RNA id: XM_043236615.1


Basic Information

Item Value
RNA id XM_043236615.1
length 3390
RNA type mRNA
GC content 0.49
exon number 10
gene id LOC122342645
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 14811008 ~ 14822661 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGTGGCGTGAGTGAGTAACGTCCGTGTTTACTCCACCTATCGGCGCGGTTTACTGCGATTCACCCGCTTTGAGACCCGGTGAGCCTGATGGATTTACGCCCGGACTCGGTCACACACCGGCGGCTTTCATTCTGCGCTCGGACCGCGTACCGAGTTAAATGACAGGGACTGCGTGTGCTCGCCGCGACGAGGGTCTGTCACTTTTCCGATCTGCTGCGAAAATGACCTTTGCGTGGATCAAAACAGACGGAAAGTTGGACGGAGGAAGTTGAAGTAAAGTGAATATATTAGCCAGCAGCGCTAGCGGCGGTGCTCAAACGACACTTGCTTAATATTTACGTGCCGTTTGATTCCATAAAGTGCGGAAGTAAACGTGTAAATAGTGTTTTATACGGTTTTTGCGTCACCCCGCTGTTTGTTTCCAAGTTAGTGCTTTTAAGTTTATTAGCTTGACTTGCTAGCTGTCATTTGAACTACCTAGAACATGTTGTTCATTTACCACTTTCGGTGTGTTTTACGTTAGTTCGCTTGATAAACGTTTAACGCTTTTAACCTCATCGTGTAAACGAACAATTTCCCACAGAAGTCGTTCAGAGGCGATCTGTCATAAGTGTCAACCGTCTCAGATGTTTCTACTGAAAGTCCTTAGCAGAAACAAATACAGTCACAAATGAGACTGCTGGCACACGGTTACAGGCCTTAATGTTCATGGCATTGGCTCggattgtttattaaaattaataatatctCAGTTTGTTTCTCTTGTGAAACTTAAAGGAGACACTTGTAAGATTGCGGGGTCAATCTTCAACAGAATTACGCACAGCTCTCCAGTTTGCTCCATTTAATCTCATTGCTGTTTCTTAAACATTTGAGATATGCTGTCATTTTGCTCAAATCGCGTTTATATTAGTTTACACGAACAGACGTCCATATAGCTGTGTACAGTAGCGACCTGCATTTCGATAACTTGCATTTTGAATAATCTCGGTATTGATAAGCTACGAAGAAAAATGGCTGTGTACTCAAAACTGCCCTCCGAGCTGAAGAAACCCCTTGTGAGAAACGCCGTTGTCCTTCTTGTCGCGCTGTATGGGGCCAAAAAACTTTCCCCTTACGTATGTGGCAAGCTCAAGCGAAGTACTAGTAAACAGGTCAAGGCCGCTGACCCGGTTAGCGCCGGTGAAGAACCCCAAGAAGTGGAAGCTgcgaagaaaaagaaaagctcCCCGGCTGTGAACCGCGAGTTCTTCGAGAGGTTGCTTCGTCTCTTGAAAATCCTCTTTCCTCGGCTTTTCTGCAAAGAACTCTGCCTGCTCGGTTTCCACTCTCTAGCTCTCATTTCACGCACCTTTCTCTCCATCTATGTGGCCAATTTGGATGGGCAAATAGTGAAAACCATTGTGAAGAAAGACCCCAGGGCGTTTGTGGTTGAGTTAACCAAATGGCTGCTCATCGCCATTCCCGCCACCTTCGTGAACAGCGCCATCCGTTACCTGGAAGGTCAGCTGACCCTCGCCTTTCGCACCCGGTTGGTCACCCATGCCTACATGATGTATTTCAGCGATCAGACGTATTACCGCGTAAGCAACATGGACGGCAGGCTGGCGAACCCCGATCAGTCTTTGACCGAAGATGTGGTGATGTTCGCTGGCTCTGTGGCTCATCTGTACTCCAATCTGACCAAGCCTATCCTCGACGTAGTGGTGACCTGTTACACGCTCATTAAAACGGCCGAGTCAAAAGGCGCCAACACCACTTGGCCCTCCATCATAGCTGGCTTCGTGGTGGCACTTACTGCCAAGATACTGAGAGCGTTCTCGCCCCGCTTTGGGAAGCTGGTGGCCGAAGAAGCCAGGAGGAAAGGAGACCTGAGGTACATGCATTCGCGCATCATCGCCAATTCAGAGGAGATTGCCTTCTACGGAGGACATAAGATCGAGATGCTGCAGCTGCAGCGGAGCTACACGGCGCTGTCCGGACAGATTAACCTGATCCTGTTCAAGAGGCTGTGGTATGTCATGCTGGAACAGTTCCTGATGAAATATCTCTGGAGCGCATCGGGCCTGGTCATGGTCGCTGTGCCCATCATCACTGCCACCGGATACTCTAAATACGATTCAGAGGATGTAAAACAGGCAGCCCTGGGGATGAAGGAGGAGGACTTGGTGAGTGAACGCACACAGGCCTTCACCACGGCCCGGAACCTTCTGAACGCTGCAGCTGATGCAGTGGAGAGGATCATGGTCTCCTACAAAGAGGTCACAGAACTGGCTGGATATACGGCTCGTGTATATGAGATGTTCGAGGTGTTTGAGGACGTGCGTGTCGGAGTGTACCGTCGTTCAGCCTTAGAGGTGAAACCAGAAGAGACCGGGGCCACCGGGAAGATAAAACATGGCATGAGAGTGGAGGGGCCGCTCCAGATCAGAGGAAAAGTGATAGATGTGGATAAAGGTATAGTCTGCGAAAATGTGCCTATAATCACTCCTAATGCAGATGTGGTTGTGTCCTCCTTAAACTTCAAGGTAGAGGAAGGGATGCATTTGCTGATCACAGGGCCAAATGGATGCGGGAAAAGCTCCCTGTTCCGGATCCTCAGTGGCCTGTGGCCTGTGTACGGTGGACTTCTGCACAAACCCTCACCTGAGCACATGTTTTACATCCCACAGAGACCGTACATGTCCATCGGAACGTTACGGGACCAGGTCATCTATCCCGACTCTCTAGACGACATGCACGACAAGGGCTACAGAGACAGGGACCTCGAAGTTATTCTGGACATTGTCAATTTAAACCATATTGTTACCAGGGAAGGAGGGTGGGATGCCGAGCTGGACTGGAAAGACGTTCTTTCTGGAGGCGAGAAACAGCGTATGGGCATGGCGCGCATGTTTTACCACAAgcCTAAGTATGCCTTGCTGGATGAGTGCACCAGCGCCGTCAGCATTGATGTAGAGGGTAAAATATTTCAGGCTGCAAAGGACGCCGGTATCTCCTTGTTGTCCATCACCCACAGACCCTCTCTATGGAAATACCACACGCACCTGCTGCAGTTCGACGGGGAGGGCGGCTGGAGGTTCGAGCAGCTGGATACGGCCACGCGGCTCTCATTGACGGAGGAAAAACAACGCTTGGAGTCTCAGCTCGCAGGAATCCCCAAGATGCAGCTCAGACTGAATGAACTGTGTAAGATCCTGGGCGAAGATTCGGTTCTAAAGACGGCGGAGAACAAAGACGAGGACTGAAAGAAACCTGGAGATGCTTGATGTTCAGGAATACTTTTGGTACTTTTAATGGTTTAGCAATGATtttaactagtgctgtcaacTATCAATCGCCatgaattgcatccaaaataaaagtttttgtttatgttatatatatata

Function

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005524 ATP binding molecular_function
GO:0042626 ATPase-coupled transmembrane transporter activity molecular_function

KEGG:

id description
K05675 ABCD1, ALD; ATP-binding cassette, subfamily D (ALD), member 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU42390 lncRNA downstream 736482 13994018 ~ 14074526 (-) True G28597
TU42391 lncRNA downstream 736482 14050599 ~ 14074526 (-) False G28597
XR_006250560.1 lncRNA downstream 740603 14068087 ~ 14070405 (-) True LOC122342415
TU42387 lncRNA downstream 818206 13992051 ~ 13992802 (-) True G28594
TU42368 lncRNA downstream 829844 13980790 ~ 13981164 (-) True G28577
XR_006250623.1 lncRNA upstream 1112 14823773 ~ 14825837 (-) False LOC122342647
TU42586 lncRNA upstream 180488 15003149 ~ 15003429 (-) True G28738
XR_006250554.1 lncRNA upstream 195124 15017785 ~ 15023863 (-) True LOC122342397
TU42674 lncRNA upstream 387023 15209684 ~ 15213451 (-) True G28789
TU42788 lncRNA upstream 594195 15416856 ~ 15418238 (-) True G28850
XM_043236612.1 mRNA downstream 297 14808543 ~ 14810711 (-) True LOC122342642
XM_043236609.1 mRNA downstream 85801 14704793 ~ 14725207 (-) True LOC122342640
XM_043236610.1 mRNA downstream 85801 14706280 ~ 14725207 (-) False LOC122342640
XM_043237009.1 mRNA downstream 106386 14687873 ~ 14704622 (-) True LOC122342862
XM_043236917.1 mRNA downstream 634266 14155492 ~ 14176742 (-) True cerk
XM_043236616.1 mRNA upstream 3606 14826267 ~ 14847177 (-) True LOC122342646
XM_043237012.1 mRNA upstream 202723 15025384 ~ 15027663 (-) False LOC122342864
XM_043237810.1 mRNA upstream 301384 15124045 ~ 15136539 (-) False brd1a
XM_043237809.1 mRNA upstream 301384 15124045 ~ 15136539 (-) False brd1a
XM_043237808.1 mRNA upstream 301384 15124045 ~ 15136537 (-) False brd1a
TU42549 other downstream 871 14808597 ~ 14810137 (-) False LOC122342642
TU42539 other downstream 113822 14695860 ~ 14697186 (-) False LOC122342862
TU42429 other downstream 634283 14169422 ~ 14176725 (-) False cerk
TU42363 other downstream 830449 13975357 ~ 13980559 (-) True G28575
XR_006250741.1 other downstream 979157 13815574 ~ 13831851 (-) True LOC122343280
TU42583 other upstream 201926 15024587 ~ 15027618 (-) True LOC122342864
TU42581 other upstream 203449 15026110 ~ 15027618 (-) False LOC122342864
XR_006250613.1 other upstream 778779 15601440 ~ 15611575 (-) False kiaa0930
XR_006250809.1 other upstream 1024308 15846969 ~ 15847087 (-) True LOC122343609
XR_006250818.1 other upstream 1034723 15857384 ~ 15857502 (-) True LOC122343689

Expression Profile