RNA id: XM_043236688.1


Basic Information

Item Value
RNA id XM_043236688.1
length 1890
RNA type mRNA
GC content 0.48
exon number 9
gene id zgc:194209
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 1463584 ~ 1468477 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CACACTTCAGCGCGGAGAGCAGCGCGTCGTCTTTCATGGCGTCCGTGAGCACACGCTGAACTTTATACAACTCTGAGAAAGACGCAACCATGTTAGGGGCCGGTCCTGTAAAGGTTTTGTTGCTGGCAGTTTCAGTCGGTGTGTATCTCATTCCCTCCCCTATTGATCCTGAGCCGTACACATTCGAGGGCCCCCCGCCTGCCCTGGACGGCCCTCTGGCAGTAAACACACGGTTACAGAGAGGTCGGCGACTGTTTTCTGGTCAAGTCAAAGGCCTGGAGTCTTTCACGGCTGACCAGAACGGGAACATCTACACAGGCTCCGTCGACGGGAAGTTGTGGAGAATCAGCAACGGATCGCTCTCTTTCGTCACTCAGATGGGCCAAAACATCCCTGAATGTGGCACGAGTATGGACTATGAGCCAGTGTGTGGTCGTCCTCATGGTCTGCGTCTGGACAGAAACGGGCAGCTCATTGTGGCCGACTCTTATCAGGGGCTGTTCAAGGTTGACCCCTGGACTGGAGAGAAGACGCTGCTGTATTCCAGCAAAGTGGGAGCTGATGGGATTCCCTTTGGCTTTCTGAACGGTCTGGAGATTTCTAAAGACGGAACTGTGTTTTTCACGGACTCCAGCAGTAAATGGGGAAGGCGTCACGTCCGTTATGAGGTGTTGGAGACAAACCACCTGGGTCGCCTTCTCTCGTTTGACCCTGTGACCGGCCGTGTTCGGGTGTTGTTGGATTCTCTCTACATGCCTAATGGCTTTGCCTTCTCACCTGATGAGGACTTCCTCCTCCTGGCTGAGACCAGTGTCGCACGTATTACAAAGTTCTGGTTGAAAGGACCTAAAGCGGGCACCAAGGAGGTCCTCCTGAACAACATGATCGGTTATCCTGATAACATTCGTCTCAGTGACCGCGGCACGTTTTTAGTGGGCATAACCACCATTAGATTCAGAGGACAACTTTTCCCACCGTTCTTGGATCTGATTGGCCCGTATCCTGCTCTTAAACGCTTCATAGTGAAGCTCGTTCCTCTCAGCTGGTACAATGTTCTGCTGCCCAAGTACGGCTTGATTCTGGAGGTGGGGCCTGCTGGAGAGGTGATGGACAGCCTCCATGACCCCACGGGCAGCCTCACGTGGGCCATCAGCGACGTCTTCCAGCAGGGGACACAGTACTACCTGGGCAGCACTGACCTGCCGTTCCTGCCTGTTCTGGACGAGTGGAGCTGACCGTCTGAGACGCTTACAGGTGGAAAACCTTCATAGAGAATGTAAAACGATTTCCTTTTAACAACGCACTGCTGTCTTGCGAAGGAATTGCTTGTGGTTCTAACTGTGATTTCTGACTTTAAGTCTATGGTGCTATAATTTGTCTAAAACGCGTTTTAACTATTAGTGCCacattctgttttgttttatgtttttctgaACTGCAAAATGCACCGGTCAGCATGTACACTAGAAATGGAAGATTCGGAAGCATAGCTGTTcccaataaaaatgcaatataatgcaaaagacaaaaataacatgttGCACTATTTAGTGGGAGTCAGAAATCCTTAGAgaatcaagcaaaaaaaacaacaacactgcaacaaaaatatttcagaatgctTTTATCAATCAAACACACAAGACAAGCATCCACATCGACCATCGCAATGCGATTAACAAATATGATGAAAGAATTATGTGCAAAACTTTATTGTCAGGCTTGTTGATCACAGACTGGAAAGTGCTTCACTAAACGGATATGTTAAAGTATTGTAAGAAAGATACCTCTCGGATGACTCAAGATATTGCCAGTAACAGCAGAAGACTGATGAAGGTTAGGCAGAAGGATGAAAGTTAAACAGTCCCTTAAACAGTCCTAAGTTTCCCT

Function

GO:

id name namespace
GO:0009058 biosynthetic process biological_process
GO:0016844 strictosidine synthase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU37102 lncRNA upstream 131741 1329465 ~ 1331843 (+) True LOC122342419
TU37074 lncRNA upstream 176511 1286612 ~ 1287073 (+) True G24925
TU37037 lncRNA upstream 214415 1247380 ~ 1249169 (+) False LOC122342481
XR_006250559.1 lncRNA upstream 336204 1112895 ~ 1127380 (+) True LOC122342413
TU36909 lncRNA upstream 530473 864840 ~ 933111 (+) True G24811
TU37142 lncRNA downstream 87915 1556392 ~ 1557778 (+) True G24968
XR_006250791.1 lncRNA downstream 202140 1670617 ~ 1672760 (+) False LOC122343488
TU37284 lncRNA downstream 220501 1688978 ~ 1693389 (+) True G25071
XR_006250569.1 lncRNA downstream 315760 1784237 ~ 1787234 (+) False LOC122342451
TU37231 lncRNA downstream 320154 1788631 ~ 1789276 (+) True G25030
XM_043236281.1 mRNA upstream 348 1430618 ~ 1463236 (+) True rassf3
XM_043236282.1 mRNA upstream 348 1446208 ~ 1463236 (+) False rassf3
XM_043236283.1 mRNA upstream 34158 1424627 ~ 1429426 (+) True LOC122342464
XM_043236284.1 mRNA upstream 34158 1424632 ~ 1429426 (+) False LOC122342464
XM_043236285.1 mRNA upstream 34158 1425960 ~ 1429426 (+) False LOC122342464
XM_043236681.1 mRNA downstream 5276 1473753 ~ 1486677 (+) True tbc1d30
XM_043236682.1 mRNA downstream 5308 1473785 ~ 1486677 (+) False tbc1d30
XM_043236683.1 mRNA downstream 9344 1477821 ~ 1486677 (+) False tbc1d30
XM_043236684.1 mRNA downstream 9348 1477825 ~ 1486677 (+) False tbc1d30
XM_043236685.1 mRNA downstream 10222 1478699 ~ 1486677 (+) False tbc1d30
TU37077 other upstream 172360 1288312 ~ 1291224 (+) True ndufa5
TU36860 other upstream 798054 654092 ~ 665530 (+) True G24771
TU36683 other upstream 1089502 373527 ~ 374082 (+) True G24632
TU36680 other upstream 1089760 373527 ~ 373824 (+) False G24632
TU36656 other upstream 1168515 293235 ~ 295069 (+) True G24609
TU37269 other downstream 202035 1670512 ~ 1672959 (+) True LOC122343488
TU37230 other downstream 315815 1784292 ~ 1788096 (+) True LOC122342451
TU37871 other downstream 1647031 3115508 ~ 3117988 (+) True ninj2
XR_006250571.1 other downstream 1651052 3119529 ~ 3306758 (+) False erc1b
unassigned_transcript_298 other downstream 1970654 3439131 ~ 3439654 (+) True LOC122342808

Expression Profile