RNA id: XR_006250621.1


Basic Information

Item Value
RNA id XR_006250621.1
length 1859
RNA type transcript
GC content 0.45
exon number 12
gene id trmu
representative False

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 13985517 ~ 13991772 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

aagaactTTTATTATGGCGACCTTCATAGCGGTGGCGTGAAATGTCTCTTTATCGTCTCTTACTTGTATTTGAAcgcatattaaaatagatgtCATGGGTGTAGTTAGACATGTTGTGTGTGCTATGTCTGGAGGGGTTGACAGTTCTGTCAGTGCACTGTTACTCAAAAGAATGGGCTACCATGTGACTGGTGTGTTCATGAAGAACTGGGACTCTCATGACGAGAGAGGGGTCTGTTCATCGGAGAGAGACTGCGAAGATGCTTATAAAGTGTGCACGATGCTGGATATGCCTTTCCACCAGGTCTCATACGTTAAAGAATACTGGCACGAAGTATTTAGTAATCTTCTTAGGGAATACGAGAAGGGCAGAACACCGAATCCAGACATACTGTGTAACAAACACATCAAGTTTAAGCACTTCTATCAGCACGCAGTTAATACTTTAGGTGCTGACGCCATGGCAACGGGACACTATGCCCGGACATCCCAGGAGGACGAGGAGGTTTTTCAACAGAAGCACGTTGCACCGCCTAGAACCCTCTTCAGAGATCGCTTTGAAATTAGAAAGCCTGTGCGGCTCTACCGAGGTGCTGATCGCTCGAAGGACCAGACGTTCTTTCTCAGTCAAATTTCCCAGGATGCTCTCAGACACACCGTATTTCCCCTAGCCGGGCTAACCAAAGACTTTGTGAAGAAAATGGCGGCTGAGGCCGGCTTCCAGCATGTTCTAAAGAAAAAAGAGAGCATGGGAATCTGTTTCATTGGGAGGAGAAATTTTGAGAACTTTATCCTTGAGtacataGAGCCCAAACCAGGAAACTTTGTCTCCATTGAAGATGGGAAGATTATGGGACAGCATAAAGGCTGGTTCACGTTAACACTGGGTCAGAGGGCTAGAATAGGAGGACAGGTTGATCCTTGGTTTGTAGTAGATAAAGATACCACAACCGGAGATGTATTCGTGGGCCCGACCACGAACCACCCGGCACTGTTCAGAGACACGATACAGACAGGACGCTTTTACTGGATCGCCGAAGACCCGCCAGCTGAACTTGTCCGAACTCAGATGATGGAATGCCACTTCCGTTTCAATAACCGGATGCTTTTGActccaTGTACCGTAACCTTGAATCTAGACGGGTCGTTGTGGATAATCTTGAAAGAGCCACAAAGAGCGTTGACACCTGGACAGTTTGCCGTCCTGTATAAGGGAGATGAGTGTTTAGGCAGCGGGAAGATCGTCCGTCTGGGACCCACGAAGTTCACTCTTCAGAAAGGTGAAAACTGCACGAGCTGCCCACCTAAACACACGAACCGACCTCATCCGGAGCCTGCCAGCTGAGACGCATGCAGCACAAACCAGCACTACTCTTATGTTTTACGTATGGGACGATGACAAGAAgatttcgTACATAGAAGTCACGTCCGGACCTATGCAGTCTTTTCAGCTGCTAACCGGCGCTGCTCAAGACTTGAAACCACGTTTTCAAAAGCGTTCCGCCGACATCAATCTTGAGCAAATGGTTCGTCTCTCCTTCGATAGTCACTCAGACCAGCATAGAGGTCTCGAAAGTAGCACCGGGAACGGTTCTCATTCAGAAAAcgtacgtttttttttgttcgtaacacactggtttgatcttttgaagtttgaatgatttgttcaatttttgttttattgggtAAGAATAacatcttttcattttacatacTCGGCGCAAAGAATGAATGAGTAAAGTGCCATTTCCATCCTATTTCTTTATATACCAAAAACGAATCCCCATTGGCATTTGCCAAATTTACTTACGATAAAcgaaacaaaacatgaaaataaattgagaaatgatcaaaaaaaa

Function

GO:

id name namespace
GO:0008033 tRNA processing biological_process
GO:0005739 mitochondrion cellular_component
GO:0000049 tRNA binding molecular_function
GO:0005524 ATP binding molecular_function
GO:0016783 sulfurtransferase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU42214 lncRNA upstream 156980 13828025 ~ 13828537 (+) True G28486
TU42167 lncRNA upstream 225405 13757967 ~ 13760112 (+) True G28446
XR_006250763.1 lncRNA upstream 465060 13516630 ~ 13520457 (+) True LOC122343375
TU41976 lncRNA upstream 471924 13510856 ~ 13513593 (+) True G28312
TU41953 lncRNA upstream 515382 13467404 ~ 13470135 (+) True G28298
TU42246 lncRNA downstream 251 13992023 ~ 13992800 (+) True G28503
TU42247 lncRNA downstream 291 13992063 ~ 13992800 (+) False G28503
TU42249 lncRNA downstream 291 13992063 ~ 13992831 (+) False G28503
TU42486 lncRNA downstream 816825 14808597 ~ 14809661 (+) False G28667
TU42487 lncRNA downstream 816825 14808597 ~ 14809661 (+) True G28667
XM_043236608.1 mRNA upstream 3343 13980776 ~ 13982174 (+) True tprkb
XM_043236720.1 mRNA upstream 24419 13882914 ~ 13961098 (+) True LOC122342701
XM_043237084.1 mRNA downstream 2358 13994130 ~ 14065681 (+) False celsr1a
XM_043237081.1 mRNA downstream 2359 13994131 ~ 14065681 (+) False celsr1a
XM_043237082.1 mRNA downstream 2359 13994131 ~ 14065681 (+) False celsr1a
XM_043237085.1 mRNA downstream 2359 13994131 ~ 14065681 (+) False celsr1a
XM_043237086.1 mRNA downstream 2359 13994131 ~ 14065681 (+) False celsr1a
XR_006250631.1 other upstream 33092 13882909 ~ 13952425 (+) False LOC122342701
XR_006250632.1 other upstream 46291 13882894 ~ 13939226 (+) False LOC122342701
TU41881 other upstream 454886 13323288 ~ 13530631 (+) True G28249
XR_006250630.1 other upstream 551911 13405929 ~ 13433606 (+) False vezt
TU41888 other upstream 669833 13313868 ~ 13315684 (+) False G28252
TU42431 other downstream 185692 14177464 ~ 14184260 (+) False tbc1d22a
TU42446 other downstream 408257 14400029 ~ 14482821 (+) True tafa5a
TU42445 other downstream 433159 14424931 ~ 14482821 (+) False tafa5a
TU42601 other downstream 1215379 15207151 ~ 15214432 (+) True LOC122343376
TU42701 other downstream 1447562 15439334 ~ 15555682 (+) True G28806

Expression Profile