RNA id: XM_043236670.1


Basic Information

Item Value
RNA id XM_043236670.1
length 3076
RNA type mRNA
GC content 0.47
exon number 21
gene id brf1b
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 17122433 ~ 17176497 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GGGTAGAAAGTCACAACAGTAATGGTGTTATGagtcaaatgaaatattttaccctaaaaatgactttaatctttttaaacatGAATGCTCAATGAATGCAGTTCAGATCTTTTATTTAACTGGATACTGGATACTGCTTTAAAGTGTTTATAAGTCTTTACTTCCTCTGACCGGTGTGAGTGTCGCTGCCGCTATGAGTCGTCAGTGTAAGAACTGCGGCGGAGCAGACATCGACACGGACCCGGCCCGGGGGAGCGCGGTCTGCACGGCCTGTGGCTCGGTTCTGGAGGATAATATCATCGTGTCCGAGGTTCAGTTTGTGGAAAACAGTGGAGGGGTGTCTTCAGCTGTCGGCCAGTTCGTGTCTGCCGATGGTACATCCAAAGCTCCTGTTTTGGGCAGTGGATTCCACACGAGCCTGGGAAAAGAATCTCGAGCTCAGACGCTGCAAAACGGGAAACGACAGATACACAACCTCGGCAGCCAGCTGCAGCTGAACCAGCACTGCCTAGACACGGCCTTTAATTTCTTCAAGATGGTAGTGAGCAAGCACTTGACACGAGGGCGAAAGATGACACACGTCATAGCCGCCTGCCTCTACCTGGTCTGCAGGACAGAGGGAACGCCACACATGCTCCTGGACTTGAGCGATCTTTTACAGGTTAATGTTTACATTCTGGGAAAGACCTTCCTCCTGTTGGCTAGAGAGCTGTGTATCAACGCTCCGGCCGTCGATCCATGTCTGTACATTCCACGATTCGCCCACATGTTGGAGTTTGGTGAAAAGACTCACGAGGTTTCAATGACTGCTCTCAGACTGCTGCAGAGGATGAAGAGGGACTGGATGCACACGGGACGGCGACCGTCAGGCTTGTGCGGCGCAGCACTGCTCGTAGCGGCTCGTATGCATGAATTCCGTCGTACAGTGAAGGAGGTGATATCTGTCGTCAAGGTGTGCGAAGCCACGCTGAGAAAAAGACTGACAGAGTTTGAGGATACCCCCACCAGTGCCCTGACCATCGATGAGTTCATGCGAGTGGACCTTGAGAAAGAATGTGATCCTCCATCTTTTGTTGCAGGACAGAAAAAACTCAAGATGCAGCAGCTGGAGCAGGAGTTGGCCAAGAAACTTGAGGAATATCAAGGTGAGATCAACTCGTACCGCGATGAGATTGAGACACAGCTGGCGTCAAGCAGCAGAACCAAACTGAGAGGGATTTATGCCTCCTACGCTAGAGAAGATGATGACTGTGTGTCTTTGGCCTCTGGGATGACTGGAGACGAAGACCCAGAGGATGAGGAGATGGAGGCAGCGGCTCAACATCTCAACCAGGAGTTTATCAGTCAGGTGCTCGAACAGGGAGACCAGGGAGGAATGGAGGATCAGGAAGCGGCTAGGGACACAGTACCTCTCTCCAATCAGGCCACGCATGTGCCACTGACAGCGCTCCTCGGCCCTTTGCCCAGTGCAGCCAGTCTTGGTCTAACAGACTCCATTCGGGAGTGCATCACAGAGGAGGATACAACAAACATGGAGGATAAATCAGATAATGGGGAATTGGATCTGAATGGGATTGATGAAGAAGAAATTGAAAAGTACATTTTGAACGAGATAGAGGTGGAGGCCAAGACAGAGCTGTGGATGAAACAGAACGAGGAATATTTGAGAGAACAGAAAGaaaaagagGAGAGAATAGCTAAAGAGAAGGAGCAAGGGACCTATAAAGAGAAGCCAAAAAAGCCATCCAAGAAGCGAGAGCCAATCCTGGCCAGCACTGCGGGAGAGGCCATAGAGAAGATGCTGGAGCAGAAAAAGATCTCCAGTAAGATCAATTATGATGTTTTGCGGGACCTCAACAGCAAGGGCAGCGGGAGCAACGCCACCCAGCAAGCCGAGGATGTGCCTGTCGGTAGCTCCGGGCGCAAAAAGCTGACCCGCCGCAAGAAGCAGCCGAACAAAAGCAATCTTGGCCTCGCAAAACCTGCAAGTCTCATGGGCAAGAGACTCCGCCCCTTAATATCGTCCACACCCAAGAAGAAGAGGACAGCAGCCACACTGTTTAAATACAGATTTGCCATGATGTTGCCACCTGCAGCCCCAGAGCCCCCTCCATTACCCCACCTCCCCGTGTTGGAAAGTGGGCCGGTGGCATATGAGGAACCCgctgaggaggaagaggagaatgaGGAAGAGGCAGAGGAGTCTTGCATTAGCGCCATGGAGCTGATAGGTGGAAACGATTACGGATGTGAAGCTGAAGAAGAGGAGGTATTTTAGACTGCACCCTATCGTCTGTTCCCTGAACTTCTTCTCATCCTCCTATCCACTTCTATTACTCCCTACGGCAAGGAGAGGAGAAGTTAAGGCACATTTGAGACACCTATAATATGCCGCACGTTTACGAAAGGTCATCCTCCCTTACAGTGCATTATATGGCTGGTTAAACTGCAGCATCTGGGAGATGAATGAGATACAATGGGAGTAGGTGGCTGGCAGTTTTAGATTGAAGAGCAAAAccattttagccattttattacattgaaagTTCATCAAACAGAAAGCTCTGAAGTAGTTTCCTGGGTATTCCAGATAATTAGTTTTACAAGTTTTACAGGTACAGGATTTGAATGTCGGCAATTCCTGAAAGGTGAGAATATTGATGTCTGCTTAGCttgctaataatatttaatacattgtgGGACAATGTTATAGAAATTTGTTGCAcgtttacatttgtaaatgcttCAAATACTTCAATTGCAACAATAATTGTACATACACAGTAGGAAGGTGTGAAAATTTCACTATTggtgttttaactttttattttttagctatTTCATGATAtgtctgtttgtatttatttacatgtaacagcattttgttatatttcctaattctaagaaaaagtaaatgttCGGATTATGataaatgttaatgcattgTACAGCAATGTTATGACCCTCGTTTTAACTGTTTTCATTGAAATGTGGATTTCGGAGTACACAATGAAAGcagaatattttaatgtttatgtaaataaattcacatctgtttagaatgttttaatgatga

Function

GO:

id name namespace
GO:0006352 DNA-templated transcription, initiation biological_process
GO:0045893 positive regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0017025 TBP-class protein binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K15196 BRF1, GTF3B; transcription factor IIIB 90 kDa subunit

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006250625.1 lncRNA upstream 3327 17090539 ~ 17119106 (+) True LOC122342667
XR_006250626.1 lncRNA upstream 3327 17093963 ~ 17119106 (+) False LOC122342667
TU43107 lncRNA upstream 36576 17046871 ~ 17085857 (+) False G29089
TU43104 lncRNA upstream 36576 17065277 ~ 17085857 (+) True G29089
TU43106 lncRNA upstream 36576 17065277 ~ 17085857 (+) False G29089
TU43230 lncRNA downstream 42645 17219142 ~ 17219514 (+) True G29178
TU43233 lncRNA downstream 43760 17220257 ~ 17220616 (+) True G29181
TU43244 lncRNA downstream 117878 17294375 ~ 17294640 (+) True G29192
TU43253 lncRNA downstream 208792 17385289 ~ 17385680 (+) True G29200
TU43359 lncRNA downstream 377336 17553833 ~ 17554190 (+) True G29272
XM_043236555.1 mRNA upstream 39313 17040857 ~ 17083120 (+) False ppp1r13bb
XM_043236554.1 mRNA upstream 39313 17041350 ~ 17083120 (+) True ppp1r13bb
XM_043236553.1 mRNA upstream 39313 17041350 ~ 17083120 (+) False ppp1r13bb
XM_043236556.1 mRNA upstream 39313 17041350 ~ 17083120 (+) False ppp1r13bb
XM_043236552.1 mRNA upstream 39313 17051947 ~ 17083120 (+) False ppp1r13bb
XM_043237833.1 mRNA downstream 89960 17266457 ~ 17293636 (+) True nudt14
XM_043237097.1 mRNA downstream 131796 17308293 ~ 17348870 (+) False jag2b
XM_043237095.1 mRNA downstream 131797 17308294 ~ 17348870 (+) True jag2b
XM_043237096.1 mRNA downstream 131797 17308294 ~ 17348870 (+) False jag2b
XM_043237874.1 mRNA downstream 220638 17397135 ~ 17410852 (+) True esr2a
TU42966 other upstream 648052 16473898 ~ 16474381 (+) True G28982
TU42861 other upstream 1136707 15985219 ~ 15985726 (+) True G28899
TU42853 other upstream 1280578 15841372 ~ 15841855 (+) True G28891
TU42722 other upstream 1467252 15650295 ~ 15655181 (+) True cdkn1d
TU42701 other upstream 1566751 15439334 ~ 15555682 (+) True G28806
TU43729 other downstream 1123918 18300415 ~ 18301189 (+) True G29526
TU43756 other downstream 1259963 18436460 ~ 18461317 (+) True G29545
TU43926 other downstream 1706682 18883179 ~ 18886402 (+) True G29642
TU44195 other downstream 2113723 19290220 ~ 19342911 (+) True G29814
TU44225 other downstream 2554765 19731262 ~ 19786128 (+) False G29835

Expression Profile