RNA id: XM_043236609.1


Basic Information

Item Value
RNA id XM_043236609.1
length 3331
RNA type mRNA
GC content 0.47
exon number 14
gene id LOC122342640
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 14704793 ~ 14725207 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTTTATCAGGAAGAAGAAAACCGCTATGTAGCCAAACTGCTTAGGAGAAACGAGCAACGTTTTAGCGactgtagtatttttattaaagaaaaattaaagcGTCGGGGCGATATAGTATAAACTCGATTTGAATATGAAAGTGAGATAACTAGCGTGTATTTGTTGTTAAGAGCAGAAATGGAGAAGCAGTCGCGTCTGTTGTGTTCTGAGCTGTGCGTTCAGCGCAGACCGTATGAGGTTACGTTAAACTGCGCGATTCTCGCGTGGAAAGACAGACAAATCGCCAAAAAACACACCGGACGCGCCATATATGGAGCTGTCAAAGCGGGTAGTCACTGCGTCCCGGTGTGCGAGATTATAGCCGTTCAGGAAAAGGAAGATGACTCTCCTTGCAAAGACACTGGAAAATGGCAGAAGGTCCCTCAGAGCCCAGCAGACTCCTGCCAGCACGCTTTCACAGTGTACTATGTAGAGAGGACGAGGCAGCGCTGCTGGCGGTGCAGCAACGTGACTTTCCACTGCTCTGAACATTCCCTGTGTCTGCTCTGGGTCCAAACTATAAGGGAACAACTTGCACTGCTGACCAATCGACCGAAGAGCTTGCTAGTGTACATCAACCCCTACGGAGGAAAACAACGTGGGAAGCAGATTTACGACCACAAAGTGGCCCCCATCTTTTCCCGGGCTTCCATTTCCACCGACGTGATTGTTACGGAGCGCACAAATCATGCCAGAGACCACTTGAAGACAGAGGCTGATCTGAAGAAGTATGATGGtgTGGTGTGTGTCGGAGGTGATGGCATGTTCAGCGAGATTATGCATGGCCTCGTCTCCCGTACGCAGCAAGAAGCAGGTGTGGATGAGAACTCCGTGGAGGAGACCCTTATGCCGTGTGGGGTTCGCATCGGCATCATTCCTGCGGGTTCGACCGACTGTATATGCTACGCCACAGTTGGCTCAAATGACCCCGTCACCTCAGCACTGCATATCATCGTGGCGCCTAGCACGGGGTCCCGACGGCATCAGCAATGCATCCTGGCTTTTTCTACAGGTGATTCTCAGCCAATGGACCTCTGCTCGGTGCACAACGAAGACGGCTTCCTGCGCTACTCTGTCTCACTGCTGGGTTACGGGTTCTACGGAGATGTGTTGACCGACAGCGAGAGGAAGCGCTGGATGGGCCCTGCCCGTTATGATATCTCAGgtgttaaaacatttttgtcacacCGCTACTATGAGGGAACGGTGTCTTTCTTACCTGCTGAAGGGAACTTGGGAACTCCTAGAGACAAAATGCAGTGCCGAACTGGATGTAGTGTCTGTCGGCAATCCTCTTCTGACAAGCTGGTCAGCAAAAATGAAGACAGCGTTTCCGATGCTGAGTGTCAGGACACTTGGACCGTCATCAGGGGAAAGTTCTTGGCCATCAATGCCGCCAGCATGAGTTGCGCGTGTCCTCGAACTCCTAAAGGCCTGTCGCCGTCGGCGCACTTAGCAGATGGAACAACTGACCTCATCCTCGTCAGGAAGTGCTCCCGACTCGACTTCCTGCGCCACCTGCTGCGCCACACCAATAAGGACGACCAGTTTGATCATTCATTTGTGGAGGTGTACCGGGTCAGGCGGTTCCGATTCGCCCCCAGATATCAGGAGTGTGATTCTGAAGTGGACCTGAGAGAAAGCGGAGCGACGGGCAAGCGATTTCTGAGTCAGATCTGCAGGGAGCACAGAGCCTGTGGCTGCATGCCGTCCCAGAGCAACTGGAATTGCGACGGCGAGATCCTCCCACACACTGCCATTCAAGTCCGGGTCCACTGCCAGTTAATCAAGCTGTTTGCGAGAGGCATCGAAGAGCAGCCTGTGTTTGAGGACCCGTACGCTCACTGTGCAATATAGATCTCTactccacttaaaaaaaaaaaagaaaatccagcTGGATCATTAAGGATTGAGATTCTCCGAATGGAAGAGTCACCTTCAGCTCAGCACACCGTCGTGCTGTTTCTTATATAACCCTCGTGAAGATGCGTTGAAAACGCGAAGCTGGAGTCAACCGCATTTATGTAGGCTGCGTTAGAGTTGTGTAAGATAGGATCAGCTGTTTCGGCTAGGCATTAGCATTGCTGATTTTTCATTGCAAGTCCTTGAAGTTGCTGGCGGTATCTCTTGCTTGCAACTTCCAGTTGTCGGCGTTTGTCTTCCACCACGATCAAGCTGGTCTTGAGAGTAGCGTTAATTGAATTCCAAAGTCAGATTCCTGGAACTGTGAAAACTCTGGCGTGTTGATGAAAACATTCCTCTTGGCTGCAccttcactgttttttttttttgtaaagcacaTGAGGTGGTCACCTGATGAAGTTATCGGTATCCAAAAAAGTTTGTGGGTTAAGTAGGTCGTTCAAAAATTGAAGCTTGTTAACAAATTTGAGTTAAATTCTTCTGTTAAAcataaaagttatatattttgaaggatGTTGGTAACCGAACAGTAGCTGGTTGCCATTGATTTCCGTAGTGTGTGGGAAAAATACGATAAAAGTCACTTcctcaactattcctttaaaaaggtAGCATGAAAAAAGTAACGTATGGCATATAGACAGTGAAGCCTGCATTGAGTAACATTTACACGTGAGCTGTACATATTATGCAAATGGCACTTCAGATCAGTGTAAATCCTGTAAAAACGTACCCCTTTGACCAATTCTAATGTATCATTTCCCACTCTTATCACGGTCGGTTTTGTTTTCCCGACATTTCGCGCATGGAAATGCAGTATTAGTGAGCTAGACGCTGACAGCTACACGGTGTCACTGCAGGGTCAGTGTACGTACGGCTGTTCATCAGGCGGAATGTAAATACTGTAGCGTTCTTTTCTGTGTCGTCTTCTTTGGCGGCACCCCCCGAGAATATTTCCTCCcttttataatgaatttttgCGTTTGCGTTTCTTATGCTGATGTCTTATTTCTCACGAAAGCTCTTATTGTTCCTGCGGTATCGAAGAATGAAGGAGTTTATGATAGACAGAGAAATTGCATATCGCTTGTTGTGCATGTCAGCTgctttaatatgcaatttttaaaatgtttctttgagCTGTGCTTGTTATTGAGGGCGTGGATTTCCCATGATGCATCTGAAGAAGCAACACAACTTCTGGAGCCGTTACAGGGAAAACATTGTTTGTGTCTTTCAGAGACTGAAAGATTGCAGGGAAGCTCATTTttaccacataaaaaaaatgctttggtaaattataattatgtcATAATTGGGTCATTAGCTgttattaaaaactgaaataaaaaaattaaaatgcaaaaat

Function

GO:

id name namespace
GO:0007205 protein kinase C-activating G protein-coupled receptor signaling pathway biological_process
GO:0008152 metabolic process biological_process
GO:0003951 NAD+ kinase activity molecular_function
GO:0004143 diacylglycerol kinase activity molecular_function

KEGG:

id description
K04715 CERK; ceramide kinase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU42390 lncRNA downstream 630267 13994018 ~ 14074526 (-) True G28597
TU42391 lncRNA downstream 630267 14050599 ~ 14074526 (-) False G28597
XR_006250560.1 lncRNA downstream 634388 14068087 ~ 14070405 (-) True LOC122342415
TU42387 lncRNA downstream 711991 13992051 ~ 13992802 (-) True G28594
TU42368 lncRNA downstream 723629 13980790 ~ 13981164 (-) True G28577
TU42554 lncRNA upstream 86233 14811440 ~ 14825838 (-) True LOC122342647
XR_006250623.1 lncRNA upstream 98566 14823773 ~ 14825837 (-) False LOC122342647
TU42586 lncRNA upstream 277942 15003149 ~ 15003429 (-) True G28738
XR_006250554.1 lncRNA upstream 292578 15017785 ~ 15023863 (-) True LOC122342397
TU42674 lncRNA upstream 484477 15209684 ~ 15213451 (-) True G28789
XM_043237009.1 mRNA downstream 171 14687873 ~ 14704622 (-) True LOC122342862
XM_043236917.1 mRNA downstream 528051 14155492 ~ 14176742 (-) True cerk
XM_043236606.1 mRNA downstream 719347 13982356 ~ 13985446 (-) True srr
XM_043236607.1 mRNA downstream 719360 13982356 ~ 13985433 (-) False srr
XM_043236601.1 mRNA downstream 724178 13975805 ~ 13980615 (-) False alg10
XM_043236612.1 mRNA upstream 83336 14808543 ~ 14810711 (-) True LOC122342642
XM_043236615.1 mRNA upstream 85801 14811008 ~ 14822661 (-) True LOC122342645
XM_043236614.1 mRNA upstream 85801 14811008 ~ 14822661 (-) False LOC122342645
XM_043236616.1 mRNA upstream 101060 14826267 ~ 14847177 (-) True LOC122342646
XM_043237012.1 mRNA upstream 300177 15025384 ~ 15027663 (-) False LOC122342864
TU42539 other downstream 7607 14695860 ~ 14697186 (-) False LOC122342862
TU42429 other downstream 528068 14169422 ~ 14176725 (-) False cerk
TU42363 other downstream 724234 13975357 ~ 13980559 (-) True G28575
XR_006250741.1 other downstream 872942 13815574 ~ 13831851 (-) True LOC122343280
XR_006250767.1 other downstream 1006078 13692945 ~ 13698715 (-) False LOC122343399
TU42549 other upstream 83390 14808597 ~ 14810137 (-) False LOC122342642
TU42583 other upstream 299380 15024587 ~ 15027618 (-) True LOC122342864
TU42581 other upstream 300903 15026110 ~ 15027618 (-) False LOC122342864
XR_006250613.1 other upstream 876233 15601440 ~ 15611575 (-) False kiaa0930
XR_006250809.1 other upstream 1121762 15846969 ~ 15847087 (-) True LOC122343609

Expression Profile