RNA id: XM_043236707.1


Basic Information

Item Value
RNA id XM_043236707.1
length 5921
RNA type mRNA
GC content 0.47
exon number 23
gene id fgd6
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 13384588 ~ 13403216 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTTTTATTGAACTCTTTGACTGGACTTCGCCGTTCCAGCTTTACAAAAGCGGtggcacacacaaaaaaaaccccacggCAAGCATGGAACACGCTCCAACTTATTAGAAATACGAAGCCTTCGGGAGATCTTTCGAAGATACCGAGTCGTCTCCCCTTTTAGGACCCGCGATGGCTCCCGCGAGAAGAAAGGCGCTGAATCCGAAGGAACTGTGCTGAATGCGGCTCATTCATGGAGTGAAGTGAGTCGTTCGGGGATCATGAGTACAGGAATGAAGAAACCACCAGTTGCCCCCAAACCCAAGCTGGTTCAGTCACAGAAACCATCACCTCCCCCCATCGCCCCAAAACCAGAGATCCTGCTGCCTTCGCCCTCACCCACTGCGCACAAAAGAGGAAAACCTGCTGTCGCCCCCAAACCATGTTTACCCAAAGCCCCTCAGAAACCCGTCCAGCCAAGACAAAATCCCTGCAAAACCCAACTTCCCCCTGTATCCAAAAACGGGGGTCCCGCTCTACTATCCTCACACCTGTCCCATTACATTATACCACCCAGGACTCAAGGTTATCAACTAGGTAACAGCAAATCGGAGGATTCCAAGGAAGTATGCGGAACAGCCGAGGTGGACATCCCAAAAGAACAGTTGTTTTACAATGACACATTGGAGCGTGCTTCCCTGCCTGAACGGGACCAAATGCATGCTCCCATGGACTCATCCCACGCTTTCACAGAGACACAGGAAGAAGCAAACTCTGACACATTAGAAAAAGACCAGGCAGGTACACAAAATCAAACTTCTGGGCAGATCCCAAGTCACAGTCCTACGGAACCCCTGCAGGAATGGCCTGCAGAGCAGAAACACAGCGGGAACTCAATTTTTAGCTCTTGCACCAGTGACAGTGATGGTGTTCCTGCACCGCCAAGCAAGCCTCTCCCCGTACCCCATCCACGACGCCCCCGGAGGGCATTATATAGACAGAACGTCGTGGAAAGTGCACCTTCGGACACCCAAGCAGATACACCTACGGAGAATCCTGAACACCTTCAGACAGACGCATTACTAGAAAAATCCGAAAACACTTCAGAAAGCTGTTGCACCTACACGGACGCTGCGTCTAATCTAAGTTCCCCTGAAGAGAACTCGGAAAACACGGACACCGACTCGACCAACGCTGACTCTTTGCACAAAGTAGACTCTTTTCACAGTGTACATACCGAAGACGTGCCTTTTGATCTAGACTCCGCCCACTATTCAGTTCCGACAAATGGTGTAACTTTAGCTTCCTTGAACACAGCTGCGGAGGAGGGGTCGCAACCTCCGGCTCCGCCACCTAGACAGAAATCCCTCCCCCAAATGGTCGATTCCTCATACGAGGCCTCAACATCAGTGGACAACTTGCTCTTGCATTGCCACTCAGATCTTCAAGAGGTTACGTGTACAGATGAGGAGGCGCAAAGCGATGATGAAGATGACGGAGCATATGGAGATTTTGCTCGATACCCGATAACTCGGAGTCTTCCTAAACAGATTAAGCTCAGCTGTGGATCACAAGTGGCAGCTTTAACCAAGCCGCCTCTGGACGGGGAGGAGAAGTCACCAAAAGTCATGCCTAAAAAGCCCCAACGAAACAGTCTTCCAGCATCCGTCGCGTTGCGGAAGCAGAACACACCTCCGCTAACGCATACTCCCCCTCCGCTTCCTAACTCTAGTCCTCCCATGTTCCGCGAGCTTCCGGCACCTCCTCAAGAGAAACCTTCTTGGCGAGTCGCTCTTCCTAGCATCCCTCTCTTTGGTAGAAACCAGCCGACTCGCAGTAACAGCCAGCCACAGGCTGGAGGTGTGGGACCTGTTTTTGTCAAACAGAGGGCGAAGTCGTTTTCCTCTGCGGACCTTCAGCGAGTGGACACCGGGTCCGAATCTTCCGAGCCGTTGGCGCGCTCCGATCAAACGCGCCGCAGCTTGCGGAAACTTCTAGAGCTGCGTGTATGTGCGCGGCTGCTTCCGAGGTTGCTTCGCAGTGGGCAGTCCCTGGATTGCACTCGTACTGATGCAGAATACGAGGAGCGTAAAGCCGCACCCTCCAATCAGGTCGCACCTGCGGATGATGAAGAAGCTCAAGGTAACAGTGAGGCTGACTGCGGGGTGGAATACGAGAACGTCCCATTATACGAGGAGATTCCAGAGTACATGAACTTGCCCTGGGTTTATTCCAACCAGGATGTGGACACGGGCGTGTATGAAGTTCAGGAACCATGTGAGGTGAACAGATGTTCTGTGAGTGGTGATCTGTCGGAGGATGGATTGAGCTCGAACGAGGAAGATGGGAACAGTTCTGACTCCAGCAAAGAAGACATGAGCCATTCAAAAGACAAAGAGGAGGTCGAGAGGGCGAAGAGAAACAAGGTGGTCCACATCGCCATGGAGATCATGAGCTCAGAGAAAGTGTTCGTGGACGTTCTGAAGTTACTTCACATCGATTTCCGGGATGCGGTCGCCAAAGCTACCCGTGCGAGCGGGAAACCGCTGGTGGAGGAGAAAGTGTTGAATCAGATCTTGTACTATCTGCCCCAACTCTACGAACTCAATAAAGACCTGCTGAAAGAGCTGGAGGAGAGAGTGGCCCACTGGTCTGATCATCAGAGATTGGCTGATATCTTCGTTCAGAAAGGTCCGTATCTGAAGATGTACTCTACCTACATACGAGAGTTTGACCGTAATGTGGCTCTGCTGGATGAACAGTGTCGCAAAAATCCTCCTTTTGCTAACGTTGTGCGTCAGTTTGAGATGAGTCCTCGCTGCGCTAGTCTTGCTTTAAAGCATTACCTGCTGAAACCGGTGCAGCGGATACCTCAATACCAGCTCCTGCTCACAGATTATTTGAAGAACCTTCCTGAGGATTCATCCGACTATAAAGACACTCAAACTGCTCTCAGCGTGGTGAAAGAAGTGGCGAACCACGCAAACGACATTATGAAACAAGGGGATAACTTTCAGAAGCTGATGCAGGTTCAGTACAGTCTGAACGGTCACCATGAAATTGTCCAGCCTGGCAGGGTTTTCTTAAAAGAGGGCACTCTGATGAAACTTTCCAGGAAGGTTATGCAGCCCAGAATGTTCTTCCTGTTTAATGATATTCTGCTGTACACAACCCCCGTTCAGTCCGGCCAGTATAAAGTCAACAGCATGCTATCTCTGGCTGGCATGAAGGTGAGCAAACCAAGTCAGGAGGCCTATCAGAATGAGTTAAACATTGAGAGTGTGGAACGCTCTTTCATACTGTCTGCCAaTTCAGCCACAGAAAGAGACGAATGGCTGGAAGCCATCGCTAAAGCAATAGACGACTACACCAGAAAgaagatttctttcttttccagtCGAAGCCAAGAGttggagggAATCTCGGATGACGGCCTGCCGCTGGGCTCTAAAGCTCCGATCTGGATCCCGGATTTGAGAACGACCATGTGTATGATCTGCACGTGTGAGTTCACGCTCACCTGGAGGCGCCACCACTGCCGTGCCTGCGGAAAGGTGGTGTGTCAGGCATGCTCGTCCAATAAATACTACCTGGAATACCTGAAGAATCAGCTGGCAAGAGTGTGCGACCACTGCTACATCAAACTGCAGGACAAGGGTGACCAATCCAATGTGACCGTTTCCCCCGGTGGGCGGAGTTCGACCTTTGCTTTTTCCAGAAAGCAGAAGAAGATACCTTCCGCGCTCAAAGAGGTGTCCGCCAACACGGAGAATTCTTCCATGAGCGGATATCTGCAAAGATCCAAAGGCCACAAGAAACCGTGGAAGAGGCTGTGGTTCGTCATCAAGAACAAAGTCCTCTACACGTACGCCGCTAGTGAAGATGTTGCGGCGTTGGAGAGCCAACCCCTGCTGGGCTTCTTCCTCCGAGAAGAGAAGACGGGACCGGCtcaaaaaatgcagtttaaactGTATCATAAAAACACGCTCTACTACATCTTCAGAGCGGAGGACGTCCCCACCGCTCAGAGgtggATCGAAGCGTTTCAAGAGGCCATGATCCTTTGACTGGCCTGGATCGGATTCGGATGGAATGAATAAATGTCGCTTCTTCTTTGGGTCTCTGCGCTGCGTGCGTGGGCAGCCAGTTTAATGAGGCATAAATCAAAACCCAGTTGGAAGCAAAGGACGCTGGTAAATGTAGTTTACGCATTAATCTATTTTAAGCAGCCTAATGAAGGTAAATCGATTCAGCCTGCCTCCGTCGCGAGGCGTTAATCCATCGTGTCGTTCTCAATGTCATTTTTAGGAAACACTGCCTCTCTGTGCCAGTTCCTTTTCGGTGCTTAATATTACCACGAATCCCGCCCACAAAGCGTTCggggtcaaaaaaaaaaacgtgaccGGTCACGAGCTCGATTTCAGCGACTCCTGACCATTAGGTTTGTCTATGAATCATATCTGAAGCTGAACGAATCCTGCCCGCTTTTCTGAAACCGTTTACGACGGAACCCGAGGCGGTTTGAATCCAGTCGCTTGTCGCCCGAAGAGGGTTTAAAAAGGTTCGGTCAGGGGGGTGTGATTCACAGTCAAGTCTGAATGCGCACGAGGAAGTGTGACAAAGGAATGTCTGATGCCAGGTgcggtgcattgtgggagaTTTCGAATTCAACTGTGAAAGCTGGGAAAAGAGGGCTTAGAACACGCGTGGGCCTTAATCACAAAGCACAGAGCgacttttatgtaaaaattgtaCATGAAACCAGCGTTTTTGGACATTGATGgtaaacgtttttattttatattcaaggCGTTGAACGCGacggtttatttttttattgagaaaGATCGACAACCGTTTACCTAAATTTGACAAATcgtgtatttttatgtaaaaaaaaaacaaatacataaaaatatgtcgATTTTTACAAATAGTTCGTGCGTGGAATACGAGCATTTaggtaatatttttttggatggcattacatgacatttatttttgacaaacaCTTCATGCGTTATATGCGACAATTTTGTAGATGAATGGTTTTATGAacaatttatacatatttattctgcttgtattccctgaaAAAAGGCCCTTTTATTTGGTTTTCAGACAGTTACCGTTacgaaaatgttttaataatcttaaaccctttttttttttttattatcttttgtaCAAAGTAGGTGTTTTGactgttgttttaaaccttATACTGGACAGAACTGGAAGTgtacatattttgtaaatggtAATATAATGCAGGCGTATTTAAAATAGTTCGGGATGTTTAATGGCCTCAATGAATTATGGGTAGTAAAGACACAGTGCCAGGCTGGCTAACTCAGCACTGTTCTAACTTACTATATTAGACCTTTATAGCACACCGGCTGTGAATAGAAAGAAAAACTAGCGCTCTTATCAGGGAAAGATGTAACACACATTGAATACTCTAATGCACCTTGTTCAGGACCACCTCTCTTAACACTTAGACAATGGGTATGACCTGATTATGTTCTCTACAGTTTTCACTAAGGTCCTTGTCAGTTCCAGCCACAGAAAGCCACTGATCTTTCACTGTTTGAAGTGTaacaagattttatttgtcttgCGGCGATGTTCGATATCGATCACGTGTGttgaatgtttgtttacattttgtaagATTGTTTTGCATTTCGGGAAAAAATTTGATACACCACTGTTACgtcttttgggttttttttttttttgtgtgtgtgtgtgtgattcactTTTAAGAAAAGTATGATTACTATTCCTGATGCTTCTTGTCAGATCGGCACTAGTTCCCGAAGGAAATCGTTTTCGCCCTGAAGTAATGTGTTAATATCTTGAGGATTTCAAGGGAGTAGGCTGCGCCCCGACATAAATGTAAAgtgcaaataatttttaataaataacgtAATAAGAAAA

Function

GO:

id name namespace
GO:0035023 regulation of Rho protein signal transduction biological_process
GO:0046872 metal ion binding molecular_function

KEGG:

id description
K05724 FGD5_6; FYVE, RhoGEF and PH domain containing 5/6

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006250599.1 lncRNA downstream 40331 13343726 ~ 13344257 (-) True LOC122342564
TU42067 lncRNA downstream 64840 13311873 ~ 13319748 (-) True G28377
TU42039 lncRNA downstream 132554 13250651 ~ 13252034 (-) True G28359
TU42040 lncRNA downstream 132554 13250651 ~ 13252034 (-) False G28359
TU42033 lncRNA downstream 139200 13242506 ~ 13245388 (-) True G28353
TU42094 lncRNA upstream 24812 13428028 ~ 13432669 (-) True G28397
TU42096 lncRNA upstream 24948 13428164 ~ 13432703 (-) False G28397
TU42147 lncRNA upstream 207000 13610216 ~ 13612771 (-) True G28434
TU42310 lncRNA upstream 417480 13820696 ~ 13827052 (-) True G28545
TU42337 lncRNA upstream 463561 13866777 ~ 13867298 (-) True G28564
XM_043236711.1 mRNA downstream 142 13376174 ~ 13384446 (-) True nr2c1
XM_043236714.1 mRNA downstream 9245 13373631 ~ 13375343 (-) True ndufa12
XM_043236432.1 mRNA downstream 22651 13345955 ~ 13361937 (-) True tmcc3
XM_043236433.1 mRNA downstream 22652 13345955 ~ 13361936 (-) False tmcc3
XM_043236445.1 mRNA downstream 94882 13281183 ~ 13289706 (-) False rbm17
XM_043236710.1 mRNA upstream 30093 13433309 ~ 13440103 (-) True usp44
XM_043237130.1 mRNA upstream 57827 13461043 ~ 13465673 (-) False si:ch211-244b2.3
XM_043237129.1 mRNA upstream 57827 13461043 ~ 13465672 (-) False si:ch211-244b2.3
XM_043237132.1 mRNA upstream 57827 13461043 ~ 13465671 (-) False si:ch211-244b2.3
XM_043237131.1 mRNA upstream 57827 13461043 ~ 13465671 (-) True si:ch211-244b2.3
XR_006250598.1 other downstream 22650 13316932 ~ 13361938 (-) False tmcc3
XR_006250597.1 other downstream 22650 13316932 ~ 13361938 (-) False tmcc3
XR_006250596.1 other downstream 22650 13324525 ~ 13361938 (-) False tmcc3
TU41785 other downstream 895432 12481920 ~ 12489156 (-) False cpm
TU42098 other upstream 8408 13411624 ~ 13422539 (-) False G28397
XR_006250767.1 other upstream 289729 13692945 ~ 13698715 (-) False LOC122343399
XR_006250766.1 other upstream 289964 13693180 ~ 13698715 (-) False LOC122343399
XR_006250741.1 other upstream 412358 13815574 ~ 13831851 (-) True LOC122343280
TU42363 other upstream 572141 13975357 ~ 13980559 (-) True G28575

Expression Profile