RNA id: XM_043236616.1


Basic Information

Item Value
RNA id XM_043236616.1
length 2926
RNA type mRNA
GC content 0.47
exon number 17
gene id LOC122342646
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 14826267 ~ 14847177 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CCGACGTCACTCCTCCAGTATTGTCAAACCCCAGACACAGTGAGCGGGTAAATACTTCCTCAAACACGGCGCGCCGCTCATTCTGCTCTCAACTTACACAGGGGTAGTGAGAATAAGACACGAACTACCGAAACCTCTCGGACTTTGAAGTCGGCAGAGTGACATCTCAACATGGCTCCGTTCCTGCGGATTGCCTTCAATGATTTTCAACTGGGAGAACTACCCCCTATGACAGAGCAACCATTCTGTGCCATCAAGATGAAGGAATCCCTCAGCACAGAGCGAGGGAAGACACTGGTCCAGAGGAAGCCTACGATGTACCCTGCGTGGAAATCCACATTTGACGCACACATCTACGAAGGTCGTGTCATACAGGTGGTACTGATGAAAACGGCAGAAGAGGCTTTGTCGGAGGCAACAGTTGGGGTCTCTGTCATTGCTGAGCGCTGCAAAAAGGGAAATGGCCGCGCTGAGTTTTGGGTCGACCTGCAGCCTTCTGGGAAGGTGATGATGTCTGTCCAGTTCTTCGTAGAGGGTTCTGACTTAGAATCAAAGTCCTCAATGACTGTGAAAGAGGACGACGGCATTCTCACAATAAACAGGAGGAGAGGAGCCATCAAACAGGCCAAAGTTCACTTTATCAAGAACCACGAGTTCACAGCCACCTTCTTCAAACAGCCCACCTTCTGCTCGGTCTGCAGGGAGTTTGTTTGGGGTCTCAACAAGCAGGGCTACAAATGTAGGCAGTGCAATGCGGCCATTCACAAGAAGTGCATTGATAAGATCATTGGGAGATGCACAGGGACAGCAACCAACAGTCGAGATACAGTGTTTCAGAAGGAGCGCTTTAAGATTGACATGCCACATCGCTTCAAGACCCATAACTACATGAGCCCGACTTTCTGTGATCACTGTGGGAGTCTGCTGTGGGGAATGGTTAAACAAGGCCTCAAGTGTGAAGaGTGCGGCATGAACGTTCACCATAAATGTCAGAGGAAAGTAGCAAACCTTTGTGGCGTCAACCAGAAGCTAATGGCAGAAGCCCTGGCTATGATTGAGAGCACTCAACAGCAGGCTCGCAGCTCTCGGGATACTGAGATTGCTGGTCGAGAGGGTCCAGTGGGCGTAAGTCAAGCAGGGGTCACTAGAGAGCCTTCGGGCCGCTTACCAATATCACCCCTCACGCCTGCACCGCCTCTACCACGCAAAGAGAATCAAGGTATTTCATGGGACACTCCGGCTGAGGGCCGCAGGCCAAGTCTGGAACAGCCTGAACCCCTGTATGCCACCCCACGCAAAGAGCACCAAAAGTTCAACCTAGATAATTTTAATCTGCATAAGATGCTGGGCAAGGGCAGCTTTGGAAAGGTGTTCCTGGCTGAGCTGAAAGGCACGGGGCAGTTCTTTGCAGTGAAGGCCCTGAAGAAAGATGTAGTACTAATGGATGATGATGTTGAATGCACTATGGTGGAGAGGAGAGTGCTGTCTCTGGCCTGGGAACACCCCTTCCTCACGCATCTCTACTGCACCTTCCAGACCAAGGAAAATCTTTTCTTCGTGATGGAGTACTTAAATGGGGGCGACTTAATGTTCCACATCCNACATTTTAAAAGCCTGTTCTACGCGGCCGAGATCGTTTGTGGGCTGCAGTTTCTACATTCTAAAGGCATCGTGTACAGAGATCTCAAGCTGGATAACATCTTGCTAGACATCGATGGTCACATCAAGATCGCAGACTTTGGCATGTGCAAAGAGAACATGTTTGGAGAATCTAGAACGTGTACCTTCTGTGGAACACCAGACTACATCGCTCCCGAGATTCTGCTTGGGCAGAAGTATGGGACGTCTGTAGACTGGTGGTCATTCGGCGTCCTCCTTTACGAGATGTTGATTGGCCAGTCTCCATTTCACGGCCATGACGAGGAAGAGCTGTTTCAGTCGATTCGCACAGATGACCCCTGCTACCCACGCTGGTTAACTAGAGATGCACGGGACATCCTTGTAAAGCTATTTGTCCGCGAACCTGAACGAAGGCTGGGCGTGAAAGGAAACATACGACAGCATGCGTTCTTCAGAGACATGGACTGGAGCGCACTAGAGAAACGACAGGTGGAGCCGCCCTTCAGGCCTACTGTGAAATCAGCAAGCGACTGCAGTAATTTCGATAAGGAGTTCATAAACGAGAAGCCTCGGCTTTCCGTCACAGACTGTATAATGATCAACAGTGTGGACCAGACCATGTTCAACAACTTCTCCTTCATCAACCCCGCTATGAGCCGTCTCAAGAGCCCCTGACACGCAGACGAACGGACACTCGTGCAAATACTGTGAAAAAGTCTGAACTAATAGGCAAACACTCACCTGAATAACATATCGGCCTCTAGTCGACCTCGTTTAATGCTATATTTCGTTTTTATGACGTACTTGCCTTTTTGtgaagtaaaatgcaaaaaaacattaacagcaaaagtttcaaaaacatttttttcccttcttcaATCCTCAATCAACTAAATCATTGATTCCTTCCCTGAATCAATCATTTGTGAACGTATTGAACTGAACGGGGCTCGTTTAAATTGTATAACAGAAAAATCCCCACCGCTGCTTAAATACACAGACTGTCTGGAAATGTAGAATTGTAAGAGATGTACGTATTTGACGATGGTGTTGAATTATTAAGCCATATACTTGCGTTTCGTGAAATTTGCTGTGCGTTTTAGTGGAATGAATATGCTGTGATGTATACATAATGAATTCTGTAGGCCTTGTATAGAGTGTTGTgaatgatggaaaaaaaaaattaactacttTAAGTTGCTTCTCAGTTAGGTTCTATGCTCTTAGATTGTACAAAGTTACATGAATTCTTGGAGGTTAACGTGTGGttctttattacaaaatgaTGTTGTTTTCTGTATAGTAA

Function

GO: NA

KEGG:

id description
K06068 PRKCD; novel protein kinase C delta type

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU42554 lncRNA downstream 429 14811440 ~ 14825838 (-) True LOC122342647
XR_006250623.1 lncRNA downstream 430 14823773 ~ 14825837 (-) False LOC122342647
TU42390 lncRNA downstream 751741 13994018 ~ 14074526 (-) True G28597
TU42391 lncRNA downstream 751741 14050599 ~ 14074526 (-) False G28597
XR_006250560.1 lncRNA downstream 755862 14068087 ~ 14070405 (-) True LOC122342415
TU42586 lncRNA upstream 155972 15003149 ~ 15003429 (-) True G28738
XR_006250554.1 lncRNA upstream 170608 15017785 ~ 15023863 (-) True LOC122342397
TU42674 lncRNA upstream 362507 15209684 ~ 15213451 (-) True G28789
TU42788 lncRNA upstream 569679 15416856 ~ 15418238 (-) True G28850
XR_006250641.1 lncRNA upstream 596587 15443764 ~ 15445229 (-) True LOC122342747
XM_043236615.1 mRNA downstream 3606 14811008 ~ 14822661 (-) True LOC122342645
XM_043236614.1 mRNA downstream 3606 14811008 ~ 14822661 (-) False LOC122342645
XM_043236612.1 mRNA downstream 15556 14808543 ~ 14810711 (-) True LOC122342642
XM_043236609.1 mRNA downstream 101060 14704793 ~ 14725207 (-) True LOC122342640
XM_043236610.1 mRNA downstream 101060 14706280 ~ 14725207 (-) False LOC122342640
XM_043237012.1 mRNA upstream 178207 15025384 ~ 15027663 (-) False LOC122342864
XM_043237810.1 mRNA upstream 276868 15124045 ~ 15136539 (-) False brd1a
XM_043237809.1 mRNA upstream 276868 15124045 ~ 15136539 (-) False brd1a
XM_043237808.1 mRNA upstream 276868 15124045 ~ 15136537 (-) False brd1a
XM_043237807.1 mRNA upstream 276868 15124045 ~ 15136536 (-) True brd1a
TU42549 other downstream 16130 14808597 ~ 14810137 (-) False LOC122342642
TU42539 other downstream 129081 14695860 ~ 14697186 (-) False LOC122342862
TU42429 other downstream 649542 14169422 ~ 14176725 (-) False cerk
TU42363 other downstream 845708 13975357 ~ 13980559 (-) True G28575
XR_006250741.1 other downstream 994416 13815574 ~ 13831851 (-) True LOC122343280
TU42583 other upstream 177410 15024587 ~ 15027618 (-) True LOC122342864
TU42581 other upstream 178933 15026110 ~ 15027618 (-) False LOC122342864
XR_006250613.1 other upstream 754263 15601440 ~ 15611575 (-) False kiaa0930
XR_006250809.1 other upstream 999792 15846969 ~ 15847087 (-) True LOC122343609
XR_006250818.1 other upstream 1010207 15857384 ~ 15857502 (-) True LOC122343689

Expression Profile