RNA id: XM_043236619.1


Basic Information

Item Value
RNA id XM_043236619.1
length 7883
RNA type mRNA
GC content 0.47
exon number 37
gene id LOC122342649
representative False

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 7225509 ~ 7318055 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

tcCCTCTGGTCAGTCGGGGCAGGTCCAGATGAGTCCCGTGTCCTCATCCATCAGCTGTGGGGACTTTTACTTCACCGGCTTTCCTTCAAAACTCACACAGGTACCCCTGAACACCCACACTTCACCCGCACCTGGCGGCTTATCTAAAGCTCAGCCTACAGGGCGTGGAAAAGCCAGGAATTGTTTTCGACGCTGGATCGCCAGCATCGCCCATACTTCTTCGGATTTCCCCGACAAAGTGTCCTGCCTCCCCGGCTTTTCGCAAGGAATACTCTTATTTTTCTCCCCGCTCCGGCGACCCACTCGGAAGACGGATAATGTGAAGCCCCGACCGGCAGTTTCCGAGCGGAAATCTTGATCAGCCGTCGCGAGTTGCGTCTCGGAAAGTGTTTCTACAGCAGCACTCAAGAGGATCAGAGGAAACAAAAGAGGCGGAGGAGggcagagagagggggaaagtcaaaagtaagtggcgaAGATGGCGAGGAGGGCCCTGGCAGTGTTGTCCCTGCTGCTGTGTTTCAGCTCATCTTGCTGTGATGATACTCAAGATTATTTCTTGTCTGATACTGTCATCAACAATGTCGTTCAGGACCCTCAAACCGGCCGAATTTACGTGGGTGCCATTAATAACATCTATCAGCTCAGCTATGACCTGGTGAAGGAGAACAGTGCTGTAACAGGCCCTAAGAGGGACAACCCACAATGCACTCCACCGATCACTGCACAGTGCACAGACACAAGGGATATGGACAACATCAACAAACTCTTACTGGTAAACTCCGCCAATGGCACTTTGATCGTTTGTGGAAGCCTTTTCAGGGGCATCTGCTCTTTGGTAAACCTCAACAGCGTGGACAAACAGGTGTACTACAGTGACATTAAAGGCGAGAAGACATACGTAGCAAGCACAGAGGAGTCTGTTGCTGTTGTGGGAGTAATTTCTTACTTGGaagttaataataatgcaaaccTCAGCATATTTGTAGTTGGGAAGGGCTACGGTACCTCTGACAGTTCGAAACTCATCAGCACTCGATTGCTGCAGGAGCATGGAGAAATGGATGTCTTTGAGAACATAGTTGACGCTTCCACTGTGCAAGCTAGTGCTTATGCCCAGCGCTACCTCCACGACTTTCGCCATGCTTTCAAAGACAACGGCTTCATCTACTTCTTGTTCTCTCGCACTCCGGGTACCAGCGACAGCAGGAAGATCACCTTTATAGCACGTCTGTGCGAGAATGACCATCATTACTATTCTTACACCGAGCTCCAGCTCAACTGCTCCATCAACACTGAACAACACGAAAACACGTATAACAAGGTCCAAGCTGCTTATCTGACCAGACCAGGTGAAGTTTTGGCTGGGAAGATCATCCCTTCAAATCCCAACGATAAGGTTCTGTTTGCGGTCTTCAGCGCAGATGATGATGGTGGTCGTTCGGCTTTGTGCATGTACCCGCTCAGCAGCATTAACGCTAGACTTGAGGAGGTGATTGAGTCCTGCTACATAGGAGAAGTTCTGGAGGACGAGAAACCAAAGACTGTTTATTCACCCTACACCTCCAAGGCCGAGTCCATCTGCAAGACCAAGAGAGACAAGACTATGGTGAAGGATTATAAATGTGGTGCAGAGTTCCTGCCGTCTCCACTAGCCAGTAAACCTGAGTACGCTCTGGCTGTCAAACCCATCTACACCCGAAATGACATGTTGACAGCTGTAGCTGTGGCTGTGGAGAATAAGCACACTGTGGCATTTTTGGGAACCAGTGGAGCAGATGTCTTAAAGGTGCATCTTGACCCCAGTCACTCTGATCTTTATAACAAGATTCCAGGGGAACGCACAGATGGTGGGGTGAACAAAAACCTCTTTTTTAATTCAACTTTGGATGTCTTGTACATCACCACTGGCAGAAAGATCACCAAAGTGCCAGTGCAGGCCTGTGAGGAGAAGAATGATTGTCAATCATGTATCTCCCAGCGGGACCCGTATTGTGGCTGGTGTGTGTTGCAAGGCCGTTGCACTAGGAAAAAGGATTGTCACAGAGGAGAAGTAGAGAACGCCTGGTTGTGGAGTCCAAAACAAACATGTCTAACAATTCAGTCCTTCGAACCCCCCAACATCAGCTGCAAGAAAACTGAGCGTACACAGGTGAAGATTGACATCCCCTCCCTTCCGAGTATCAGCAGCCCTGATATACAATATAACTGTGAGTTTGATGGCTACAAAAGTTACGCAACTATGGCAGGCACGCAGGTCACCTGTGACCTCCCGACCTCTGAGAACATTCCTCCCACACCTGAGACACAAGATTTTGTGGCAGTGCCAGTGAAGATCACGGTAAATGAAGGCATTGAAGTGGCATCTAGTGCGTTTGAGTTCTACAATTGTGCAGCAGTGGTGAAGAGATCGGAGAATACACCATGCATTGCGTGTGTGACCAGTAAGTGGGGCTGTCAGTGGAACATTCAGGATCACACATGCAGTGATAAAGATGACACCATCAAGGGGGATCATATCATACAACACTTGCAGGATGACACGTGTCCTCAGTTTGAGATTTCACAACCTCTGCTTATTCCCGTTGGATTTAAAACCGCCATTGAATTTCAGGGCAAAAATCTGGAGAAATTAGGGAGCAAAACCTTTCAGATCGGCACCGAGCTCATGAAACAGGTGGGCGAGGTGACTGTGAAGGCTGATGGGTCAAAGTACAGATTTGAGGGATATGAGTTTGAATATGACAAAGAGCCAGAGGTGAATGTGACGTTCTACATAAAGGATAAAGGCACGAACAGGAAGATTGACAGCACCCTCAgagtGGTGCTCTACAACTGTTCGGTTAGACGCGAGGACTGCAGTCTGTGTAAGAACGCCGATCAGAAGTATAACTGTGTGTGGTGCGACTCGACGAAATCCTGCATCTACAGAGACCTGTGCCGCTGGGAGCTGAAGCATTGTCCTGCTCCAAAGATCACTGACATTGTTCCCCGGTATGGGCCAATGAAGGGACAGATCTCTGTCACAATAAAAGGCTCGAATTTGGGCATCACGAAGAAGgacattaaaaatatcatcGTGGCTGGAGTGCCATGTGTTCATCAGGAGGAGAAATACTCCGTCAGTACCAGtGTTGTGTGTAAGATCGGGGCTGTCCCATCAGCATCTACTGAACCCAAATCCGGACCGGTGGAAGTGGAGGTGGAAGGAGGGAGGAAAGGACAGTCTTACTTGAATTTCACTTACAGGaatccTGTACCGAAGAACGTGTTCCCATCCACAGGCCCAGCCGCTGGGGGAACCGTCATCACCATCACGGGAGAAAACTTAAACACGGCTAGCATAGGTGACATCAGCGTCACAGTGGACAAGGAGCCATGTAAAGTGCTGACATTTGGCCGGAATATCACCTGCATGACAGGCCCATATAAAGGACAGAAGATTCCTTCCGATTGGTTGCCCGTTATTGTACAATATGGCAAGGACACATCCACAACTGTCAGCGGATTCGAATACTCAGCCAATCCCAAAGTTACAGATTACACCCCACGGGCCAGCTTTGTTTGcggaggtcgtaaAATCCGAGTGATGGGATCTGGATTTGAACAGGTGCAGAGAGCCACCATGCGAGTGCTGCCCTCTTCTGACGAGTTCAATCACGGGTTTAGCAACGAAGAGTTTGTTCAAGTAGTCGGCTTAAGGAACGACAGCGTGCTGGAGTTCAACTCTCCCGCTGTGAACAGCACATTAATAAACCTGTCTTTGAGGACGATCATCCAGCTAGACAACTTGGTGGAGAACTTAACAGAGTTCGTTTACCATCAAGACCCCTCGTTCGTTCCTTTGACCGATAAAGCCATCACGGAAAACAGCATCATCAACGTTAatGGTAAAGGTTTTTCCAAAGCCATGACTGCCAAAGAGGCCAAGGCGTTTGTGGGTAATGCGCAATGCACGGTGACAATCCTGGAGGACGATAAGCTGTTCCTGGTGGCCCCCCCCAGCCCTCCTGAATCTACCTCCAGACGCCAGCGTAGAGACACCAGCTCAGAGGCTATGGAGCTGACGATCATATTCGGCAACGGAGAGTGGAACGTCGGCTCTGTTCGCTTCGAGAGGAAGTACGAGGTTCCTCTTTACATCATCATTCCCGCCGTCCTCATTCCCATGGTCCTCTTCATTGCAGTGTCGATCTATTGCTACAGGAGGAAAAGCCAGCAGGCAGAACGAGAGTATgagaaaatcaaaaatcaacTTGCCAATTTAGAAGAGAGCGTCCGTGATCGCTGTAAAAAAGAGTTCACAGATCTTATGATAGAGATGGAGGACCACACTAGTGATCTGAATGAAGCTCGAATCCCATTCCTGGACTACAAGAACTACACAAACCGCGTTTTCTTCCTACCCTCCGAAGATGGAGCCAACGATGTCATGATCACTGGCAAGCTGGACATCCCAGAATTCCGCAGAGCAATTGTAGACCAAGCCCTCAACCAATTCTCCAATCTCCTGAACAGCAAAACCTTTCTCATCAACTTCATTCGTACCCTGGAGGGCAGGCAAGAGTTCAATGCCAGGAATAAGGTTTACTTTGCTTCCTTGTTGACGGTGGCGCTCCATGGAAAGCTGGAGTACTACACAGACATCATGAGAACCCTCCTCCTGGAGCTGATGGAGGAATACATCCACAGCAAGAACCCTAAACTCATGCTCCGCAGGTCCGATACCGTTGTGGAGAGGATGTTGTGTAACTGGATGTCCATATGTCTCTACCAGTTCCTAAAGGACTCAGCCGGGGAGCCCCTCTATAAGCTCTTTAAGGCCATTAAACACCAGGTGGAAAAAGGTCCAGTTGATGCCAAGATGAAAAAAGCCAAATACACTCTGAACGACACCGGACTTCTGGGAGATGATGTTGAATACTCTGTTTTGACCCTACAGGTGTTGGTTCACGGCGAGGGTCCCGACGTGACCCCTGTCAAAGTCCTGAACTGCGACACCATCTCCCAAGTGAAGGAGAAGATCATCGAGCAGGTGTACAGGAATCTGCCCTACTCCCAGAGACCCACTGTGGACAGCGTCGCACTCGAGTGGCGCCCTGGCTCTACAGGGCAGATCCTGTCCGATCTGGATTTGACATCGCAGAAAGAGGGAAGGTGGAAACGAATCAACACACTGGCCCATTACAACGTGAGGGATTGTGCCACCCTGGTCTTGTCCCGAGTTCTGCACACCCAGCAGTCTTTTGACCAGAACCAAGACAACCATGAAGAAAGAAATGCTTTGCTGGAGGACGATAAGGTATTTCACCTGGTGAGACCGGCAGATGAGCTGGAGGAAGTGAAATCAAAGAGAGGAAGCATGAAAGACAAGGCCACGACGAAAGCCATCACTGAGATTTACCTGACCAGACTCCTGTCTATGAAGGGAACGCTGCAGCAGTTTGTGGATGACTTCTTCCGCAGCGTGTTGTGTTCTGGGACCGTGGTTCCTCCCGCTGTCAAGTATTTCTTTGACTTCCTGGATGAACAAGCACAGAAACATGACAATGTTGATGATGAGACCATCCACATATGGAAGACCAACAGtctgcCTCTCCGGTTCTGGgtgaacattttgaaaaaccCTCACTTCATCTTTGACGTTCATGTGACTGAAGTGGTGGACGCCTCTCTGTCCGTCATCGCCCAGACCTTCATGGACGCCTGCACCAAGACCGAGCACAAACTGACCCGGGAGTCCCCCAGCAACAAACTGCTTTATGCAAAGGAAATCTCCACTTACAAGAAGATGGTTGATGATTATTACAAAGGTATCCGTCAGATGGTTCCAGTCAGTGACCAAGACATGAACACACACCTTGCAGAAATTTCACggTCTCACACAGATAAGTTGAATACCCAGGTTGCATTGCACCAGCTTTACCAGTATGCTAGCAAGTACTATGATGGGATCATCTCGTCGCTGGAGGATGACCCTGCCGCCCAGAGCAAACAGCTGACCCTCAGACTGCAGCAGATCGCCGCTGCGCTGGAGAATAAAGTGACCGATCTTTAGTGTCAAGGAGCCCAGACTCAAGAAAGCAGACGGAAGTGCCACTAAAACCAAGACAGAGCTCAATTTAATGGGCTCGAAAAATAGGAACAGCCCTTGTGGAGGACTCTGGTTGATGGAGCCTCCGCTCCGTGGAGTGAAAGATAAAGCGAGGAGGAACACAGACTAATTGCGGACCCTTCCTCTCCACGCGACTCTCTCAGCTTTTGATTCAGAGGGACCAACAGAATACGCTCTGACCTGAGGGGAACATAGCAGTGGAGCAGAACGAAATCTCACCGTGGTACTTCAGATCAGCACCTGCACAATGAAAGcccagcatttatttttgcgtTCTGCTATGCCAATAATCAGATGTTCGGTATATTCTTCCTGTGTAGATGAATTAAAATAGtgttatatgtaaatatatttttacactttagaCAGAGCAGATGGATTATTCTTTAGCCTACTATTTTGTTTTCCTGCGTGTTTTAAGTGCCGCCCTCATTCCTGTGCGGTgatgatgtcacatcctgtggGTTCTTTGACGCGCCATCGGCTCGCGGTTCAGTTTTTGGTACCGCTATCGGTTTGTGTAGGTGTTTGTGATGCTGACGTCCGAGCCGGTGCTCCTTTTGTCCCTCCCCaagtatttttaagtgtgttttatcGGTAATTGCGTACAGAAACGTCATCAAGTCAGATTCTAATTTAGCCAGAGCTCAAAAGAACGGGCCGCAGTCGTCGAGCGGCCGTCCGCGTCTCAGAAACACGGCGAAAGCGCATTTGATCCatgacacacagacactcagaACAAAGGCCACGGAAGCTTTTATCTCCCTTTGCTTTGGTGTCTGATCCAGCagttgcgtttttttttttgtttttgtttttgtttttgtttttgtaccatCTTTGCTTTTATATACGTGCACTTCGACACATGGCTTGCCTTATTTTATGACAGttatgattttgtatttttaaatcgaCGATATTTGATTTGCTTTGCTGGTTGCCTTTCTTGAGATATATTTAACACGCACGTATGGTAGAGGATCTCCTTGAATGTGACGATGAAATACGGACGATCGTGACTTTGCCTTAACAGCAATAGTATGGACTGAGAGCTACTCGTATGCCAATTAAATCATAGAGTTTCCATTTAGTTTATTGGTACTaaaattcttttcttttttaaaaaaaaaaagttatatatattttatttttattttttattattattttttttttttttagagcttACCAAAGTTTAAATAAATCGTTCGCAGCTGTTCGCAACCATCTTAAgcttgtgttgttttgtgtgtatcAGATGATCTAGTTTAAAGtgtaaattaatgaataaaaaagatatAACGGTATGGCAGCTGATGGTAAGTTTTTGTAAATGGTACGCTTTTCCTACCTGTATGTTCTGACTCGAACGTGCCAAACACTTCACACGCTTGATGACAAAAGGGTAATGAGGATTATACCGTTTCTTTACGAACTTGTGACTTGTGTTGCCTCGGTAGGCGGTGACGACGTTGCactgcagccaatcagaggctgGCACCGCCCCCATCCTGAGCATGATGGACACAGCAGGAAATGCCTTTGAACTGTAAATATAGCCCAACTGCCAAGATTTCATATTCTTCTCTGCTTTTTCCCGCTCTTCCTGCCAGTTCTTCTGTGGTGTCTAGCTATGACCGTGTAAATGGCTTATTGTAAAGCTTCTTGTTTGCCTTTCTTTACCAGGTAGTGCCTTACAGATATGAGTAATAATGATCAATTGTGTGGTGATTATGTCTGCATTAAAATTGCAATAGGGACCTTA

Function

GO:

id name namespace
GO:0002040 sprouting angiogenesis biological_process
GO:0007165 signal transduction biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU39779 lncRNA downstream 4598 7214334 ~ 7220911 (-) True si:dkey-261e22.4
XR_006250751.1 lncRNA downstream 35960 7166806 ~ 7189549 (-) True LOC122343305
TU39740 lncRNA downstream 269134 6883901 ~ 6956375 (-) True G26799
TU39736 lncRNA downstream 362127 6862723 ~ 6863382 (-) True G26796
TU39733 lncRNA downstream 363262 6860074 ~ 6862247 (-) True G26795
TU39780 lncRNA upstream 1447 7319502 ~ 7319725 (-) True G26832
TU39813 lncRNA upstream 55118 7373173 ~ 7373595 (-) True G26846
XR_006250789.1 lncRNA upstream 81611 7399666 ~ 7456641 (-) True LOC122343472
XR_006250790.1 lncRNA upstream 93270 7411325 ~ 7456641 (-) False LOC122343472
TU39864 lncRNA upstream 112039 7430094 ~ 7456598 (-) False LOC122343472
XM_043236379.1 mRNA downstream 4608 7214454 ~ 7220901 (-) False si:dkey-261e22.4
XM_043236378.1 mRNA downstream 4608 7214454 ~ 7220901 (-) False si:dkey-261e22.4
XM_043237904.1 mRNA downstream 67595 7119870 ~ 7157914 (-) True nell2b
XM_043237905.1 mRNA downstream 126256 7091568 ~ 7099253 (-) True twf1b
XM_043237883.1 mRNA downstream 134467 7085317 ~ 7091042 (-) False pus7l
XM_043237539.1 mRNA upstream 143059 7461114 ~ 7469813 (-) True akr1b1.2
XM_043237541.1 mRNA upstream 143059 7461114 ~ 7469766 (-) False akr1b1.2
XM_043237972.1 mRNA upstream 151864 7469919 ~ 7477407 (-) False prdm4
XM_043237971.1 mRNA upstream 151864 7469919 ~ 7477404 (-) True prdm4
XM_043236515.1 mRNA upstream 163294 7481349 ~ 7494492 (-) False slc26a5
TU39663 other downstream 485914 6737641 ~ 6739595 (-) False il22
TU39610 other downstream 864066 6350503 ~ 6361443 (-) True msrb3
TU39270 other downstream 1285510 5938055 ~ 5939999 (-) True mrps33
TU39262 other downstream 1311971 5909473 ~ 5913538 (-) True G26462
TU39180 other downstream 1372143 5850404 ~ 5853366 (-) True G26414
TU39958 other upstream 237060 7555115 ~ 7558453 (-) True G26951
TU40263 other upstream 929856 8247911 ~ 8249225 (-) False LOC122343432
TU40311 other upstream 1142451 8460506 ~ 8468028 (-) True G27232
XR_006250786.1 other upstream 1576129 8894184 ~ 8941271 (-) False LOC122343470
XR_006250788.1 other upstream 1577737 8895792 ~ 8941271 (-) False LOC122343470

Expression Profile