RNA id: XM_043236564.1


Basic Information

Item Value
RNA id XM_043236564.1
length 2743
RNA type mRNA
GC content 0.41
exon number 7
gene id gxylt1b
representative False

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 6934093 ~ 6940296 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AAGCCCTACGGGCtttcataaaatatgcataagaATAATTTTAGCCTACATGTATGGCTGTTGCTTTTGATATGTATTGCTCTAAACATATTAGTGAATGTTTTAAAGATATTACTAATTTAGTTATTAGCCATTATTACACGAGGCAAGCTTTCGTTATACCAGTAGATACGGTACtaagaattcattttaattttaccgTCTTGgcaaaggctgtttttttttaatttttacaagaATTGCAAGATTAAAATTAGATGCAGTAACAATTGCCATTTATTATGAATCCTTTTAATTCAATGTCACATTGTTCTgttaaacacaacaaaaaatattagcatttcattattaataaaaaaaaaatagaagtctgcataataactaataactttAAGCTGCTATTACGTTAAAGGAAAAACGTAGTGGGGGGATGGGTGGTGGTCGTTAGTTTAGGAGAATTGACTCATTTTGCGAATCGGTTCCTGCGAACAGATCGTTTCAAACAACCGATTCAGTGGCTCTTTAGGCAATTACGTCATTTTGTAGTCTCTGACAGCCTGGCATAGTATTTCTTCTACTCCAATaaacattaggatattaagtaaagatcatatcCCACGAAGATGTttagtacatttcctaccataaatgtatcaaaaactTGGGCAAACCATAACAAtgaaatatattctatatatctctatatattgCATGTACCCAATTTCAGTTTGTAGCAGCTAATAACTGTTAagcaaaaatgctaatatatatatatatatatatataaagcttttGCTAAAACTCAAATttctaaacacatttaaagaacaCCCTAGTTGCGACTTCTGCCGTCCCTGTCTCGCGAATCAGTTCAATTGATTCTCGTAAAAGATCCGAATCAAAAGAACAATTCGTTCGCGGACCGGACATCGCTAGTGGTCATTAGTGGGCGAGTACACGCACCAGTGTACTCTTTTCGAGTAAAGCAGTTCCCGTGTTTTGTAGAATGCGTATATATCTTCGTACTTTTAGTTTGTGCATAGTTATCGCTCTTTTGTCTTTAgtgtttttgttcagtaaacACGACGCTAAAGGTTTTTCGGCCGTTTTAAAGCAAGATAGGGCGCCGATGGAGCCGTCCGTCCCGAAGAACTTAAACGGGgtgaaatcaaaacaacaagCCGCCGGGACCACATCACACAGACCGCGAGATGTTGCTCACAAGGTGTCTGCAGCGGGACAGAGAGAGACGGTTGAGCTGGCTGCGGTGGCTTGTGGAGAGAGACACGAAGAAGCCGTCAACATGCTCAAGAGCGCAGCCATGCTCAGCAGCCGAGCTTTGAGATTTCACATCTTTGCAGAGGAGCAGTTACACGCCAGCATAAAAACAACACTGGATTCCTGGCCAGCTTTCATCCAGGCGAAGTTCAGCTATGTGGTTCACCCCATTTCATTCCCCCATGAGAACCACGAAGAGTGGAGTCAGCTTTTCAAGCCCTGTGCATCACAGAGACTCTTCTTACCGATGATTCTGAAGGAGGTGGACTCCTTACTGTACATGGACACCGATGTCCTCTTTCTGCAGCCTGTAGAGCTGATCTGGGACATGCTGACACGTTTTAATTCCACACAGTTAGTAGCCATGGCACCAGAGCACGAGGAGCCACGCATTGCCTGGTATAGTCGCTTCTCCCGGCATCCGTATTATGGAAAAACCGGCATCAACTCGGGCGTCATGCTGATGAATTTGACCCGGATGCGAATGACGCAATTCAGAAACGACATGACCTCCGTAGGTCTGCACTGGGACGAGCTTCTGATGCCTCTGTTACAGAAATACAAGCTTAACATAACCTGGGGCGATCAAGATCTGATCAACATCATCTTCCATTATAATCCAGAGATGGTACTTCCCTTCCCCTGTCACTGGAACTACCGTCCCGACCACTGCATCTACGGCAGCAACTGCATCCCGGCAGAGGAAGAGGGGGTTTTCATGCTGCACGGCAACCGAGGGGTGTTTCACAGCGACAAACAGCCAGCCTTCAAGGCTGTGTATGACGCTTTCAAACATTACATATTTGGAGAGGATCTCATGAACTCCTTCTTGTTACCCCTGGAGGAGGCGCTGAACGGAACCACTCACACATACTGTGGGAAAGCCAGTCATTTCTTTACCAGAGGACTTGGAAGGTCTGCGAGGAAGATTCGGAGAACGCTTCCAGCCGGTGGCTGAGTTGTAGTGCTGCTgctgaataatgacagaaatgtatttcTCCGAGACAGGAGAGAGGCGACGCTGCTCTTCCAGTCGAGTCTGTGCAATATTAGCAGGGCGGCCTGAATGATGAAACGGGaatttaaactgatttttctctttaaaatcgCAGTTAAAGGGACggtgaaaaacaaataaaagtgattatgcaaatgtaattccaaacctcataaaacaagtttttttaagTTAGCCTGACTTCTTGTCCGTTGATTTGGTTCAAAAGAAGTTGAAATAAGCCTGGCTTTATGAAACAGGCCCCAGAACGACTTAATTTCCAGACAAAATATAAGGTAAAGTCTTGTGACTGCTATTATGTTTCTTTTCTAGTGCTTTTGGATGCATTGTTTCTTTAAAACGGATATTGAATGTATTGAGAGAGGTTATAGCGTAAACtacttgaaaatgtaaatattgtattctttttacataatgtttgtatgaaataaaaatatatatgactaA

Function

GO:

id name namespace
GO:0016266 O-glycan processing biological_process
GO:0016021 integral component of membrane cellular_component
GO:0035252 UDP-xylosyltransferase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU39728 lncRNA downstream 25598 6845559 ~ 6908495 (-) True G26790
TU39736 lncRNA downstream 70711 6862723 ~ 6863382 (-) True G26796
TU39733 lncRNA downstream 71846 6860074 ~ 6862247 (-) True G26795
TU39723 lncRNA downstream 90244 6841974 ~ 6843849 (-) True G26787
XR_006250660.1 lncRNA downstream 544892 6377116 ~ 6389201 (-) True LOC122342911
XR_006250751.1 lncRNA upstream 226510 7166806 ~ 7189549 (-) True LOC122343305
TU39779 lncRNA upstream 274038 7214334 ~ 7220911 (-) True si:dkey-261e22.4
TU39780 lncRNA upstream 379206 7319502 ~ 7319725 (-) True G26832
TU39813 lncRNA upstream 432877 7373173 ~ 7373595 (-) True G26846
XR_006250789.1 lncRNA upstream 459370 7399666 ~ 7456641 (-) True LOC122343472
XM_043237094.1 mRNA downstream 140658 6792367 ~ 6793435 (-) True akap14
XM_043236394.1 mRNA downstream 150058 6776299 ~ 6784035 (-) True irf5
XM_043237696.1 mRNA downstream 175905 6756012 ~ 6758188 (-) True opn1sw1
XM_043237514.1 mRNA downstream 183843 6740893 ~ 6750250 (-) False mdm1
XM_043236566.1 mRNA upstream 150 6940446 ~ 6950897 (-) True yaf2
XM_043236513.1 mRNA upstream 11596 6951892 ~ 6954640 (-) True zcrb1
XM_043236510.1 mRNA upstream 30251 6970547 ~ 6992898 (-) True prickle1b
XM_043236509.1 mRNA upstream 30251 6970547 ~ 6980079 (-) False prickle1b
XM_043237882.1 mRNA upstream 145018 7085314 ~ 7091042 (-) False pus7l
TU39663 other downstream 194498 6737641 ~ 6739595 (-) False il22
TU39610 other downstream 572650 6350503 ~ 6361443 (-) True msrb3
TU39270 other downstream 994094 5938055 ~ 5939999 (-) True mrps33
TU39262 other downstream 1020555 5909473 ~ 5913538 (-) True G26462
TU39180 other downstream 1080727 5850404 ~ 5853366 (-) True G26414
TU39958 other upstream 614819 7555115 ~ 7558453 (-) True G26951
TU40263 other upstream 1307615 8247911 ~ 8249225 (-) False LOC122343432
TU40311 other upstream 1520210 8460506 ~ 8468028 (-) True G27232
XR_006250786.1 other upstream 1953888 8894184 ~ 8941271 (-) False LOC122343470
XR_006250788.1 other upstream 1955496 8895792 ~ 8941271 (-) False LOC122343470

Expression Profile