RNA id: XM_043236607.1


Basic Information

Item Value
RNA id XM_043236607.1
length 1577
RNA type mRNA
GC content 0.46
exon number 7
gene id srr
representative False

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 13982356 ~ 13985446 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AAACGGTAACACCGCATGAAGCGCGTGGGGTTTAAAGtacacagaaatacacagaaaaaaagattaaataggCGTGACTTTATGATCCAAAGctatatCCAATAAAGTTTTTAGTGAAGGATGGGAGATTTCTCGGCAGACAGCGTTACTATCGAGGTCCTCAGAGAAGCGTGTGAGACCGTCAGGAGCAGCCCTCTGGATGTGATCAAAACACCGATGATCCCGTGGTCCCAAACCACGCTTCCACTCCACAAACCCTGCAACGTTCACATCAAGCTGGAGAACATGCAGAGGACCGGTTCGTTCAAGATAAGAGGTGTTTCGAACCAGTTCGCCCGGAGACTCAAAGGGGGCCGTTATGTGACCATGTCTGCTGGGAATTATGGAAAGTCTTTTGCGTACGCCTGTAAGCATTACGGATCCAAAGGCAAAGTGGTGATGCCGGAAACCGCCCCCATCTCCAGATCCGTTCTCATACAAAGTTTGGGAGTCGAGGTTGAAAGGGCACCAACTCCTCGTCTCATGGACGTCGTCAACCGgagtgttcgagaggagggcaTGAGTTTCCTACATTCCTACGATGACCCCGATATTATCGCTGGACATGCCAGTTTAGGTTTTGAGATCCTGGAAGTCGTACCCTATCCAGATGTGGTGGTTGTTTGCTGTGGCGGAGGAGGGTTACTTGCCGGTGTGGCAGCTGCCATCAAGCTGTCTGGTTGTGAGAACACGAAGATCTATGGAGTGGAACCAGAAGGAGCGTGCACGATGTACAAGAGCTTCATTGAGAAGAGGCCTGTCGGCATGGATGCTAAAAGCATTGCTTCAGGGCTAGCGCCGCCATTTGCAGGTTCTTTGCCGTATGAGCTGTGCCAGAAATACGTCGAGAAAATTGTGCTGGTGACCGACGAGGAGATCCGATCCGCCGTTTCCGCACTTTATAAGGCTGGACTCGTGGTCGAACCTTCGGGCACCGCGGAGTCGCCGCCATCTTGAATGACAAAATACCAGATATCGACGGCAAGGATGTGGTGGTCATCCTCAGCGGAGGAAACATCGGCAAAGATGAGCTCAGCAACTTTCCTGACTAAGTTAAAAGGTTATTTAGATAATAATAAAGGCGGATGATGGTATATGGGCTGTGAGGTTCCATAAAACCGCGAGGAAagtgattaactgcatccaaaatcaTTTTGAAGAGGATacgttattttcttttcaacatCGATTACGTTATTCGCATTGACTACGGTCTTGCTTATTTCTTATGCTGGAGATCTGGTTGGTTCTGCAACTTATTCAACCCCAAGTGAGAAAGTAGACTCTGCGGTTCAGATTGAAGGCAAAAGGAATATTTCGGCACTATTAATTTCAAGTGATCAAATCAAATTGCACGAGTTGCTTTGGTTACAGTGTAGGCTTTTTGATGAGGCTTTTAAAACGGATGGAGGTGCATCCTCTCAGCCTCCAAACAAGCATATatagagatttttttgtttatcttttatGATAGGTTGAACATCTCATCCCATGTAATGCGATTTTGTAAACATGAACAAATGATGACTAAACTTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU42368 lncRNA downstream 1192 13980790 ~ 13981164 (-) True G28577
TU42350 lncRNA downstream 99949 13882191 ~ 13882407 (-) True G28570
TU42346 lncRNA downstream 100344 13881305 ~ 13882012 (-) True G28569
TU42341 lncRNA downstream 101509 13880031 ~ 13880847 (-) True G28568
TU42309 lncRNA downstream 111742 13869422 ~ 13870614 (-) True G28544
TU42387 lncRNA upstream 6618 13992051 ~ 13992802 (-) True G28594
TU42390 lncRNA upstream 8585 13994018 ~ 14074526 (-) True G28597
TU42391 lncRNA upstream 65166 14050599 ~ 14074526 (-) False G28597
XR_006250560.1 lncRNA upstream 82654 14068087 ~ 14070405 (-) True LOC122342415
TU42554 lncRNA upstream 826007 14811440 ~ 14825838 (-) True LOC122342647
XM_043236601.1 mRNA downstream 1741 13975805 ~ 13980615 (-) False alg10
XM_043236600.1 mRNA downstream 1748 13977356 ~ 13980608 (-) True alg10
XM_043236599.1 mRNA downstream 6726 13970264 ~ 13975630 (-) True LOC122342633
XM_043237662.1 mRNA downstream 150505 13827191 ~ 13831851 (-) False LOC122343280
XM_043237661.1 mRNA downstream 150505 13827191 ~ 13831851 (-) False LOC122343280
XM_043236917.1 mRNA upstream 170059 14155492 ~ 14176742 (-) True cerk
XM_043237009.1 mRNA upstream 702440 14687873 ~ 14704622 (-) True LOC122342862
XM_043236609.1 mRNA upstream 719360 14704793 ~ 14725207 (-) True LOC122342640
XM_043236610.1 mRNA upstream 720847 14706280 ~ 14725207 (-) False LOC122342640
XM_043236612.1 mRNA upstream 823110 14808543 ~ 14810711 (-) True LOC122342642
TU42363 other downstream 1797 13975357 ~ 13980559 (-) True G28575
XR_006250741.1 other downstream 150505 13815574 ~ 13831851 (-) True LOC122343280
XR_006250767.1 other downstream 283641 13692945 ~ 13698715 (-) False LOC122343399
XR_006250766.1 other downstream 283641 13693180 ~ 13698715 (-) False LOC122343399
TU42098 other downstream 559817 13411624 ~ 13422539 (-) False G28397
TU42429 other upstream 183989 14169422 ~ 14176725 (-) False cerk
TU42539 other upstream 710427 14695860 ~ 14697186 (-) False LOC122342862
TU42549 other upstream 823164 14808597 ~ 14810137 (-) False LOC122342642
TU42583 other upstream 1039154 15024587 ~ 15027618 (-) True LOC122342864
TU42581 other upstream 1040677 15026110 ~ 15027618 (-) False LOC122342864

Expression Profile