RNA id: XM_043236687.1


Basic Information

Item Value
RNA id XM_043236687.1
length 2983
RNA type mRNA
GC content 0.44
exon number 14
gene id gnsa
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 1468197 ~ 1473225 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CGTCGCCATAGTACGATTCGTAATTTCGCACACAAGACAAGGCAAGCTAGCTGCTCCCCTGAAGCAGCGTATTACTTAAcataattaatgcttttatcgCAAGAAAAGGTCCTCGTTTAGGCCGtggctttgtttgtttttaactcgGCATCAAAGATGGTTTCGTCTCCGTTtgtaatattgcattttattctgATCTGCGTCACTTTGCATTGTAACAATCTGGCCGAGGCTAAAATGAATCCCAGACCGAATATAGTTTTAATCCTAACTGATGATCTAGATGTGTCTATAGGGGGAATGATCCCTTTAGTGAAGACTAAAAAGCTAATAGGTGATGCTGGGATAACCTTTACAAACACGTTTGTCGCCAGTCCCCTTTGCTGTCCCAGCCGGGCGAGCATCCTGACAGGCAAATACCCTCATAACCATCATGTGGTCAACAACACACTGGAGGGCAACTGCAGCAGCACTGCATGGCAGAAGACCCAAGAGCCCGAGACTTTCCCTGCCTTCCTTCAGAAACACGGCATCTATCAGACCTTCTTTGCTGGGAAGTATCTGAATGAGTATGGGAATAAAAAAGCAGGAGGTGTGGAGCATGTTCCTCCAGGCTGGGATCATTGGTTCGCTCTGGAGAGAAACTCCAAATACTACAACTACACGCTGTCGGTGAACGGCAGGGCACAGCGACACGGACAGAACTACAGCGAGGACTACCTTACAGACGTTCTGGCCAATATTTCCATTGACTTCCTGGAAAACAAGTCTAACCGCAGGCCTTTCTTCATGATGGTGTCCACACCAGCCCCGCACTCGCCCTGGACCGCCGCTCCTCAGTACGAGAGCAGTTTTACCAACATCAAAGCGCCAAGAGACCCTAACTTTAACATACACGGCAAGGACAAGCACTGGCTCATCAGACAAGCAAAGACGCCCATGACAAACTCTTCGGTGGAGTTCTTGGATAACGCCTACAGAAAACGGTGGCGCACTTTATTATCAGTAGATGACCTGGTGGAGAAGGTGGTGAGAAAGTTGGAGGTCAGAGGAGAGCTTGGCAACACCTACGTCATTTTCACCTCTGACAACGGATACCACACTGgCCAGTTTTCTCTTCCGATGGACAAGAGGCAGCTCTATGAATTTGATATCAGAGTTCCTCTTTTGGTGCGAGGGCCGAATATCAAACCCAACCAGACAAGCCcgTTCTTAATAGCAAATGTGGATTTGGGTCCAACAATTCTGGACATCGCTGGATACAGCGTCAATGAAACGCAGATGGATGGGATGTCATTTCTACCCATCATGaCTGGTAAAGGAAACAGCAGCACTTGGAGATCTGATGTACTGGTGGAATACGAGGGAGAAGGAAGCAACATTTCAGACCCAGCTTGCCCTCTGCTGGGCCCCGGGGTCTCGGAGTGTTTccctgactgtgtgtgtgaagacTCGTACAATAATACGTACGCCTGCGTTCGCACAGTAGCACAGGCCACCAACTTACAGTACTGTGAATTTGATGATAATGAGGTGTTTGTGGAGGTCTATAACCTGACAGCAGACCCCTTTCAGTTGAGCAACATCGCCAAGAGCATCGATCAGGAGGTCCTGGAGAAGATGAACCACCGTCTAATGATGCTGCAGTCTTGCTCGGGACAGTCCTGCAGAACGCCAGGCGTCTACGACTCACAGTTCAGGTTTGATCCTCGGCTGATGTTCAGCAGCCTCGTGCCTCACAGAAACAAACGACGACAAAGGCTGTAGTAGAGCGTGGAGAGGTTTACAGGACCAGGACCAATTGAGGGAAAGAATAAATGGCACTGAAACAAACCCTCTTGTTGCCTTCATATCCTAAGGTTCCCCCAAAGACGCCCATGACGTCTCTCCTTCGATGAGGTCTTCAGGGTGCGCCAGGGGTACCAGACACTTTCAGACGGGACGAGCTTCATCCTCTCCAGCTCTCATTCACAGCAGATGCTGACACACATCCGTGAGAGCACTCACATTATATTCCTCTTTACACTCAATCAACGTTCAGTTTTGCTGCTGTAATAATAACACAGGATATCGTCTTTGGTTTAATGTTTTGGTTTACTTTTGCTTTAAGCGAATTTTGTAAAGCGTTTGGAAATTGTTGCGTTATTTGTTTGTTCGCCAGATGCGTCTGAAACATTTCACTCCACGTATTCTATTAAGTTATGAAAGTATTTACAGCTGCACTAAGCCTGCCTTCTGTGATAAGCACGTAGAAtggaagtttgttttttttggctacaaaataaaaaatgaaagcaaatttggatttttttcacttcacaattctgtgtttatatgaaaatttagccttttttttgcTAGATATAAACTTGAATTTATGACAGAAAAATATGAGatttaaattctataaagaCTTTTGtctccattttttttgttgccatttTTGTTTGATATAGGCTTGCACAAGATAATGAActacagtatttttaatgcacaatataccttatattacataaaaatattttctcactTTTTCAGTTCCTGTCACATGCACATGTTTCACAACTAAAAGATTCACTAACTAAGTGCAAATATTGTATTTAGCATTCCTTTATTGTCTttcatatgttttttaaagttttgtgtTTGACAGATGTCAGTTGTGAATGAGCCAAAGCTGTGGATCGCAGATGTATTTTAGTAGGGAAACTTAGGACTGTTTAAGGGACTGTTTAACTTTCATCCTTCTGCCTAACCTTCATCAGTCTTCTGCTGTTACTGGCAATATCTTGAGTCATCCGAGAGGTATCTTTCTTACAATACTTTAACATATCCGTTTAGTGAAGCACTTTCCAGTCTGTGATCAACAAGCCTGACAATAAAGTTTTGCACATAATTCTTTCATCATATTTGTTAATCGCATTGCGATGGTCGATGTGGATGCTTGTCTTGTGTGTTTGATTGATAAAagcattctgaaata

Function

GO:

id name namespace
GO:0030203 glycosaminoglycan metabolic process biological_process
GO:0005764 lysosome cellular_component
GO:0008449 N-acetylglucosamine-6-sulfatase activity molecular_function

KEGG:

id description
K01137 GNS; N-acetylglucosamine-6-sulfatase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU37165 lncRNA downstream 38763 1360961 ~ 1429434 (-) True G24982
TU37164 lncRNA downstream 38763 1427198 ~ 1429434 (-) False G24982
TU37187 lncRNA downstream 47935 1418186 ~ 1420262 (-) True G25001
TU37184 lncRNA downstream 57671 1408536 ~ 1410526 (-) True G24998
XR_006250581.1 lncRNA downstream 106334 1360036 ~ 1361863 (-) True LOC122342498
TU37215 lncRNA upstream 5384 1478609 ~ 1480893 (-) True G25019
TU37228 lncRNA upstream 97068 1570293 ~ 1575419 (-) True G25027
TU37229 lncRNA upstream 102836 1576061 ~ 1576716 (-) True G25028
TU37318 lncRNA upstream 103976 1577201 ~ 1577725 (-) True G25098
TU37317 lncRNA upstream 107255 1580480 ~ 1582614 (-) False LOC122342802
XM_043236189.1 mRNA downstream 124167 1331022 ~ 1344030 (-) True slc13a4
XM_043236819.1 mRNA downstream 144800 1289926 ~ 1323397 (-) False ptprz1b
XM_043236818.1 mRNA downstream 144800 1289926 ~ 1323397 (-) False ptprz1b
XM_043236817.1 mRNA downstream 144801 1289926 ~ 1323396 (-) False ptprz1b
XM_043236816.1 mRNA downstream 144801 1289926 ~ 1323396 (-) False ptprz1b
XM_043237929.1 mRNA upstream 57567 1530792 ~ 1562510 (-) False ano2b
XM_043237928.1 mRNA upstream 57567 1530792 ~ 1562509 (-) True ano2b
XM_043237930.1 mRNA upstream 58826 1532051 ~ 1562547 (-) False ano2b
XM_043236918.1 mRNA upstream 107655 1580880 ~ 1586189 (-) True LOC122342802
XM_043237039.1 mRNA upstream 115054 1588279 ~ 1591305 (-) False LOC122342888
TU37001 other downstream 398101 1069160 ~ 1070096 (-) True G24875
TU36940 other downstream 535089 908946 ~ 933108 (-) False pik3cg
TU36783 other downstream 1276955 186460 ~ 191242 (-) True G24708
TU36763 other downstream 1394711 56637 ~ 73486 (-) False si:dkey-97m3.1
TU36762 other downstream 1434281 28072 ~ 33916 (-) False LOC122343420
XR_006250650.1 other upstream 136135 1609360 ~ 1618298 (-) False zgc:113263
XR_006250649.1 other upstream 136135 1609360 ~ 1618298 (-) False zgc:113263
TU37319 other upstream 180366 1653591 ~ 1654807 (-) False ccdc167
TU37444 other upstream 428618 1901843 ~ 1902567 (-) False rsph9
XR_006250653.1 other upstream 569728 2042953 ~ 2088579 (-) True cald1a

Expression Profile