RNA id: XM_043236599.1


Basic Information

Item Value
RNA id XM_043236599.1
length 2460
RNA type mRNA
GC content 0.39
exon number 3
gene id LOC122342633
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 13970264 ~ 13975630 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GGATGCAAGTCTGATGTAAGTTTCCATCTGGGAGGAGGAGCACTTCTTTTCTATAAACTGTCTGCCAGCTTCATCTGAGACTTCCGGTGAGAGGGACACTCTTTGCCGGGgtgtttgttgtgttgtgtttttggtCAGCAAACCGGATTTGCTTCCTCTGCTCGGCTTGACGGACTTCATTTACCGCTCGACATATTTTCTGTTGTCATTGGGAACCTCCGGTTCTCTGCGCTGGTACTAAAATGACTGACAACCATTCACATAAAGAGGAGAAAGCAGATCGCTCTGCTATCAATAAACTGTCTGGGATGAAGAACGAGGTGGAAAAGAGTAATCCAGGAAATTCGAGCCTTGATCAGCTTGAAATTGAAATTGGTAAACTCAGCATTAAGGACTCATCTGACAGAAAAGATATCAGAGTCAaatttttgataaatgttcCAGTGGGGGTAACATCCGAAATGAGTACAAAAGCTGAATCACATTGTCAGAAGTTTCTTGATCTTCTGAAAAGTCAAGCTTTTAGGGAAGAAGATGGGTTCCGGTATGAAGATATTGCTGTCGTTTTTGGCCTTAATGGAAAATATGAAGATGAAGAAATTGTAAAAActgaattgagaaaaactgttgAAAGTGAAATCGCTTTTAAAAAATGGGGCTTTAAATGGCCAGAAAGGAAGGAAATCCCATATCGattaataagagaaaaaaataaacaatccgAGCACACCAAGGAATTAGTAAGAATCTTCAGGGAGAACTACCCTGGGGTTCCGATCTACTTCTGCTTTTTTGACGCAGACCCAGTTGATTTTAATGAGGTGTTGAGTTCTTACATAGATGTAATCATAGAGCACAACTACCCAACATTAATGTCCACTGGTTTTCTGTTCCCTGAAGAGAGCGAGTTCAGAACAAACAGTGAAAAAGACCGTCAGGTGCGCATAATAACAGCCGAGCACTTTCCTCTGGGCACTTACTACCCAGAGCCTAACTTCTGTGTGCTTCTACCTGAAGGATGTGATACCCTTCCTGAGCGTTTTACTAATACAAAATCTAAACACATGAACATGGAATCTCCCGTTTTGATAAGACAAGTTAAACGACGTCAGGGTTTCTCTGCTGtgtttgcaaacaaaaatgcgATTATTACGCCTGATTCACGACAAAAACATAGTCACACCAAGCGATGGACGTGGGCGATTAGTGCTTATGCACACGAAGAGCTTAACGTTACTAAGGCATATAAACAGAAACAGTTTGGAGAAGAATATGAAAATAACAAGCGGAAATCAAATGGTGTGCAAAAGTCTTTGTTAATGGATTTGTTAAAATCGGATGAAGAGGCTCGAAGGATAGAGGAGAAAAAGCCTTTCGAGGGAAATGGTGCAGGTCTAGTTTTTACTGCAGCTAAAGCTGTTCGAGGGTATGCTAAGACGGAGCAAGAAGAGCCAGGAGAGCATGAAGATCCAGAAAAGCTAGGAGAGCAGGAAGATCCAGAAGAGCTAGAACAACCAGAAGAGCAAAAATATCCAGAAGAGCTAGAACAATCAGAAGATCCAGAAGAGCTAGAACAGCCAGAAGAGCAAAAAGATCCAGAACAGCCAGAAGAGCAAAAAGATCCAGGACAGCTAGAAGAGCAAAAAGATCCAGAAGAGCTAGAACAGCCAGAAGAGCAAAAATATCCAGAAGAGCTAGAACAATCAGAAGATCCAGAAGAGCTAGAACAGCCAGAAGAGCAAAAATATCCAGAAGAGCTAGAAGAGCAAAAAGATCCAGACGAGCTAGAACAGCCAAAAGAGCAAAAAGATCCAGAAGAGCTAGAACAGCTAGAAGAGCAAAAAGATCCAGAAGAGCTAGAAGAGCAAAAAGATCCAGAAGAGCTAGAACAGCCAGAAGAGCGAAGTGAGCAAGAAATGCTAAAAGAACTAAAACAACTAGAAGAGCTAATAGAGATAGAGGTGTGATTGATAGAGGGTTGGAAGTTGATGATGTTATACAGACTGATGtataaatgaaaagattttatttacttcttgtctttttttaaaacgtttaacATGAAAACTATGGCataagtgatttttaaatatgttatttatattaatcagtAATCAACTCACTTTTAGAATCAAATCAATCTGTGGGTGGGTTTGGATTGTATCCTGTAATTTCTTTCCTCTTGTACCtttattgttgtaatttttttctttcgtaAACATGCTAATTCtctttttgaatgtaattttctCAATGTAGTCGGTTGGTTTTTCAGATGGTTTTTATCTtttacatttgacttttttttttattgattggtctttcctgtatttttttctttgtaacaGTAAATTTGCTTCGATACGTAAACATGACTGAATACATTATTTATCTCCATCAGGTGTTTAATAAAAGATTTCTTGTTTCCCAGAACTGTCTATTTCAGTAAAGCCTGCAGTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU42350 lncRNA downstream 87857 13882191 ~ 13882407 (-) True G28570
TU42346 lncRNA downstream 88252 13881305 ~ 13882012 (-) True G28569
TU42341 lncRNA downstream 89417 13880031 ~ 13880847 (-) True G28568
TU42309 lncRNA downstream 99650 13869422 ~ 13870614 (-) True G28544
TU42337 lncRNA downstream 102966 13866777 ~ 13867298 (-) True G28564
TU42368 lncRNA upstream 5160 13980790 ~ 13981164 (-) True G28577
TU42387 lncRNA upstream 16421 13992051 ~ 13992802 (-) True G28594
TU42390 lncRNA upstream 18388 13994018 ~ 14074526 (-) True G28597
TU42391 lncRNA upstream 74969 14050599 ~ 14074526 (-) False G28597
XR_006250560.1 lncRNA upstream 92457 14068087 ~ 14070405 (-) True LOC122342415
XM_043237662.1 mRNA downstream 138413 13827191 ~ 13831851 (-) False LOC122343280
XM_043237661.1 mRNA downstream 138413 13827191 ~ 13831851 (-) False LOC122343280
XM_043237565.1 mRNA downstream 185556 13763390 ~ 13784708 (-) False LOC122343235
XM_043237564.1 mRNA downstream 185556 13763390 ~ 13784708 (-) False LOC122343235
XM_043237563.1 mRNA downstream 185556 13763390 ~ 13784708 (-) True LOC122343235
XM_043236601.1 mRNA upstream 175 13975805 ~ 13980615 (-) False alg10
XM_043236600.1 mRNA upstream 1726 13977356 ~ 13980608 (-) True alg10
XM_043236606.1 mRNA upstream 6726 13982356 ~ 13985446 (-) True srr
XM_043236607.1 mRNA upstream 6726 13982356 ~ 13985433 (-) False srr
XM_043236917.1 mRNA upstream 179862 14155492 ~ 14176742 (-) True cerk
XR_006250741.1 other downstream 138413 13815574 ~ 13831851 (-) True LOC122343280
XR_006250767.1 other downstream 271549 13692945 ~ 13698715 (-) False LOC122343399
XR_006250766.1 other downstream 271549 13693180 ~ 13698715 (-) False LOC122343399
TU42098 other downstream 547725 13411624 ~ 13422539 (-) False G28397
XR_006250597.1 other downstream 608326 13316932 ~ 13361938 (-) False tmcc3
TU42429 other upstream 193792 14169422 ~ 14176725 (-) False cerk
TU42539 other upstream 720230 14695860 ~ 14697186 (-) False LOC122342862
TU42549 other upstream 832967 14808597 ~ 14810137 (-) False LOC122342642
TU42583 other upstream 1048957 15024587 ~ 15027618 (-) True LOC122342864
TU42581 other upstream 1050480 15026110 ~ 15027618 (-) False LOC122342864

Expression Profile