RNA id: XM_043236627.1


Basic Information

Item Value
RNA id XM_043236627.1
length 1436
RNA type mRNA
GC content 0.51
exon number 8
gene id LOC122342653
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 17483433 ~ 17490295 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGAACTTTGAAACAGAACATTAGGCTACAAACATTACAATAACATCTATACAGTGACATATGAAATAGAATTGTTTAGATAGAATAGAACAGTTTGGAGTCATGGTGATGAGATTCAGGGTTAATTTTAGTGTGATAGTGCTGTGCACGTTAGTTTCTCCATCATGTGAATGAAAACGGATCCTTAACAACTCTTCTTATTGTGGAGTTGTGACGAGTGCTCTATGGAGTTCCCAAAGCTGCCCCCTCACTCGGGCCCTGTGCTCTCAGTAGTGGACATGCACACAGGCGGAGAGCCGCTGCGCATTATCCTGAGCGGCTATCCAGAGGTGAAGGGCGACACCGTCCTTGCCAAACGACGCTACGTGAGAGAGCATCTCGATCACCTCCGCAAAGTGTTGATGTTGGAGCCGCGCGGCCACTACGATATGTACGGAGCCCTGCTGGTCCGAAGTGAGTTAGCAGAGGCTGATCTCGGCGTCTTGTTTATGCACAACGAAGGGTACAGCACCATGTGCGGCCACGCTGTCATTGCTCTCGGGCGCTTTGCGGTGGATTACGGCTTGATTAAAGCGCCCGCTTCACCGGAGACGCAGATAAACATACACTGCCCTTGTGGCTTAGTGAAGGCCTTCACACAGTATTCCAACGGGAGAACCGGAGCTGTCAGATTCCACAGTGTGCCAGCCTTCGCTTTCGCTACAGATGTGAGTGTCTCGGTACCGGGATATGGGTCCATTAATGTAGACATCAGTTATGGCGGAGCTCTTTATGCTTTTGTGAGTGCTGAGAAATTTGGATTAGATGTGAAGAAGTCCAAAACCAGAGATCTGGTGGATGCAGCCACTGCTGTGAGCGATGCTGTCAAATCCCAgGTAAAGCTGTACCATCCAGTCAGCGAGGATCTGGCCTTCCTCTACGGCACAATCCTTACTGACGGCAAAGATGCTTTTTCTGAAGAGCCCACagccaatgtgtgtgtgtttgctgatgCACAGGTGGACCGAAGCCCTACGGGGTCAGGCGTCACTGCTCGTATTGCTCTTCAGTACCATAAAGGCCTGATCGAACTCAACCAGACCAGACGTTTTGAGAGCGGAGCTACAGGATCAGTGTTTACAGGAAAAGCAATAGAGGAGACCACGTGTGGGGACTTCAGGGCTGTGGTAGTGGAGGTCGAAGGTCATGCTCACTACAGCGGCGTGGCCAGCTTCACCCAAGAGACCAATGATCCTCTGAGAGGAGGCTTTCTCCTGCGCTGACCTAACGCTTACAACTGATATTTCTGCTTCTGCTTGCAGACCTGAGCCTCCATTCGTGCCCTGCGCTCCTCCTCTTCTTTGCGTCGGCGCATGTTCTCGTTCTCTTGACGGGCCTCGGAGAAGGACTGCAAGAACTGGTCGAATATCCCAAAGAACTCATCAGGCTGCATCTTAT

Function

GO: NA

KEGG:

id description
K18384 L3HYPDH; trans-L-3-hydroxyproline dehydratase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU43253 lncRNA upstream 97753 17385289 ~ 17385680 (+) True G29200
TU43244 lncRNA upstream 188793 17294375 ~ 17294640 (+) True G29192
TU43233 lncRNA upstream 262817 17220257 ~ 17220616 (+) True G29181
TU43230 lncRNA upstream 263919 17219142 ~ 17219514 (+) True G29178
XR_006250626.1 lncRNA upstream 364327 17093963 ~ 17119106 (+) False LOC122342667
TU43359 lncRNA downstream 63538 17553833 ~ 17554190 (+) True G29272
XR_006250563.1 lncRNA downstream 176855 17667150 ~ 17669761 (+) True LOC122342426
XR_006250674.1 lncRNA downstream 219760 17710055 ~ 17711711 (+) True LOC122343158
TU43407 lncRNA downstream 247772 17738067 ~ 17739667 (+) True G29305
TU43408 lncRNA downstream 255233 17745528 ~ 17746317 (+) True G29306
XM_043237874.1 mRNA upstream 72581 17397135 ~ 17410852 (+) True esr2a
XM_043237875.1 mRNA upstream 72581 17397135 ~ 17410852 (+) False esr2a
XM_043237097.1 mRNA upstream 134563 17308293 ~ 17348870 (+) False jag2b
XM_043237095.1 mRNA upstream 134563 17308294 ~ 17348870 (+) True jag2b
XM_043237096.1 mRNA upstream 134563 17308294 ~ 17348870 (+) False jag2b
XM_043237592.1 mRNA downstream 75158 17565453 ~ 17578804 (+) True nmu
XM_043237591.1 mRNA downstream 75158 17565453 ~ 17578804 (+) False nmu
XM_043237590.1 mRNA downstream 75158 17565453 ~ 17578804 (+) False nmu
XM_043237593.1 mRNA downstream 75158 17565453 ~ 17578804 (+) False nmu
XM_043236808.1 mRNA downstream 91775 17582070 ~ 17630822 (+) True clocka
TU42966 other upstream 1009052 16473898 ~ 16474381 (+) True G28982
TU42861 other upstream 1497707 15985219 ~ 15985726 (+) True G28899
TU42853 other upstream 1641578 15841372 ~ 15841855 (+) True G28891
TU42722 other upstream 1828252 15650295 ~ 15655181 (+) True cdkn1d
TU42701 other upstream 1927751 15439334 ~ 15555682 (+) True G28806
TU43729 other downstream 810120 18300415 ~ 18301189 (+) True G29526
TU43756 other downstream 946165 18436460 ~ 18461317 (+) True G29545
TU43926 other downstream 1392884 18883179 ~ 18886402 (+) True G29642
TU44195 other downstream 1799925 19290220 ~ 19342911 (+) True G29814
TU44225 other downstream 2240967 19731262 ~ 19786128 (+) False G29835

Expression Profile