RNA id: XM_043236685.1


Basic Information

Item Value
RNA id XM_043236685.1
length 3489
RNA type mRNA
GC content 0.48
exon number 13
gene id tbc1d30
representative False

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 1473753 ~ 1486677 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ttagggtaaataaatttaatataaaaggtGTATTGCACTGCACATGCCAGCTGCTCTTCATTCAGAGCCTCGTGTCGTGTCGTGTCGTGTAATGGAGCACGAGTGCAGTAGGAGGACTGTAATCATGTAGGTTAATCCGGAACAGCTCCAGCTGACGAGTGAAATGCAGAAATGGCGCCGTTCTACtcctgatttttatttaacctGTCGCACGGGACTATGACGGAGACGCACTCGGgGGTGGACACCAGGTTGAAGTTCACTATCGAACCTTCTTTAGGGAAAAACGGCTTTCAGCAATGGTACGACGCTCTGAAGGCAGTGGCCAGACTCCCAGTAGGGATTCCCAAAGAGTGGAGGAAGAGGgTATGGCTAACCCTGGCTGACCAGTACCTCCACAGCATCTCCATAGACTGGGAGAAAACTATGAGATTTGCCTTCAATGATCGCAGCAACCCAGATGATGACACTTTGGGAATTCAAATTGTGAAGGACCTGCACAGGACGGGCTGCAGTTCATATTGTGGCCAGGAGGCGGAGCAGGACCGTGTGGTGCTGAAGCGGGTGCTGCTGGCGTACGCTCGCTGGAACAAGACTGTGGGATACTGTCAGGGCTTCAATGTTCTGGCCGCCCTCATCCTGGAGGTCACAGAGGGAAATGAAGGAGATGCTCTGAAGgtgatgATCTATTTGATTGATAAAGTGCTTCCCGATAGTTACTTCGCCAATAACCTGCGTGCCCTCTCAGTGGACATGGCTGTGTTCAGAGATCTCCTGCGACTGAAGCTTCCAGAACTTTCTCAGCATCTCCACCATCTCCAGAAAGTAGCCAATCGGGAAGGAGGAGGGAGCTATGAGCCTCCGCTCACCAACGTCTTCACCATGCAGTGGTTTCTGACCATGTTTGCCACTTGTTTGCCGCATCACACCGTGCTGAAGATCTGGGACTCGGTCTTCTTCGAGGGCTCCGAAATGCTGCTGCGTGTAGCTCTCGCCATCTGGGCCAAACTCGGAGAACGAATTGAGGAGTGCCAGACTGCCGATGAATTTTATAGCATTATGGGCTGCCTGACACAGGAAATGCTGGAGAACAACCTTATCGACTCAAATGAACTCATGCAGACGGTCTACTCCATGGCCCCGTTCCCGTTCCCCCAGCTGGCTGAGCTCAGGGAGAAATACACCTACAACATCACCCCGTTCCCAACCCCTGTCAGAGCAAACAGCAGTCTAGCAATGCATGGATGGGAGAGTGATGATGATGCTGATATGGATGATGAAGACTCTATTGTCACCGCTCTGGGTTGCCTAGGGCCTCTTGGAGGACTTCTGGCCCCTGAGATCCAAAGATACCAAAAGCACCTTAAAGATCAGCGAGCTGACCAGAGCTCACACGGTAGTAACATGGCAGAGCTGAGTCCCGGGGCAGTTGGAGCAGGCCGGGCCGAGCACCAGGCGGCCATCAACAGCATGATGCTGGAACGCATGAGCACAGACATTAGCGCTCTGAAGAAACAGTACTCGCGCATCAAAcagaaacaacagcaacagGCCGGGCTGCTGTACATCCACACagGACCTCGAGTGGAAGCTGAAACTATTGAACCTCATCAAGCCAGTAAGCAGCAGAAGCGCCACATTGATAAGTGTCCAGCCACCAGTATCCTTCCATCTCAAATCGGTCCCTCTCCTGTGGTCAACCATCTTCTCCTGGGCAGGAGACCCAGACCCGGTCAGCGATCCTTAAAGAATGGGATCATCCACAATGGTGGAGGTCCTCAAGCCCACTCCACACCCAGCCAGGATCAGATGATGCGGGCCAGACATCACTCGCCCTGGCGCACACATGTGCGAGCGCACCGGAGGAACATCGCCAGGGCACGAGCACAACTTGGGTTTGATGACTCGCTAGAAATAGAAGACGAACAAACAGATGTGAGCAAAACAGAAGAAGCATCTGAAGAAGGAAGACTTGAGGATGAAAAGCAAGAGAAGGTTGAGACCGAAGGCTCAGCTGTCTCTCAGCAAGACCACAGCACTGGAAAAGAAGAAGATCTCCAAGAGATCAACAAGCAGTTGTCTTCTTTGGAACTGGAGCCAGAACCTTCATCAGAAGCAGATTCTATTCCAAGTACACCACCAGAAACAGCTTCTGATTTACCTACATCATCTCCAGAAGCGGCTTTTGATCCATCTACATCATCTCCAGAAGCGGCTTCTGCTCCCTGTACATCATCTCCAGAAGCGGCTTCTGATTTACCTACATCATCTCCAGAAGCGGCTTCTGATTTACCTACATCATCTCCAGAAGCGGCTTTTGATCCATCTACATTATCTCCAGAAGCAGCTTCTGCTCCCTGTACATCATCTCCAGAAGCAGCTTCTGATCCCTGTACATCATCTCCACAACCAGAAACAACTTCTGATGCACCAACCCCAACACTAACTCCACCCCCAGAACCCAAACCCACGGCCTCAGCTTCActtccatccatccaccatCCAGGTTCAGACTCCTCCAGCTCAGAAAGTGGAGGCTTCCTCAAAAGAAGCCCTTCTACTTCGATGGGAGAACCTCCAAAACCACAGCAGATCTTCTCCCCGTTCCCTTGCATCAAAACCCCTCGCAAGTCCGTCACCGCCAGAAACTTGGGCCTCTATGGTCCAAACGCCAGGACTCCAAACGTGCACTTTCCACAGATGAGCAGAAGCATGAACCATGTCGGAAACACCACAAGGCGGCGATGATGAATTGAGCACTTATTTGATTCTTCATATCAATATGTTTGGCTTAAAAACTCCAACCATGTAAGCACATCTCTAGTATGCTTCCAGACACtctaaaacattacatttaggaaaaatattggAAAATATAATGCTTCCATGAAGTTTATAACATGAATTTATGAAGGATGTTTCccgtttcttttcttttttttttttaaatgaaaccctACATGAACATCTGGGAATTATACCCGACATTGAAAGTATCTCTTGTTGCATGTTCAGGTCGGCAGTATTCGCTACAATGCACTGTGTATGTTTACTTACATGCTTCAAAGCTCAGAAAATCACAAtcaaatgtatgtaaattaCTCATTCTAAATAACCAGGAAATGCTGCAATTCTGCATTGCACAGTCCAATAGGATTTTTTAGCAACCATTCACACTATTTAATCATATAAAGTCAACAGATTTTACATGTTcgcttgtttctgttgtttttgacaACACTGATGTTCATTTTTCAATCATGTCGAGCATTTTATGTTACTCATATTTTGATCTCTCTTtagtaaattattcatttgcCATGATTGACACAAGTTGACATTAAGTTCTCTTTTCTGATGCTCGCCTGCGATTTAACGTCCCTTTGAATGTTTCTCTTCTCTCTAGTAATCTTTGGTGCTTATGAGTAGTGGAGGATCACAGTTGTcccacagaaaataaaagatgtgcaagtacgaaaaaaaaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU37102 lncRNA upstream 146856 1329465 ~ 1331843 (+) True LOC122342419
TU37074 lncRNA upstream 191626 1286612 ~ 1287073 (+) True G24925
TU37037 lncRNA upstream 229530 1247380 ~ 1249169 (+) False LOC122342481
XR_006250559.1 lncRNA upstream 351319 1112895 ~ 1127380 (+) True LOC122342413
TU36909 lncRNA upstream 545588 864840 ~ 933111 (+) True G24811
TU37142 lncRNA downstream 69715 1556392 ~ 1557778 (+) True G24968
XR_006250791.1 lncRNA downstream 183940 1670617 ~ 1672760 (+) False LOC122343488
TU37284 lncRNA downstream 202301 1688978 ~ 1693389 (+) True G25071
XR_006250569.1 lncRNA downstream 297560 1784237 ~ 1787234 (+) False LOC122342451
TU37231 lncRNA downstream 301954 1788631 ~ 1789276 (+) True G25030
XM_043236688.1 mRNA upstream 10222 1463584 ~ 1468477 (+) True zgc:194209
XM_043236281.1 mRNA upstream 15463 1430618 ~ 1463236 (+) True rassf3
XM_043236282.1 mRNA upstream 15463 1446208 ~ 1463236 (+) False rassf3
XM_043236284.1 mRNA upstream 49273 1424632 ~ 1429426 (+) False LOC122342464
XM_043236173.1 mRNA downstream 17367 1504044 ~ 1519640 (+) True ntf3
XM_043236528.1 mRNA downstream 34943 1521620 ~ 1526208 (+) True LOC122342591
XM_043237041.1 mRNA downstream 81587 1568264 ~ 1575414 (+) True cd9b
XM_043237042.1 mRNA downstream 83602 1570279 ~ 1575414 (+) False cd9b
XM_043236885.1 mRNA downstream 118112 1604789 ~ 1609142 (+) False si:dkey-14d8.1
TU37077 other upstream 187475 1288312 ~ 1291224 (+) True ndufa5
TU36860 other upstream 813169 654092 ~ 665530 (+) True G24771
TU36683 other upstream 1104617 373527 ~ 374082 (+) True G24632
TU36680 other upstream 1104875 373527 ~ 373824 (+) False G24632
TU36656 other upstream 1183630 293235 ~ 295069 (+) True G24609
TU37269 other downstream 183835 1670512 ~ 1672959 (+) True LOC122343488
TU37230 other downstream 297615 1784292 ~ 1788096 (+) True LOC122342451
TU37871 other downstream 1628831 3115508 ~ 3117988 (+) True ninj2
XR_006250571.1 other downstream 1632852 3119529 ~ 3306758 (+) False erc1b
unassigned_transcript_298 other downstream 1952454 3439131 ~ 3439654 (+) True LOC122342808

Expression Profile