RNA id: XR_006250632.1


Basic Information

Item Value
RNA id XR_006250632.1
length 907
RNA type transcript
GC content 0.48
exon number 10
gene id LOC122342701
representative False

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 13882894 ~ 13961098 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ctctctctctctctctctctctctctctctctaacacatCTCTCATGGCGAGCAGAGGGGACGCTGTCTCTCTTACGGACTGACAGGAGCTCCGCTTTCCTCCTCGCATTCTTTCCAAATCACCCATGAATTCTCTCGCGTAAAGGGGCGAGAACGTCCGTCCTCTTCCGTCTAAAAGGGTTAAAGAAAAGAAACCTCGCCATGAACAGCATGAGCAGTTGCGGTTTCCTGAATATGGCGACGATAGGAGAGTTCGACCCGCTCAACGCCACCATTCCTGCTACAAAAGTTGAGATTACGGTCTCGTGCAGaaacctGCTTGACAGAGACACATTTTCCAAATCAGATCCAATCTGCGTGCTGTACACCCAAGGCATTGGCAACAAAGAGTGGCGAGAGTTTGGACGAACGGAAGTCATCGATAACACTTTGAACCCAGATTTTGTGCGAAAATTCATATTGGACTACTTCTTTGAAGAAAGACAGAACTTAAAGTTTGATCTGTATGACGTTGACTCCAAGAGCACCAACCTTTCGAAACATGATTTTCTTGGTCAGGCCTGCTGTACATTGGGTGAGGTGGTGGGATCATTGGGTGGCCGTATGGAGAAGTCTCTTGGGGGGATTCCAGGGAAGAAATGTGGGACAATTATTGTAAAGGCAGAGGAGCTTAGCAACTGCAGGATTCACCATTTGCCATAAGACAGAGGTGGTGAAGAACACGCTGAACCCTGTGTGGCAAGCCTTTAAAATCCCGGTCAGAGCCCTGTGCAATGGCGATTATGACAGaacGATCAAGGTTGAAGTGTACGACTGGGATCGGGATGGCAGTCATGACTTCATTGGAGAATTCAGCACAAGTTACAGGGAACTGTCAAGAGGCCAGTCACAATTTAACGTGTACGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU42214 lncRNA upstream 54357 13828025 ~ 13828537 (+) True G28486
TU42167 lncRNA upstream 122782 13757967 ~ 13760112 (+) True G28446
XR_006250763.1 lncRNA upstream 362437 13516630 ~ 13520457 (+) True LOC122343375
TU41976 lncRNA upstream 369301 13510856 ~ 13513593 (+) True G28312
TU41953 lncRNA upstream 412759 13467404 ~ 13470135 (+) True G28298
TU42246 lncRNA downstream 52797 13992023 ~ 13992800 (+) True G28503
TU42247 lncRNA downstream 52837 13992063 ~ 13992800 (+) False G28503
TU42249 lncRNA downstream 52837 13992063 ~ 13992831 (+) False G28503
TU42486 lncRNA downstream 869371 14808597 ~ 14809661 (+) False G28667
TU42487 lncRNA downstream 869371 14808597 ~ 14809661 (+) True G28667
XM_043237656.1 mRNA upstream 4171 13847292 ~ 13878723 (+) False LOC122343277
XM_043237655.1 mRNA upstream 4171 13847293 ~ 13878723 (+) True LOC122343277
XM_043237657.1 mRNA upstream 40347 13832132 ~ 13842547 (+) True LOC122343278
XM_043237658.1 mRNA upstream 55830 13789644 ~ 13827064 (+) True LOC122343279
XM_043238002.1 mRNA upstream 209185 13669773 ~ 13673709 (+) True LOC122343498
XM_043236608.1 mRNA downstream 41550 13980776 ~ 13982174 (+) True tprkb
XM_043236602.1 mRNA downstream 46291 13985517 ~ 13991772 (+) True trmu
XM_043236603.1 mRNA downstream 46291 13985517 ~ 13991772 (+) False trmu
XM_043236604.1 mRNA downstream 46291 13985517 ~ 13991772 (+) False trmu
XM_043237084.1 mRNA downstream 54904 13994130 ~ 14065681 (+) False celsr1a
TU41881 other upstream 352263 13323288 ~ 13530631 (+) True G28249
XR_006250630.1 other upstream 449288 13405929 ~ 13433606 (+) False vezt
TU41889 other upstream 567210 13305669 ~ 13315684 (+) False G28252
TU41890 other upstream 567210 13305669 ~ 13315684 (+) True G28252
TU41888 other upstream 567210 13313868 ~ 13315684 (+) False G28252
XR_006250622.1 other downstream 46291 13985517 ~ 13991772 (+) False trmu
XR_006250621.1 other downstream 46291 13985517 ~ 13991772 (+) False trmu
TU42431 other downstream 238238 14177464 ~ 14184260 (+) False tbc1d22a
TU42446 other downstream 460803 14400029 ~ 14482821 (+) True tafa5a
TU42445 other downstream 485705 14424931 ~ 14482821 (+) False tafa5a

Expression Profile