RNA id: XM_043236662.1


Basic Information

Item Value
RNA id XM_043236662.1
length 2763
RNA type mRNA
GC content 0.51
exon number 5
gene id gata3
representative False

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 13075216 ~ 13090835 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

gagagagagagagagagagagagagagggagggatggAAATAGAGTAAGAGGAAAGAGGGTTACTACTACTGCTGCGCATAAACACAGATTTGATCAAACTTGTGTTCGGTCAGAAGGCAGAAAACTTACCCAGATCGACCCCGGCTCGGCCCGAACTCACTTGTTGAGTCTACGCGACGCggcacagagagagaaaagaactTGCGGAACACGACGCGCGTTCGGACGCGTACGCGGGACTTATGAGCAACGTTAGTAGCATAAACGCGTTCGACTTTCGCACGTTAACGCGCGTTCGCTGCTGAACGGACGGATCCGGTTCGCGCGAGCTCCTGTCAGATGACAGAAAGAACGCGGGCGAACGGACGGACTTTGTAAAACCAAATTGTCTTGTTCAATTTCAGGTGATcggaagtaaagaaaaaaaaattggaaaccTGTGGATTAAGCGAAGGAGGagtttggacttttttttttgaactttcGCGTTTGTGCGTTTCGGTGAGTGTATGAAcgcttgttaaaaaaaacaacaaacaaacaaacaaaaaaaaaacaacgaaaaaaacaaaacaaaacgatgGAAGTAAGTTCGGAGCAGCCCCGTTGGATGACCCACCATCACCCGGTCATAAACGGCCAGCATCCCGAGACACACCACCCCGGACTGGGACACTCCTACATGGACCCGTCGCAGTATCCCCTCGCGGAAGATGTGGATGTATTGTTTAATATCGACGGACAGAGCAACCACCCGTACTACGGGAACTCGGTTCGGGCTGTGCAGAGGTACCCGCCGCCTCACGCAGGTACTCAGGTGTGTCGCCCATCGCTGCTGCACGGCTCTCTTCCTTGGCTCGACGGAAGTAAACCTATCGGCCCTCACCACAGTACCTCCCCCTGGAACCTCGGGCCTTTCCCCAAGACTTCCCTGCATCACAGTTCCCCCGGGCCTCTGTCCGTGTACCCCCcggcctcctcctcctcgctgtCCGCCGGACACTCCAGCCCGCACCTCTTCACCTTTCCCCCCACTCCACCCAAAGATGTGTCCCCCGACCCAGCGATTTCCACGTCAGGCTCGGGCTCGTCCGTACGGCAGGAAGACAAAGAGTGCATTAAGTACCAGGTGTCTCTGGCCGAAAGCATGAAGCTGGATTCGGCTCATAGTCGGAGCATGGCCTCTATCGGACCGGGCGCGTCCTCCGCGCACCACCCCATCGCCACTTACCCATCCTATGTGTCCGATTACGGGCCGGGGCTCTTCCCACCAAGTAGCCTGATAGGAAGAAGTGTTAGCTGCAAGAAATTGACTCGCCAAGCGCAGTCCGCTGCCAGACGAGCGGGGACCTCGTGCGCAAACTGTCAAACGACCACGACGACGCTGTGGCGGAGAAATGCGAATGGCGATCCCGTCTGCAACGCCTGCGGCCTCTATTACAAATTACACAATATCAACCGACCGCTCACCATGAAGAAAGAGGGCATCCAGACCCGGAACAGGAAGATGTCCAGCAAGTCCAAGAAGAGCAAAAAGTCCCATGACAGCATGGATGATTTCTCCAAAAGCTTGATGGAAAAGAACAGTTCTTTCAGCCCGGCCGCTCTGTCGCGTCACATGACCTCGTTCCCGCCCTTCTCGCACTCCGGCCACATGTTGACCACGCCCACCCCCATGCACCCCTCCTCCAGCTTGCCCTTCGCCCCTCACCACCCTTCCAGTATGGTGACGGCGATGGGCTAGAGCGCCCTTCTACCTCCGACCGCCCAATCTCCCGACGGTGGATGTCTCAAAGCACCGTTAACCTTGAAGCCTGTCACCCGCCGCAACCCTCCGACCTTGAACCAGCTCTCTCACACGCCCCCCCCCACACAACCCCAAGACCCCTTCTCCGGTATGTCCCGCTTTAACCCCTTTCCGACCCTATATAATGAGGGAGAGACAGTGAGAACGAAAGAGAAAAGACAATGACTTTCTTCATCGCCCCTCCAATCATGAAGCCCCGCTGATGTCAACCTTCATTTGTGTACAAATGCCATCTTTCCTGTGGGCATCAAAGGCACAAACATTACGAGACTTTAAACAGACCTCCTCTTAATTCCCCCGACCCGCTCCTTTTCTTCTTCTAACGCATCTCCTCTTCCCCTCCTTCCCCGTGAGACATGAGGAATCGAGCTGTGAATGACAACAGGAGATGAACTctgcatatatttgtaaaaaaaaaaaaattgtctgaaatacatttaatgaagactttttaaagcgcaaaatgaaaaaaaggcgAGGACAGGAAATGCCCGCGGGCAGCTAATGATAAGAAGGGTACGACTCAAACCTGGAAGATGGAACGGCGTGGCGACGCGGCCACGATTTCTATCCGAGAAAAGTAAGAGACGAGATGTAGGGAGAAGAAAAGTAGAAAGGAAATGGtgtgtaatgcattaaaacttgTAGTCAGGTCTGTCTCGCAGACTTCCAGCTACTCTTCTGGATGTGTTATAGGTCTTGGGCAATTGGtttgtgttcacacacacacacacacgcacacacacacacgcgcgcacacactcacGTATACACCTGAAAGACTTCTTTGGGCCCAGGTTATatgcattgtgaaaaaaaagttcctgtatttgttatttgtatgtataattcAGAGTACCAAAAATACGAAAGAAACAAAGATGTagaattatttctttatgtaaTGCAGACTGAATGGTTGTACAAATTTAATAATCACTAGTGTAAAAAAAGA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0060788 ectodermal placode formation biological_process
GO:0048702 embryonic neurocranium morphogenesis biological_process
GO:0021514 ventral spinal cord interneuron differentiation biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006250594.1 lncRNA downstream 3696 12988707 ~ 13071520 (-) True LOC122342546
XR_006250593.1 lncRNA downstream 3696 13022123 ~ 13071520 (-) False LOC122342546
TU41980 lncRNA downstream 4063 12988876 ~ 13071153 (-) False LOC122342546
TU41701 lncRNA downstream 806476 12265665 ~ 12268740 (-) True G28130
XR_006250651.1 lncRNA downstream 837079 12236645 ~ 12238137 (-) True LOC122342788
TU42001 lncRNA upstream 91402 13176961 ~ 13177984 (-) False tmem110l
TU42027 lncRNA upstream 142141 13227700 ~ 13227947 (-) True G28349
TU42028 lncRNA upstream 143535 13229094 ~ 13229319 (-) True G28350
TU42033 lncRNA upstream 156947 13242506 ~ 13245388 (-) True G28353
TU42039 lncRNA upstream 165092 13250651 ~ 13252034 (-) True G28359
XM_043236487.1 mRNA downstream 403745 12539057 ~ 12671471 (-) False celf2
XM_043236482.1 mRNA downstream 451816 12539057 ~ 12623400 (-) False celf2
XM_043236504.1 mRNA downstream 451816 12539057 ~ 12623400 (-) False celf2
XM_043236481.1 mRNA downstream 451816 12539057 ~ 12623400 (-) False celf2
XM_043236496.1 mRNA downstream 451817 12539057 ~ 12623399 (-) False celf2
XM_043237675.1 mRNA upstream 16756 13102315 ~ 13144908 (-) True taf3
XM_043236346.1 mRNA upstream 61095 13146654 ~ 13150706 (-) False atp5f1c
XM_043236345.1 mRNA upstream 61095 13146654 ~ 13150706 (-) True atp5f1c
XM_043236347.1 mRNA upstream 62391 13147950 ~ 13150706 (-) False atp5f1c
XM_043236342.1 mRNA upstream 66862 13152421 ~ 13164123 (-) False itih2
TU41785 other downstream 586060 12481920 ~ 12489156 (-) False cpm
TU41786 other downstream 586060 12482102 ~ 12489156 (-) False cpm
TU41650 other downstream 1059449 12014631 ~ 12015767 (-) True G28093
XR_006250735.1 other downstream 1529404 11426497 ~ 11545812 (-) False ppfia2
TU41528 other downstream 1651133 11422069 ~ 11424083 (-) False ppfia2
XR_006250598.1 other upstream 231373 13316932 ~ 13361938 (-) False tmcc3
XR_006250597.1 other upstream 231373 13316932 ~ 13361938 (-) False tmcc3
XR_006250596.1 other upstream 238966 13324525 ~ 13361938 (-) False tmcc3
TU42098 other upstream 326065 13411624 ~ 13422539 (-) False G28397
XR_006250767.1 other upstream 607386 13692945 ~ 13698715 (-) False LOC122343399

Expression Profile