RNA id: XM_043236600.1


Basic Information

Item Value
RNA id XM_043236600.1
length 2227
RNA type mRNA
GC content 0.45
exon number 3
gene id alg10
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 13975805 ~ 13980615 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AGTGGAACTGATTGCTCACGCTTCCGGTTTCGATACGGACGCTAGTATGCGACGCACCAGTAAGCTGTCAAAaatcttaaacttaaaaatgcgGTTTTTGCACGTACGTGCACATTTTTTGACGTTGTAGAGGAAGATCGATTACAAGGAACGAATGCTTCTCATGCCCCCTTAATCAACCTCATCTACCATTCATTTCCATAAGGGTGTTATCAAAGATcgagtgttttgtgtttttgagtaAAGCATGGAGAGATTCGAGGTTTATATCTTCACTGCTCTGTGCAGCGTTAACTTTCTGATTTCATGCCTTCTGTTCTCTAAAATCACACGGGAACAGAGAGAGCCGTACATGGATGAGATATTCCATGTTCCTCAAGCCCAGAAGTACTGCGAGGGGAAGTTTAACGAGTGGAATCCGATGATCACCACTCTTCCCGGGTTGTATCTGGCCTCGGTGGGTCTGATCAAGCCGGTGGTGTGGTTAGCTGATCTGAAGGGCAGTGTGATCTGCTCCACTGCCATGCTGAGATTCATCAATCTGCTCTTTAACAGCGGGAATCTCTACATAATCTACCTGCTCATCTGCAGACTTCACGTGAAAGATAAGTCCCGTTCCGCCGCTCGTCGAATGTTCTCCGCCCTGGCTCTGTCCACTTTCCCGGTGCTGTACTTCTTCACCTTCCTGTACTACACCGACGCTGGCTCCACATTCTTCACCCTCTTCATGTACCTCATGACGTCGTACGGAAGCCACAAAGCGGCGGCGCTTCTCGGGGTCTGCGCCATTCTCTTCCGACAGACCAACATCATCTGGGTGGCGTTCTGTGCCGGCACCGTGGTGGCTCAAAAAATGGACGAGACGTGGCGGACCGAACAGTCGAAGAAGAGAGACGATAAGCTACCTTCTCAGGTCCCCCTAACCATCAGCGGGGCAACGAGAGTGATGCGTTTCCTGTTGGAATTCCTCAAAACGCCCAACAATATAAAAGCCACGGTCTTGTCGACGTGGCCGTATATTGCCGTAGCCGTGCTTTTCGCCGTTTTCCTTGTGCTGAATAACGGGATCGTGGTTGGAGATCGTAGCAGTCACGAAGCATGTCTGAACTTTCCTCAGCTTTTCTATTTCCTGTCGTTTGCTCTTATGTTTTCTCTTCCCACCTCGCTGAGTTACCAAAAGGCAGTCAGGTTTCTGCAGTCTTTAAGAAAGCAGCCCTCGGTTTATGCCGCGCTGGTGACGCTCTTCCTGCTTTTAGCCTGGAAATTCACGTTTGTTCACAAGTACCTGCTTGCGGACAACAGGCACTTCCCGTTTTACGTGTGGAAAAGGATTTTCCAGAGACACGAGCTTGTCCGTTTCCTGTTGGTCCCTGGATACGTGTTTGCGGCATGGAACTTTCTAGATGCTCTGAGGTCCAGGTCGTTGTTCTGGTTCCTGGTTTTCTCCACGTGTTTGCTGGGGGCCACCGTTccacagaaactcctggagttCCGGTATTTTATACTTCCGTATCTGTTGTATCGCGTCCACATCCCGATACCGTCTTTACCCAGACTGCTGCTCGAGTTTGGCCTCTACACCGCGGTTAACGCGGCTACGGTTTACGTGTTTGtctataaaacatttcagtggCCCAACAGCACTGCTGAGCAAAGATTCATGTGGtgacaaaaatatgaaacgCCATTTTCTATCCACCGAGGAAAAGGAGTGACGTTTTCACTATTTATCAATAATCAAAATAGTTGTACTTCACAATGGAACGCCACGCCGTTGCTGTACTGTTGAGCCATGCtccattttgaatttttatgttATCTAGTTTGTTTGAAGCCACTGGTCATATTAAGTCGTTCGCAAATGTATGGGCAAggatttagttttagttcattttgtaTACTATGTAATACGTATGTGTGCAgttactgttaaatgtaatcattCCGACCCAACCagaattgatttttgttgtcatttttgttgtaataGTCGTTCACCTCatgtttgtgtattaaatattatttaagttCACTTAATTCAGATAATTATTATGGTGGCTGTTGTTCACGGTGTagtcttacatttacattcgTTTCATTTTCGTCTCATTTCTTCGTGGtttcaaaatttcaacgttAATTTCTCATTGTAAATGATTTGCGTCCGTGCTGTTTGTGTTTCACTTACTTCTTTTCAATATGAATTAAATTCCTTTTGTTACATAAA

Function

GO: NA

KEGG:

id description
K03850 ALG10; alpha-1,2-glucosyltransferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU42350 lncRNA downstream 94949 13882191 ~ 13882407 (-) True G28570
TU42346 lncRNA downstream 95344 13881305 ~ 13882012 (-) True G28569
TU42341 lncRNA downstream 96509 13880031 ~ 13880847 (-) True G28568
TU42309 lncRNA downstream 106742 13869422 ~ 13870614 (-) True G28544
TU42337 lncRNA downstream 110058 13866777 ~ 13867298 (-) True G28564
TU42368 lncRNA upstream 182 13980790 ~ 13981164 (-) True G28577
TU42387 lncRNA upstream 11443 13992051 ~ 13992802 (-) True G28594
TU42390 lncRNA upstream 13410 13994018 ~ 14074526 (-) True G28597
TU42391 lncRNA upstream 69991 14050599 ~ 14074526 (-) False G28597
XR_006250560.1 lncRNA upstream 87479 14068087 ~ 14070405 (-) True LOC122342415
XM_043236599.1 mRNA downstream 1726 13970264 ~ 13975630 (-) True LOC122342633
XM_043237662.1 mRNA downstream 145505 13827191 ~ 13831851 (-) False LOC122343280
XM_043237661.1 mRNA downstream 145505 13827191 ~ 13831851 (-) False LOC122343280
XM_043237564.1 mRNA downstream 192648 13763390 ~ 13784708 (-) False LOC122343235
XM_043236606.1 mRNA upstream 1748 13982356 ~ 13985446 (-) True srr
XM_043236607.1 mRNA upstream 1748 13982356 ~ 13985433 (-) False srr
XM_043236917.1 mRNA upstream 174884 14155492 ~ 14176742 (-) True cerk
XM_043237009.1 mRNA upstream 707265 14687873 ~ 14704622 (-) True LOC122342862
XM_043236609.1 mRNA upstream 724185 14704793 ~ 14725207 (-) True LOC122342640
XR_006250741.1 other downstream 145505 13815574 ~ 13831851 (-) True LOC122343280
XR_006250767.1 other downstream 278641 13692945 ~ 13698715 (-) False LOC122343399
XR_006250766.1 other downstream 278641 13693180 ~ 13698715 (-) False LOC122343399
TU42098 other downstream 554817 13411624 ~ 13422539 (-) False G28397
XR_006250596.1 other downstream 615418 13324525 ~ 13361938 (-) False tmcc3
TU42429 other upstream 188814 14169422 ~ 14176725 (-) False cerk
TU42539 other upstream 715252 14695860 ~ 14697186 (-) False LOC122342862
TU42549 other upstream 827989 14808597 ~ 14810137 (-) False LOC122342642
TU42583 other upstream 1043979 15024587 ~ 15027618 (-) True LOC122342864
TU42581 other upstream 1045502 15026110 ~ 15027618 (-) False LOC122342864

Expression Profile