RNA id: XM_043236578.1


Basic Information

Item Value
RNA id XM_043236578.1
length 1728
RNA type mRNA
GC content 0.41
exon number 9
gene id alg12
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 15143788 ~ 15148210 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCATGCGCTGGGACAGTACTACTGGTACAGCGCGCTATTATGGCTCAAAAGGAAGCTGTAAACGAGCgtcctcttttatttttaataatttgtattgtatttatacatttgtttatctGTCCTTACACCAAAGTTGAGGAAAGTTTTAACTTACAAGCAATTCATGATGTTCTGTATCAcagatttgattttgaaaagTATGACCATCATGAGTTTCCTGGTGTGGTTCCACGTACCTTTCTTGGACCCCTGTTCATATCCGCACTCAGTGCACCAGTGATTTGTGTGCTTGCCCTCTTTCAAATACCAAAGTTTTACACTCAGATCCTTGTGAGAGGAGTTCTTGGACTCTGTGTGATTCTGTCACTATGGCATATGCAAAGAGAGGTCCGCAGGCGGTTTGGGTCAATGGTGGCCAGTCTGTTTTGCTTTATCTGCATCACACAgtttcatctgatgttttaCAGTACCAGAACCCTCCCAAATGTGTTTGCTTTGCCTTTAGTTTTGCTGGCATTCACATCTTGGTTGGGCCAGAGACACGGTGCCTTCATTTGGCTTTCCGCTTTGGCTATTATTGTGTTTCGCTCTGAATTGTGTCTCTTCTTTGGCTTGATGTTGTTGATGTCACTCCTGAGCAGGAAACTTCATTTTCTACAGTTGATTTACCATGCCGTACCTGCTGGTGTTTTATCTTTGGGTCTCACTGTCATGGTTGACACAGTTTTCTGGAATAAGCTGCTCTGGCCTGAGGGTCAGGTACTATGGTACAACACTGTGTTGAATAAAAGTGCCAACTGGGGAACTTCCCCATTTCTGTGGTACTTCTACTCTGCTCTCCCTCGAGGTCTTGGCAGCACAATACTATTTATTCCACTTGGCCTGATGGATAGACGAACAAGAAAACTGCTCATTGTAACTATAGGCTTCATTCTGCTATACTCCTTTCTGCCCCACAAGGAGCTCCGTTTCATCATCTACACCTTTCCTGTGCTCAATATGATTGCTGCCTGCGGCTGTTCCTTTATTTTGAAGAATTACCACAAGTCATGGATGTATAAAATTGGCTCCATAGCTATGGTAGGACATTTGATGCTCAATGGAATATACACAAGTATTTCTCTTTACGTTTCCCATCACAACTACCCAGGAGGCAAAGCAATGCAGGAGATACATAGAATAATTCCAGCAACAGCAGATGTGTCATTGCACATTGATGTACTTGCTGCACAGACGGGAGTCTCACGTTTTCTGGAGCTAAATAGTAAATGGAGATATGACAAGAAGGAGAATTTGACTTTTGAAGATGCAGTCATGAAAACGTATTCACACCTGTTAATGGAAGCAAATGCAACTAAGATATCGCTGCTCAAAGACTCTCACAAACCTTTGGTCGTTTTCTCAGGATACCAAAATCTTGTGTTTGAGATGTCCCAATTTCCACCTATCAAAATCAAGCTAAACAATAAGCTTGTGCTGCTAGCAAGACACTCAAATAATGAACACAGATAGTAAACTGaaattgttataataaaaatatttcatatgcaaagacggatacaaataaatgtttacgtAGTGGTTCTCTGAATAATTTTAATGGTCTGTTTTACTGGGAGGGTAGATGTCCTTAGTTAAGGTGTTTCAGTAGCTTGGTCATTTGCTCACTGCTTCCTTTTGTAATCAATTGAAACATGTTATTGCTATTAAATGTGCTATGGAAGGTCA

Function

GO:

id name namespace
GO:0006488 dolichol-linked oligosaccharide biosynthetic process biological_process
GO:0097502 mannosylation biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0000009 alpha-1,6-mannosyltransferase activity molecular_function

KEGG:

id description
K03847 ALG12; alpha-1,6-mannosyltransferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006250554.1 lncRNA downstream 119925 15017785 ~ 15023863 (-) True LOC122342397
TU42586 lncRNA downstream 140359 15003149 ~ 15003429 (-) True G28738
TU42554 lncRNA downstream 317950 14811440 ~ 14825838 (-) True LOC122342647
XR_006250623.1 lncRNA downstream 317951 14823773 ~ 14825837 (-) False LOC122342647
XR_006250560.1 lncRNA downstream 1073383 14068087 ~ 14070405 (-) True LOC122342415
TU42674 lncRNA upstream 61474 15209684 ~ 15213451 (-) True G28789
TU42788 lncRNA upstream 268646 15416856 ~ 15418238 (-) True G28850
XR_006250641.1 lncRNA upstream 295554 15443764 ~ 15445229 (-) True LOC122342747
TU42824 lncRNA upstream 417209 15565419 ~ 15655181 (-) True G28870
TU42849 lncRNA upstream 585153 15733363 ~ 15733883 (-) True G28887
XM_043237810.1 mRNA downstream 7249 15124045 ~ 15136539 (-) False brd1a
XM_043237809.1 mRNA downstream 7249 15124045 ~ 15136539 (-) False brd1a
XM_043237808.1 mRNA downstream 7251 15124045 ~ 15136537 (-) False brd1a
XM_043237807.1 mRNA downstream 7252 15124045 ~ 15136536 (-) True brd1a
XM_043237012.1 mRNA downstream 116125 15025384 ~ 15027663 (-) False LOC122342864
XM_043236319.1 mRNA upstream 407041 15555251 ~ 15588908 (-) True LOC122342488
XM_043236562.1 mRNA upstream 453230 15601440 ~ 15611575 (-) True kiaa0930
XM_043237519.1 mRNA upstream 464908 15613118 ~ 15632452 (-) True large1
XM_043236027.1 mRNA upstream 495979 15644189 ~ 15647843 (-) True sapcd1
XM_043236026.1 mRNA upstream 495979 15644189 ~ 15647729 (-) False sapcd1
TU42583 other downstream 116170 15024587 ~ 15027618 (-) True LOC122342864
TU42581 other downstream 116170 15026110 ~ 15027618 (-) False LOC122342864
TU42549 other downstream 333651 14808597 ~ 14810137 (-) False LOC122342642
TU42539 other downstream 446602 14695860 ~ 14697186 (-) False LOC122342862
TU42429 other downstream 967063 14169422 ~ 14176725 (-) False cerk
XR_006250613.1 other upstream 453230 15601440 ~ 15611575 (-) False kiaa0930
XR_006250809.1 other upstream 698759 15846969 ~ 15847087 (-) True LOC122343609
XR_006250818.1 other upstream 709174 15857384 ~ 15857502 (-) True LOC122343689
XR_006250819.1 other upstream 731911 15880121 ~ 15880239 (-) True LOC122343700
XR_006250820.1 other upstream 732310 15880520 ~ 15880638 (-) True LOC122343711

Expression Profile