RNA id: XM_043236730.1


Basic Information

Item Value
RNA id XM_043236730.1
length 3985
RNA type mRNA
GC content 0.49
exon number 18
gene id scyl2
representative False

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 13446957 ~ 13458895 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATACTGGTACTTACTACTACTTATAAATCACTGTAAttacattagtttttttgtagatgcactttaattgtttgatgttttaaattcaataaaatgaattcaaaactcGCATTCTGtctcttattatttaaaaatatgaatataaatatgacaaTAATGTCTAAGAAATTTGCGAAGCGATCAagtttaaatgatgttttcattAAGCAAGAAGAATATAAGGAGGGTAAATAGTTTTATTACGATTGTTAAGACATAATATTAGGGTCCCAAGATGAAATCTAATAAAAACGGGAGTTGGTCCACagctcatattttgaaaattggGACTTTTATCATCGCTAATTCACGCGCCGAGCGTTTCTTCCGGCTTCGCGGCGCTGAATCTCTCAGGTGTTTTGATGAAGTGTCATGGAGGCTGTTAGCCACCACCACTGCTGACGGTTTCGTTACTGTCTAAATCCCGCTTTTAATCGCTCCACCTCACTGTCAGCTCCCCGAGTGCAAAGGTTGACAGCCGGTGGAACCATGGAGTCCATGCTCAATAAACTAAAGAGCACCGTCACCAAGGTGACGGCTGATGTGACCAGTGCCGTCATGGGCAACCCTGTCACGCGAGAGTTCGAGGTGGGCCGACATATCGCCAGCGGGGGTCCAGGAATGAGCTGGAGGATCTACAACGGCACCAAAAAGTCCACCAAACAGGAAGTGGCAGTCTTCGTGTTCGATAAGAAGATCATCGATCGCTATCAGAAGTTCGAGAAGGATCAGATCATCGATTCGCTGAAGAAAGGAGTCCAACAGCTGACGCGGTTACGGCATCCGCGCCTCCTCACGGTTCAGCACCCTCTGGAGGAGTCCAGAGACTGTCTGGCGTTCTGCACGGAGCCTGTGTTTGCCAGTCTGGCGAATGTGCTCGGCCAGTGGGACAACCTCCCTAGTCCTGTTCCCACAGATATCAAAGAATACAAGCTCTACGACGTTGAGACCAAATACGGCTTACTGCAGgtcTCGGAGGGTTTGTCGTTCCTCCACAGCGGGGTTAAAATGGTTCATGGGAACTTGTGTCCAGAGAACATCATCTTGAATAAGAGCGGAGCCTGGAAGATCATGGGCTTCGACTTCAGTATCTCCTCTAGTAACCCGTCTGACACCGAGCCCAAGTATGTTTGTAAAGAGTGGGACCCCAATCTACCGCCCCTTTGCCTTCCGAACCCCGAATACGTCGCTCCGGAGTACATCCTGTCCGTCAGCTGTGACGCGGCCTCTGACATGTATTCCCTGGGCGTATTGATCCACGCCGTGTTTAATGAAGGCAAGCCTGTCTTTCAGGTCAACAAGCAGGACATATTCAAGAGCTTCAGTCGACAGCTGGACCAGTTGAGCCACCTGAGTCCAGGATTATTGAGTCAGATCCCAGAGGAGGTCAGGGAACACGTGAAGATGCTGCTCAGCGTCACCTCAAACGTGCGCCCAGATGCAGATCAGATGACAAAGATTCCCTTCTTCGATGATGTTGGAGCGATGACCCTTCAGTACTTCGACTCGCTCTTTCAACGGGATAACTTACAGAAGTCTCAGTTCTACAAAAGCCTCCCCAAAGTCCTGCCCAAGCTACCCAAGAGAGTGATCGTATACAGAATCCTCCCGGCGCTCACGTCCGAGTTTGTCAATCCCGACATGGTTCCGTTCGTTCTTCCCAATGTGCTGCTCATCGCCGAGGAGTGCACAAAGGAGGAATACATCCGCCTTGTTCTCCCTGACCTCACACCGGTTTTCAAACAGCAGGAGCCAgtacagATCCTGCTGATATTTCTGCAAAAGATGGACCTTCTTTTGACCAAAACGCCTCCTGAAGACATCAAGAACAGCGTTCTGCCCATGGTGTACAGAGCAGTGGAGGCCCCCTCCATTCAAATACAGGAACTCTGTCTAAATATCATTCCCACGTTTGCCAATCTAATCGAGTACCCTTCCATGAAGAACGCACTTATCCCTCGTATCAAATCTGCTTGTTTACAGACATCCTCGCTAGCGGTGAGGGTGAACTCTTTAGTGTGCCTAGGCAAGATTCTGGAATACCTGGATAAATGGTTCGTCATTGACGAAATTCTACCGTTCCTGCAACAAATTCCATCCAGGGAACCAGCCGTGCTCATGGGCGTTCTGGgCATCTATAAGTGCACTTTCACCCATAAGAAACTGGGCATCCCAAAAGAGCACCTGGCTGCGAAGAGTTTACCTCATCTGGTCTCGCTTAGCATCGATAACAACCTCAACCTTAACCAGTTTAACTCGTTCATGGCTGTGATCAAGGAGATGTTGAATCGCATGGAGGCCGAGCACAAGACCAAATTAGAGCAGCTGCACATCATGCAAGAGCAGCAAAGGAGTTTAAACATAAACCCGATGAACCAATCAGAGGAGACTAAGAACACGCCCAGCCCAGCCACACAAGTCAGAGACATCGATGAGATCTTCGGCGGCGGTTCGGGGAGTGCAGGTGTGAACGGGAAAGAGAACGGTTCCTCATCAACCGTTTCTCAGCCCTCGCGAGTGTCTCTCACCCTGGAAGAAAAGCAGCGTTTGGCTAAAGAACAGGAACAGGCAGCCAAACTAAGAAGCCAGCAGCCTCTGGCTCCACAGAGCGTCAAACCGGCCGCATCGACACctcagGCGAAGGATCTGACCAGCAGTCTTCTGAACAACATGACATCTCTGAACAGCCTCTCTTTGAACTCTGGGACCAGGACGATGCCCATGCAGGGCAGCACTATACCCTCAACCTTCCCAGCTGGACCCACCATGAGTGGAATGGGCACCATGGGCATCAGCAATGGTTTCAACTCTCCCATGGGATTCCAGACGGGAAGTATGGGAATGGGCATGAGACCTGCTGCTCCCAGCCTCTACGGAGGCATGGCCACCACTACTAGCACTCCGAATTTCGGTGCCCTCAGCCAGaaccaaaaccaaaaccaaCCCAGCAAGCCTGCAGACATGTCGGCCCTAGACTCCCTCTTCACTTCTAGCAAACCCAAAGTCAGCATGAACCAAATGGCTCCTAAACCGACCCCGGGAGCAACCGCGCCTTCCCCGTGGCTCAGTCAGTTTGGGCCAGGCCAGCCTTCCCAGAATGCACCCATGCAGGCGACTCCGATGGGGATGACGGGAGTTCAGGGTGGGTTCGGAATGCAAGCAAACCCGTTCTTCAACCCTCAGAACTTCTCGCAACCTGTGGCCTCTTCAACAATGAACCCTGGGGCGATGAAGCAGAGCGCTTCGGTCAGCAACGATCTGAAGGACCTCTTCGGATAAAACTCTTGCCTTTTCGCTCGTGTTTTCCCCCCCCGGAACGGGCCGGAATCAAAACGAAACAACATCAGCAGCGAAGATGACAATTTGGTTGGACATGGCGTCCTTGAAAGACAGTGTTTGAAAAGTTCTGGTttgttttgtcttcatttttttttttttaaccctcatCAATGGTGCACTTATCTTCTCGAGTGAATCGACGGCACCAAACAAAAATCGTGTTTCTACAGAAAGCTCGGGCTCTTCCACCGAAAGCTGCTTTCATCGGTGGAAGCGTCGCATTCGTCGTATCGTCGGATTTGACGCGTGCCCAAGAAGATACAAAAGGAGTCACAAACTCGAGCTCTTTCGGGTTCATTTCCTTTTTGCTTGAGCCTCACGTGCCCCGAAGTGAGTCGACTTCCTCTACCAGAACAAACTTTATCGTTGGCTTCGCTGTTTTGCCGATTCGCGAAAAGTAAAGGAACAGGTGGCGGAGTCCGTAGTTTCGAGCCGGAATGAGCGTTTTTATAATTGTGTACATATATTGTATCTGGTGATTGTTGTTTGATACATGATCcactgaggtaaaaaaaaaaaatcttaggaAGGACGCTGTCTTCATACTGTAGGTGCACTAAATGTAAtagagattttaaaaattatattaaaaaaaatgtaggttttG

Function

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004672 protein kinase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU41946 lncRNA upstream 6935 13437936 ~ 13440022 (+) True G28295
TU41879 lncRNA upstream 72991 13247769 ~ 13373966 (+) True G28248
TU41906 lncRNA upstream 125841 13312934 ~ 13321116 (+) True G28267
TU41894 lncRNA upstream 214974 13231664 ~ 13231983 (+) True G28256
TU41893 lncRNA upstream 216403 13230162 ~ 13230554 (+) True G28255
TU41953 lncRNA downstream 8509 13467404 ~ 13470135 (+) True G28298
TU41976 lncRNA downstream 51961 13510856 ~ 13513593 (+) True G28312
XR_006250763.1 lncRNA downstream 57735 13516630 ~ 13520457 (+) True LOC122343375
TU42167 lncRNA downstream 299072 13757967 ~ 13760112 (+) True G28446
TU42214 lncRNA downstream 369130 13828025 ~ 13828537 (+) True G28486
XM_043236731.1 mRNA upstream 136 13440636 ~ 13446821 (+) True depdc4
XM_043236712.1 mRNA upstream 14270 13423238 ~ 13432687 (+) True metap2a
XM_043236713.1 mRNA upstream 14270 13423255 ~ 13432687 (+) False metap2a
XM_043236708.1 mRNA upstream 24457 13405929 ~ 13422500 (+) True vezt
XM_043236775.1 mRNA downstream 38845 13497740 ~ 13501524 (+) True tnni1d
XM_043236774.1 mRNA downstream 38985 13497880 ~ 13501524 (+) False tnni1d
XM_043236995.1 mRNA downstream 65055 13523950 ~ 13530743 (+) True LOC122342856
XM_043237863.1 mRNA downstream 76229 13535124 ~ 13629281 (+) False iqsec3a
XM_043237861.1 mRNA downstream 76232 13535127 ~ 13632058 (+) True iqsec3a
XR_006250630.1 other upstream 13351 13405929 ~ 13433606 (+) False vezt
TU41889 other upstream 131273 13305669 ~ 13315684 (+) False G28252
TU41890 other upstream 131273 13305669 ~ 13315684 (+) True G28252
TU41888 other upstream 131273 13313868 ~ 13315684 (+) False G28252
TU41815 other upstream 292599 13150756 ~ 13154358 (+) True kin
XR_006250632.1 other downstream 423999 13882894 ~ 13939226 (+) False LOC122342701
XR_006250631.1 other downstream 424014 13882909 ~ 13952425 (+) False LOC122342701
XR_006250622.1 other downstream 526622 13985517 ~ 13991772 (+) False trmu
XR_006250621.1 other downstream 526622 13985517 ~ 13991772 (+) False trmu
TU42431 other downstream 718569 14177464 ~ 14184260 (+) False tbc1d22a

Expression Profile