RNA id: XM_043236665.1


Basic Information

Item Value
RNA id XM_043236665.1
length 2726
RNA type mRNA
GC content 0.48
exon number 4
gene id btbd6b
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 17138065 ~ 17143280 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AAGAGAGGGGCTGGCTGAGGGAGGCGCCTCTGGGCCACTGACGTCCGAGTCACTCGTAGTTTGATTTGTCAACAGAGAGCTGGGCGTCCTCGGCCGTCACACAAAACGGGCTTTACGGTACAGAGTAGATGAGCTTGAGAGGGGATGCACCACAGATATGTGTAGGATGACAAGGACCGAGTAGCATTTTCCGTGGTCGACTCTAAATTTATTTAACCGACCGTGGCGCTTGGCTTTACTCGCGCCGTGTTATTTTCACTTGCAATAAAGTCGCGAATGGGCTCGAGATCAAGGATCGCGAGGATGCgatgagaaagaggaaaaaaagtctTCGAGCTGGAATATTTCCGCCGGATGGATTCACTGATGCAGTTTCGCAAATGCGTTGAAAATGGGGGGGAAACCGCAACGGAAGCGCGTGTGTTTTTGAGTAGCCGAGGCTTGTAGTTTGCAGTTAAATTAAAGGAGCCGTTTTTCCCCGCTACACCTGCCTTTTAATTACTCCGCAGACTGGTGGATAGACTCGCTGATGCCAACAACGCCAGATTGCCTATATGGCAGGATCATGAAGTTTTTGACGTTTTTCCTTTTGCTTCCAGAAACCTTAAAGAGGACTAGAAAGAGTGGGAAACAGCTCAGCAAGCTGCCAGTATGCTATGAAATCGTGACTTTGTCCTTGAGGAAGAAGATGGCTGCAGAACTCTATCCTGCCAGCATAAACACCAACCTTCCGAACGGTAACGGCACAGCGGTTACATCTGCCAGCAAAAAGAGCATCGTCCAAGTCACTCAAACGGTGACGACGCCGACTACAACTGCCACTCAGCAGAACATCAACAATAATAACGTCGAGACCGCCAGCTGGCAGTCCACTCACCCGACGCTGCGAGAGAGGAATGCTTTGATGTTCAATAACGAACTCATGGCAGATGTTCATTTCGTTGTGGGTCCGCCTGGCGCATCCCAAAAAGTTCCAGCGCACAAGTATGTGCTGGCGGTGGGGAGTTCTGTTTTTGGTGCCATGTTTTACGGAGATCTAGCGGAAGGAGAATCTGAGATTCACATTCCTGACGTGGAGCctgctgcttttttaattctTCTTAAGTACATGTACAGTGATGAGATTGAACTTGAAGCGGACACAGTGCTGGCCACTCTGTACGCTGCCAAAAAGTATATAGTGCCTGCACTGGCTAAAGCCTGTGTCACCTTTCTGGAGACTAGCCTGGAGGCCAAAAATGCCTGTGTGTTGTTGTCCCAGAGCCGACTGTTCGAGGAGCCTGAGCTGACCCAGCGGTGTTGGGAGGTCATTGATGCTCAGGCCGAGCTGGCGCTTCGCTCTGAGGGTTTCTGTGAGATTGATCTTCAAACGCTGGAGATCATACTAAAGCGAGAGACTCTAAACACCAGAGAGGCGGTGGTCTTCCAGGCAGCTCTCGATTGGGCTGTGGCTGAATGCAAAAGGCAGGGACTGGGACCAACCTCTCGTAATAAAAGGGCAGTACTGGGCAAGGCTCTCTACTTGGTTCGTATCCCAACCATGACCCTGGAGGAGTTCGCCAATGGGGCCGCACAGTCAGACGTTTTAACTCTGGAAGAGACTCATGATGTCTTCCTGTGGTACACGGCAGCCAATAAGCCCAAGCTGGAATTCCCGATGCAGAAAAGAAAGGGTCTGACGCCACAGCGCTGCCATCGTTTCCAGTCCTCGGCTTACCGTAGTAACCAGTGGCGCTACCGCGGACGTTGTGATAGCATTCAGTTTGCGGTGGATAAGAGGATCTTCATCGCAGGGCTCGGCTTGTACGGTTCCAGCGGTGGAAAGGCAGAGTATAGCGTCAAGATTGAACTCAAGCGCCAAGGTGTGACCCTGGCCCAGAACCTAACAAAATTTGTTTCAGATGGATCCAGCAACACCTTCTCGGTATGGTTTGAACACCCAGTCCAAGTGGAGCAGGACACCTTCTACACAGTCAGTGCCGTATTGGATGGGAACGAACTAAGCTACTTCGGACAGGAGGGTATGACGGAAGTGCAATGTGGAAAGGTGACCTTCCAGTTCCAGTGTTCCTCAGACAGTACTAACGGAACGGGAGTACAGGGGGGTCAGATCCCAGAGCTGGTCTTCTATGCCTAAAATTGTCCGTATTACAGTGCATTCCACTCACTGGAATTAGGAGGGATTGAATACAGGGTCTTGTGAGGCTCTAGCCTTTATTATGTAGCAGATGGTAATGGCGCTTCAGAACCACAGCGGACTCAGATGGAAGGAATGttcttcagctttatttattgcaaaaattatatatttgatttaattattgacACTGCAGCAAGCAGATCtctatacagtgtgtgtgtgtgtgtgtgtgtgtgtgtatgtataatatacacGCACATAAATGAAGATAGTTGTACTGCTCTGATAGTGGACGGAAGCCACTAGTGTGTCATGTTTTGtacataaattatttgttttcagcTTGATGCTGactgacaaataaaatgtcttgtATTAGTGATCAGCTTCCTGAACTTcagattataaatgtttttgtgactcaaatacaaagttgtttttacttattCATGACATGCATAAACAATTATGCTATTCTGCTCAATCCTGATTTTAGTAATGAAGAGAGGTTGAACTAAATCTATATTTTCAATGCCCTAAAAGTGTATGGtatatacactaaaataaaatactttgaaTGAGGTAA

Function

GO:

id name namespace
GO:0030154 cell differentiation biological_process
GO:0007399 nervous system development biological_process
GO:0000932 P-body cellular_component

KEGG:

id description
K10478 BTBD3_6; BTB/POZ domain-containing protein 3/6

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU43183 lncRNA downstream 97231 17038827 ~ 17040834 (-) True G29143
TU43160 lncRNA downstream 111726 16955455 ~ 17026339 (-) False G29127
TU43163 lncRNA downstream 111726 16955455 ~ 17026339 (-) True G29127
XR_006250656.1 lncRNA downstream 213100 16908209 ~ 16924965 (-) False LOC122342882
TU43231 lncRNA upstream 77349 17219151 ~ 17219453 (-) True G29179
TU43271 lncRNA upstream 207487 17349289 ~ 17349506 (-) True G29212
TU43360 lncRNA upstream 411960 17553762 ~ 17553964 (-) True G29273
TU43543 lncRNA upstream 500577 17642379 ~ 17642637 (-) True G29388
TU43565 lncRNA upstream 557622 17699424 ~ 17701373 (-) True G29408
XM_043236664.1 mRNA downstream 7800 17123907 ~ 17130265 (-) True LOC122342663
XM_043236669.1 mRNA downstream 15948 17118343 ~ 17122117 (-) False xrcc3
XM_043236668.1 mRNA downstream 15949 17118343 ~ 17122116 (-) False xrcc3
XM_043238042.1 mRNA downstream 48565 17085462 ~ 17089500 (-) True ckbb
XM_043237873.1 mRNA upstream 269216 17411018 ~ 17482755 (-) False LOC122343418
XM_043237872.1 mRNA upstream 269216 17411018 ~ 17482755 (-) False LOC122343418
XM_043237865.1 mRNA upstream 269216 17411018 ~ 17482755 (-) False LOC122343418
XM_043237871.1 mRNA upstream 269216 17411018 ~ 17480387 (-) False LOC122343418
XM_043237867.1 mRNA upstream 269216 17411018 ~ 17480387 (-) False LOC122343418
TU43209 other downstream 15936 17118628 ~ 17122129 (-) True xrcc3
TU43174 other downstream 120242 17006927 ~ 17017823 (-) True G29135
XR_006250655.1 other downstream 237770 16886974 ~ 16900295 (-) True prkchb
TU43020 other downstream 429105 16707774 ~ 16708960 (-) True G29022
XR_006250870.1 other downstream 1117503 16020444 ~ 16020562 (-) True LOC122343883
TU43541 other upstream 495357 17637159 ~ 17638709 (-) False srd5a3
TU43577 other upstream 593548 17735350 ~ 17736274 (-) True G29417
TU43653 other upstream 828803 17970605 ~ 17979922 (-) True G29473
TU43941 other upstream 1266758 18408560 ~ 18428343 (-) True G29653
XR_006250671.1 other upstream 1515178 18656980 ~ 18661653 (-) True LOC122343054

Expression Profile