RNA id: XM_043236671.1


Basic Information

Item Value
RNA id XM_043236671.1
length 1500
RNA type mRNA
GC content 0.52
exon number 7
gene id krt91
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 28080859 ~ 28082970 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

tttttttcctcacttcTCACTCTCTCCAGTCAGAGAACAGAGCAGCAAACCTCCTCTACAATCATGTCTGTTTCATACAGCCAAAGTTACAGGTCCTCTGGAGGATCCATGGGAGGATCCCGCCTATCCATGTCCCGTGGCAGTGGAGGGGGGCATGGCATGTATGCAGGAAGCGTGCATGGGGGAGCTGGAGGACGTGGAACACGTATCTCAAGTGCCTCTGCTTCCCGTTCGTTCTCTGCTGGAGGAGGTGGCGGCTTCGGAGGTGGTGCTGGTGCTGGTTTTGGTGGCGGATTTGGTGGAGGCGCTGGCTTCAATCTGTCTGATGCCGTTGATGTGTCTGCAAACGAGAAAGCCACCATGCAAAACCTCAACGACCGTCTGGCCTCCTACCTGGAGAAGGTGCGCTCCCTCGAGAAGGCCAATGCTGAACTTGAGCTGAAGATCCGGCAGTTCCTGGAGAGCAAGACGGCCCCCTCTGCTCGTGACTACAGCGCCTATTACGCTACTATCAGTGACCTGCAGAACAAAATCCAGGATGCCACACGTGTGAATGGAGGCATCTATCTCAGCATTGATAACGCCAAGCTGGCTGCAGATGACTTCAGGGTCAAGTATGAGAATGAGCTGGGCATGAGGCAGTCTGTAGAGGCAGACATTGCAGGTCTGAGGAGGGTGCTGGATGAGCTGACAATGTCCAGATCTGATCTGGAGATGCAGATTGAAGGTCTAAAAGAAGAGCTGATCTTCCTCAAGAAGAACCACGAGGAGgaACTCTTGGCAGCACGCGCCCAGATGAGCGGACAAGTCAATGTAGAGGTTGATGCGGCACCACAGGAAGATCTGACCAAGGTCATGGCTGAAATCCGTGACCAATACGAGGCAGTTGCTGCCAAGAATCGCAGAGACCTTGAGACCTGGTTCCAGGCTAAGAGCGAAACCCTCAACAAAGAAGTCGCTGCAAGCACAGAAAACCTTCAAACGTCTAGATCAGAAATCACAGAGCTTAAACGCACACTCCAGGGTCTTGAAATCGAGCTACAATCACAACTCAGTATGAAAGCATCGCTTGAAGGCACTCTGGCAGACACACAGGCCCGCTACGCCGCCATGTTAAACGGTTACCAAATGCAGGTGACCAGCCTGGAGCAGCAGCTGGTGCAGCTTCGTGCCGATCTGGAGCGTCAAGGGCAAGAGTATCAGATGCTTCTGGACATCAAGACCAGACTGGAAATGGAGATTGCAGAGTACAGAAGACTTCTGGATGGGGAGGCTGCTGGAACTGTTCAAACCAAGCAACAAACCTCATCCACAACCTCAACTACACGCAGACAAGTGGTCACCATTGTAGAAGAGGTGAAGGATGGCAAAGTGATCTCCTCCACTCAGGCTGTGACCGAGAGCAAGTGAGATTTCAAAGAACAACCAGCACAACTCTCGAGATGAAACAACCCAACTCAAGagtgattgaaaaaaaatcaataaactgGTTTAAATGTG

Function

GO:

id name namespace
GO:0042074 cell migration involved in gastrulation biological_process
GO:0005882 intermediate filament cellular_component
GO:0005198 structural molecule activity molecular_function

KEGG:

id description
K07604 KRT1; type I keratin, acidic

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU46571 lncRNA upstream 13069 27960947 ~ 28067790 (+) True G31548
TU46573 lncRNA upstream 13069 27960947 ~ 28067790 (+) False G31548
TU46575 lncRNA upstream 13069 27960947 ~ 28067790 (+) False G31548
TU46572 lncRNA upstream 13069 28019867 ~ 28067790 (+) False G31548
TU46595 lncRNA upstream 101726 27925447 ~ 27979133 (+) True G31557
TU46642 lncRNA downstream 37282 28120252 ~ 28121159 (+) True G31596
TU46663 lncRNA downstream 61470 28144440 ~ 28162265 (+) True G31603
TU46690 lncRNA downstream 143430 28226400 ~ 28228301 (+) False G31621
TU46692 lncRNA downstream 143430 28226400 ~ 28228301 (+) False G31621
TU46693 lncRNA downstream 143430 28226400 ~ 28228301 (+) True G31621
XM_043237700.1 mRNA upstream 116629 27952149 ~ 27964230 (+) False si:ch211-264f5.2
XM_043237699.1 mRNA upstream 116635 27953450 ~ 27964224 (+) False si:ch211-264f5.2
XM_043237701.1 mRNA upstream 116635 27954366 ~ 27964224 (+) True si:ch211-264f5.2
XM_043238045.1 mRNA upstream 135567 27941676 ~ 27945292 (+) True zgc:174904
XM_043236358.1 mRNA upstream 142039 27934637 ~ 27938820 (+) True LOC122342524
XM_043236236.1 mRNA downstream 23647 28106617 ~ 28110047 (+) True LOC122342444
XM_043236151.1 mRNA downstream 114266 28197236 ~ 28201011 (+) True LOC122342376
XM_043236153.1 mRNA downstream 214332 28297302 ~ 28317582 (+) True LOC122342379
XM_043237531.1 mRNA downstream 271460 28354430 ~ 28360242 (+) True dhdh.1
XM_043236221.1 mRNA downstream 277976 28360946 ~ 28367478 (+) False dhdh.2
TU46402 other upstream 712869 27366230 ~ 27367990 (+) False LOC122342372
TU46403 other upstream 712869 27366351 ~ 27367990 (+) False LOC122342372
TU46406 other upstream 722712 27357443 ~ 27358147 (+) False LOC122342494
unassigned_transcript_953 other upstream 856873 27223914 ~ 27223986 (+) True trnav-uac_5
unassigned_transcript_952 other upstream 939235 27141552 ~ 27141624 (+) True trnav-aac_9
TU46683 other downstream 123988 28206958 ~ 28216248 (+) True G31614
TU46688 other downstream 135763 28218733 ~ 28221417 (+) True G31619
TU46717 other downstream 202057 28285027 ~ 28320694 (+) False G31636
TU46718 other downstream 202057 28285027 ~ 28320694 (+) True G31636
TU46723 other downstream 217057 28300027 ~ 28301346 (+) False LOC122342379

Expression Profile