACCTACGCCATGAAGACTCGCCCACTGAAAGCAGCGATCAGGgGAGCCAGCAGTCTCAGGAGCAGCCCAGCAGGAGAGGAGGAAGCAGCTCAGACATGCACAACGAGAACGGGgtgGGAAACCCTCGCGTGGAGCTCACTCTCTCAGAGCTGCAGGAGATGGCCACTCGTCAGCAGCAGCAAATTGAGGCCCAGCAACAGATGCTTGTCGCTAAGGAGCAGCGGTTGCGCTATTTGAAGCAGCAGGAGCGACGGCAGCAGCAGGCTGTGTCTGAGACCGAGAAACTGCAGAGGTTAAAGGAGAGGGTGGAGAGTCAGGAAGCCAAGCTCAAGAAGATCCGTGCCATGAGGGGCCAAGTGGACTACAGCAAAGTCATCAATGGCAACCTGTCCGCAGAGATCGAGCACATCAGCGGGCTGTTCCAGGAGAAGCAGGAAGAGCTGCAGGCAGCCGTCTTGAGGGTGGATCAGCTTAGCCAGCAGCTGGAGGACCTTAGGAGAGGCAAACTAAACGGCCTGCAGACCCTCGGGGGTCAGGTCACTGGCACCGCTGCCCTGGAGCTCCGCAAACTCTACCAGGAGCTGCAGATACGCAATAAGCTGAATCAGGAGCAGAACAGTAAACTTCAGCAGCAGAAAGAGCTGTTGAATAAGAGAAACATGGAGGTGACACTGATGGACAAGCGCATCAATGAGCTCAGAGATCGACTATACAAAAGAAAAGCTGAGGCACGTCAAAAAGAAAACCTTCCACTGAACAGAGTAAACGGTCCTCCCTCTCCACAGCCAGCTCCCGGAAACACCGGACGTGTGGCTGCTGTGGGACCCTACATCCAGGTCCCGGTGCCAGGCAGGCAGGAGGGATATGTAGTGCCCCCTGAACCTCTCAAACCTCAGTCACTGGGTGTTAACACCCCAGCCAACCACGCCCGCTCCAAATCAGATGGAGTGAGAAAGCCTCCCGGCCCCTGGAAGGTCACTGATTTAGACATCATAGTGGACCCGATTGCTCCACCCCCTCCAGAGCCCCGCCCAGGCCCTGGGGCTCCACCCCCAGTCACCGGCTCTGCGGCAGGGTCGGACGGCGCTTCTCCAAATGATGCCGGTTGGCCCACCCTCAACAAGAGCAGCACATCAGTCAAACCACCTGACTGGAAGGAGTCTGGAACAGACATGACCAGTAAAACAGCATCACCTGCAGGCACTCCTGGAGATAAGGATTCCAATAAAATGAGCTCAGCTCCACCTCTCAGTAAGCCCCAGCCGCCTCCATACGGAGCCCATACCAGCAACCACCCTCTCTCGTCTGCCAACTCGGGTTCCACCAGCTCTTTGGACAGACGCAAGGATGTTCCCCTCAGACCGGTGCCCAGCCTTCCCACCAACCCCCCGGCGCAGCCGGCCTGGCCCCGTGTTCCCCCGGCACCCACAGGCTCTTCCTCTCAACAGATCCAGCAGCGCATTTCTGTGCCCCCCAGTCCCACCTTCCAGCCCAGTCCACCCTTCTTCCCCTCCAGTGAGAGGTCAGACCCTCCTCTAGCTGTAGCGGTACGCCCGTTTATCCCAGATAAGGGCTCCAGACCGCAGTCACCCAGAAAAGGCCCAGCCACTATGAACTCAAGCTCTATCTACCATATGTACCTACAACAAGCAGCTCCCAAGAACTATCCTCTGAACGTCAAGCCCGCAGTCAAAGCAGTATATGGTAAGCCAGTCTTGCCTCCCAGCTCTACACCCCCCTCTCCCTTACCTTTCGGGGGCTCTGGGGCCTTTCCCGCCCTGCAAGGTCCAGGAGGAGACATGTTAGATATTGAGCTGGACCTTGATGGTCAAATTATGTGTGTGCCTGAGCCACCCCCACCCAGCGTGGACCACATCCCGCGACCTCTCAGCCCCACTAAACTCACACCCATGGTGCACTCGCCTATGCGCTACCAGAGCGATGCTGAGCTGGAGGTCTTGCGCAAGAAACTGGCCAATGCTCCACGACCGCTTAAGAAGCGCAGCTCGATCACAGAACCAGAGGGTCCCAATGGGCCTAACATCCAGAAACTTCTCTATCAACGATTCAACACCCTGGCCGGAGGGATGGAAGGAGGAATTAGCGGTGTGAGTGGAGGCGGAGGAGTGACCCCATTCTACCAGCCCTCCGTGGCCACAGGTGAAATGCTCTTTGATGCAGACAATGGGAATCCACCTTCAGAAACACCCACCGTGCCCTCGGAGGGCGCTGTTGCTGAGGATGTAGTCCTACAAGGTGACGCCAACGATAATGAGCCCCCAGAGCAAGAGGCTGAGACGCTGACCCCTCCAACACCCGAACCATCAGAAGACGATAACAATAACCCTGCAGAAACATTAGCAATTTTACCGAGTCCTGTAGCTGAGGCCAGCACACCTGAAGAAGCAGAAACCTGTCCCTTGTCCCAGCCCACGGGCAAACGCACGAACCTAAAGAAACCCGACTCGGAGCGGACAGGTCATGGCCTTAGAGTGAAGTTCAACCCACTCGCTCTGCTGCTGGATGCCTCACTGGAGGGCGAGTTTGACCTTGTACAGAGGATAATCTATGAGGTTGACAATCCCAGCACCGCTAATGATGAGGGGATCACACCCCTTCATAACGCAGTGTGTGCCGGACACCACCACATCGTCAAGTTCCTGCTGGATTTTGGTGTTAATGTGAATGCAGCTGACAGTGACGGCTGgacGCCTTTGCATTGTGCCGCCTCCTGTAACAGCGTGCACCTGTGTAAGATACTGGTGGAGTCTGGGGCTGCCATCTTTGCTACCACTATCAGTGATGTGGAGACTGCAGCAGACAAATGTGAGGAGATGGAAGAGGGATACATACAGTGCTCACAGTTTCTCTATGgtgTGCAGGAGAAGTTGGGCGTGATGAATAAGGGAGTTGTGTACGCGCTGTGGGAGTACGAGGCTCAGAGCGCAGATGAGCTGTCCTTTCAGGAGGGTGACGCCATTACTGTCCTACGCAGGAAGGACGATGCCGAGACCGAGTGGTGGTGGAGTAAACTCAACGACAAAGAGGGCTATGTGCCACGGAACCTATTAGGGCTTTACCCCAGAATAAAACCACGTCAAAGGTCTCTGGCGTAACTCTCATTGGTGACCGAACGGACTGATGTCTCAAGGTGTTGAACCTCTGTCTTTGACCTCTATGTGCGACTCGGACCACAGAAGGGGTGAAGCTGCTAAACCCTGAACCTGGAGGCACTATTAACCGCACTACTCCAACACCCTCTCCAGCGAACACCAGGCCAAACAAGCAGCCTCAGGTTTCTCGGTCTGCCCCCATCAGCTCAGCCACCAGGCCTCCGTATCTACCACTCCACTCCTCACACGCTCTCCTGTAtccatgtaaaatgtattatagctGTACATCACACCTTGGGGATCAAGCACTAATCTCTTTGACGAGagcttttctttatttgtagTTGCCTTGCTGAGAAGACCAGGGCAGGCAGTGCTCTTTGTCAGAGAGAGATTCTGTAAACTTGGAATTGAACTGGATGAATGAGAGCTCAGGTTGGAAACAAAGGACTTGTGTGTGAATTTTATAGCTCCTCTACAAAAACGAGTGTATAAACTGGAAGTATATGAGAGCAGAGAACAAAATATACTTAGTTTGCGATTATTCTGATTCTGTGACTGAAGAATCCCATGTACTCATGGCCATGTATATGTGGGATTTATGTATgagtgtgttatttttttttccactgcagTGAGCATTATAAAGAAGTGTGAAGTGCTGAGAAGAGTttttgaagagtgtgtgtgaagtgttAGAAAGATTGGGATGAACAACCAGAACCATCATTATAAAATCAGTAAGTATTTAGCAAACAGGagctttttttgtcagtttatggCTGCAGACGGTTTGGCCAGAGTGCCACAGCTCCAATGAATTAAAGCTGAACATTTTCTCTGCTTTtacattcttattattttatttttttggtttagttttttttttaatgtttctttatattatACCAACCCATTCCACTCCACTCCAGTTTTTAGTCATgtgaaatgatttttatattctGCCGTTAAGGCAGTTGAAGAGCTTTATTGTGGAGTTTAACCTTGTAAATACTGTGATGAGGACAGGACAGGAGACATGCTTGACTCGATGCTGTTAGACTAAACTGCCCGTGTGGGCTTCTGTGAATACAGTGACTCACACCTTGTGTTCTATACATGTgcacaataaaaagaaatgagtcGTAGCAAGAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU43100 lncRNA upstream 27 17038454 ~ 17040830 (+) True atp5mj
TU43101 lncRNA upstream 85 17038454 ~ 17040772 (+) False atp5mj
TU43099 lncRNA upstream 2637 17037273 ~ 17038220 (+) True G29086
TU43090 lncRNA upstream 99547 16941016 ~ 16941310 (+) True G29078
XR_006250658.1 lncRNA upstream 129515 16897515 ~ 16911342 (+) True LOC122342883
XR_006250625.1 lncRNA downstream 7419 17090539 ~ 17119106 (+) True LOC122342667
XR_006250626.1 lncRNA downstream 10843 17093963 ~ 17119106 (+) False LOC122342667
TU43230 lncRNA downstream 136022 17219142 ~ 17219514 (+) True G29178
TU43233 lncRNA downstream 137137 17220257 ~ 17220616 (+) True G29181
TU43244 lncRNA downstream 211255 17294375 ~ 17294640 (+) True G29192
XM_043236560.1 mRNA upstream 143 17038419 ~ 17040714 (+) False atp5mj
XM_043237706.1 mRNA upstream 3700 17033921 ~ 17037157 (+) True rd3l
XM_043237785.1 mRNA upstream 14519 16999905 ~ 17026338 (+) True rtn1b
XM_043237786.1 mRNA upstream 14519 17016609 ~ 17026338 (+) False rtn1b
XM_043236321.1 mRNA upstream 101170 16937799 ~ 16939687 (+) True six1b
XM_043236670.1 mRNA downstream 39313 17122433 ~ 17176497 (+) True brf1b
XM_043237833.1 mRNA downstream 183337 17266457 ~ 17293636 (+) True nudt14
XM_043237097.1 mRNA downstream 225173 17308293 ~ 17348870 (+) False jag2b
XM_043237095.1 mRNA downstream 225174 17308294 ~ 17348870 (+) True jag2b
XM_043237096.1 mRNA downstream 225174 17308294 ~ 17348870 (+) False jag2b
TU42966 other upstream 566476 16473898 ~ 16474381 (+) True G28982
TU42861 other upstream 1055131 15985219 ~ 15985726 (+) True G28899
TU42853 other upstream 1199002 15841372 ~ 15841855 (+) True G28891
TU42722 other upstream 1385676 15650295 ~ 15655181 (+) True cdkn1d
TU42701 other upstream 1485175 15439334 ~ 15555682 (+) True G28806
TU43729 other downstream 1217295 18300415 ~ 18301189 (+) True G29526
TU43756 other downstream 1353340 18436460 ~ 18461317 (+) True G29545
TU43926 other downstream 1800059 18883179 ~ 18886402 (+) True G29642
TU44195 other downstream 2207100 19290220 ~ 19342911 (+) True G29814
TU44225 other downstream 2648142 19731262 ~ 19786128 (+) False G29835

Expression Profile