RNA id: XM_043236692.1


Basic Information

Item Value
RNA id XM_043236692.1
length 2498
RNA type mRNA
GC content 0.50
exon number 17
gene id ints13
representative False

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 10676477 ~ 10685951 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AAATGAAGCATTCGACCTTTATCaaagttataatatttaaatatgattttatgttCACTGCTTATCCCCGGGGTGACAGTCTGCACTAGGACCGTTTTATTTGAGCACACGGGGCGGAATTTCACTGACGGAAGTATTCTCTGTGCTGCAGGGCCAGGATGAGGATGTTCTCGGTTTCGCACAAGACGGCCTTTGTGGTCGATCACTGCCCGTACATGGCAGAGTCCAGCCGGCAACTGATTGAATGTGACATGCTGACCAAAAGCCGTTCACAGGGCGTGATCCCCCTGGCCCCAGTGTCCAAATCTCTCTGGACCTGTGCGGTTGAGTGCTCCATGGAGTACTGCCGGATCCTGTACGACGTTTACCCCACCAGAAAACTGGTGAACTACATCGTGAGCGATTCTGAGGTTCACATCTTGAACAGCTGGAAGCAGGAGGACCAGAACACACACGAGCTGATGTCTGCTTTGGCCGCCGTCGGGCCTCCGAACCCCCGTCAGGATCCTGAATGCTGCAGTGTCCTGCACGGGCTGGTGGCGGCTGTGGAGTCGCTGTGTAAGATCACGGAGTATCAGCATGAGTCTCGCACCACTCTCATGGACACGGCTGACCGAGTGGCCAACAGGGGGCGCATTATTTGTCTCACCAATGCCAAAAGtgACACTCATGTCAGAATGCTGGAGGACTGTGTGCTGGAAACCATTCAGGAGCAAAACAAACGGGCAGCGGGGTCTGACAGACTGATGCCAATTCAGCAGTGCGAGCTTGTGCTGGTCCACATCTATCCTCAAGGTGAAGAGACTCTGGTCTCAGATCGCCAGAAGAAAGAGCTCTCGTCAGTGTTGAGCAGCGAGGTTCACAGTGTGCGAGCTGGACGGTATCTGGCCTGTAAACTGAATGTGCTGGTTCAGCAGCACTTTGATTTGGCCTCCACCACCATCACAAACATCCCCATGAAGGAGGAGCAGCATGCTAACACTTCAGCAAATTATGACGTTGAGCTTCTTCACCATCGAGATGCGCATATGGAATTTATTAAGAGTGGTGATTTGCACATGGCTGGCAGCACCAGCAGAGACAGCGGGCTGAAGGAAACGGTCACTCTCAAATGGTGCACTCCACGTACCAACAGTGTAGaacTGCATTACTGCACAGGGGCCTATCGCATTTCTCCAGTAGATGTTAACAGCAGGCCATCTTCCTGTCTCACCAACTTCCTGTTGAATGGCCGCTCCGTGCTGCTCGAGCAGCCTCGCAAGTCAGGATCGAAGGTCATCAGTCACATGTTGAGCAGCCATGGAGGAGAAATCTTTCTGCATGTTTTGAACAGCACACGTTCCACGTTGGAGGATCCACCCTCCATCAGCGAGGGCTGCGGAGGACGAGTGACTGATTACCGCATCACCGACTTTGGTGAGTTTATGCGTGAGAATCGTTTGACTCCATTCCCAGACTCGATGATGGATGCCGCAGGCAGAGCTCCAGTCGAGAGAGCCAAGTCACAGCTCGAACGACACACACGATACTGGCCGATGATCATCTCCCAGACCACCATCTTCAACATGCAGGCGGTGGTACCATTAGCTAACCTCATAGTGAAGGACACTCTAACAGATGAAGATGTGCTGACCTGTCAGAAAACTGTCTATAATCTTGTTGATATGGAGCGGAAGAGTGACCCTCTGCCAATCTCAACTGTAGGCTCCAGAGGAAAAGGACCCAAACGTGATGAGCAGTACCGAATCATGTGGAATGAGTTGGAGACGTTGGTAAAGGCGCATGTGGGCACCAGTGAGCGGCACCAGCGTGTACTGGAATGTATCAGCGCTTGCCGGAGCAAACCACCCGAGgaggaagaaaggaaaaaaaggggACGAAAGAGAGAGGACAAAGAGgacaaaactgagaaaaatggCAAGGACACAGAGGAGAAGAGCTGGACCACAGATGCTGAGAGGCTGAAAGGCgtaatggagagagagaaggatgaACAGAGTGAATGCGAGATCATCAAAGATTCACCAGATTCTCCGGAGCCCCTGAACAAGAAACCACGCTTAGCTACAGAGGAGCAACAGCCTCCAGAGAAATCTAAAgGTCCTGTGTCGCTACTCGCCCTATGGACTAATAGAATCACTCAGGCCAACTCCAGAAAGCATCAGGAGTTTGCAGGAAGATTAAGTTCAGTCAATAATAAGGCTGAACTTTATCAACATCTGAAGGAAGAAAATGGGATGGATGTTCATGAGAATGGAAAAGCCACCAGATGATGTGTGGAACACGCCTCTTCTCATCTCTGCAGGATCATTGATTTGTTGGGAGGATGTGATGTGACCTTTGGCATGATATCAAATGATGTTTTTGCCAGGATGCTGGTTTTGTGCCAGACCAAGAAGAGCTAGGCTATGTTTTATAAGGACACACTTTTTATATATGCTTGTTTGTACAAAGAGTCTGTAATATTCCGAAACAGAATAAAGAAGTTGTAAACTCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU41375 lncRNA downstream 16503 10649898 ~ 10659974 (-) True G27910
TU41347 lncRNA downstream 113705 10503634 ~ 10562772 (-) True G27894
TU41363 lncRNA downstream 150055 10524539 ~ 10526422 (-) False dcp1b
TU41344 lncRNA downstream 168924 10484256 ~ 10507553 (-) False G27894
TU41414 lncRNA upstream 28679 10714630 ~ 10720284 (-) True G27940
TU41416 lncRNA upstream 28679 10714630 ~ 10716610 (-) False G27940
XR_006250620.1 lncRNA upstream 244646 10930597 ~ 10932401 (-) True LOC122342624
TU41464 lncRNA upstream 440551 11126502 ~ 11259483 (-) False G27974
TU41466 lncRNA upstream 440551 11126502 ~ 11156744 (-) False G27974
XM_043236647.1 mRNA downstream 30718 10637783 ~ 10645759 (-) True napepld
XM_043236646.1 mRNA downstream 30720 10642538 ~ 10645757 (-) False napepld
XM_043236648.1 mRNA downstream 31224 10642538 ~ 10645253 (-) False napepld
XM_043236649.1 mRNA downstream 31224 10642538 ~ 10645253 (-) False napepld
XM_043236643.1 mRNA downstream 142934 10524531 ~ 10533543 (-) False dcp1b
XM_043236690.1 mRNA upstream 479317 11165268 ~ 11213298 (-) True pawr
XM_043236772.1 mRNA upstream 534585 11220536 ~ 11275588 (-) False ppp1r12a
XM_043236770.1 mRNA upstream 534585 11220536 ~ 11275588 (-) False ppp1r12a
XM_043236771.1 mRNA upstream 534585 11220536 ~ 11275588 (-) False ppp1r12a
XM_043236768.1 mRNA upstream 534585 11220536 ~ 11275588 (-) True ppp1r12a
XR_006250794.1 other downstream 312911 10358424 ~ 10363566 (-) True zgc:193726
TU40990 other downstream 319272 10355711 ~ 10357205 (-) False zgc:193726
XR_006250565.1 other downstream 1376298 9271972 ~ 9300179 (-) False uhrf1bp1l
XR_006250745.1 other downstream 1667173 9004260 ~ 9009304 (-) False klhl42
XR_006250787.1 other downstream 1735206 8895792 ~ 8941271 (-) False LOC122343470
TU41528 other upstream 736118 11422069 ~ 11424083 (-) False ppfia2
XR_006250735.1 other upstream 740546 11426497 ~ 11545812 (-) False ppfia2
TU41650 other upstream 1328680 12014631 ~ 12015767 (-) True G28093
TU41785 other upstream 1795969 12481920 ~ 12489156 (-) False cpm
TU41786 other upstream 1796151 12482102 ~ 12489156 (-) False cpm

Expression Profile