RNA id: XM_043236734.1


Basic Information

Item Value
RNA id XM_043236734.1
length 4671
RNA type mRNA
GC content 0.49
exon number 34
gene id mybpc1
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 9049521 ~ 9082049 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CCCCCAGATCTGTTCCTTTCTCCTTCACGTTCCTGCGTTGCCCACATCCTAACTGACTTCCAAACTTTCTGGTGCAACTTTCCTCACCTCCGTTTCTCCATCATAACACCCCTTGGCTAAAGGACACCCCCTTGCCACACACTCTGAGCAGCCCAGACTCACCTCCGAACCCCTTCAACTGGTGCCTGGTCCACCGGAGAACGGCTCAACATGCCTGAGCCCACAAAGAAAGATGATGGCCAACCTGAAGAAAATGTTGCCCCAGACTCTGGTGACGCCCCATCTGAGAATTCGGTTGAGATGGCCCCCAAAGAGGCTAAAGCGGCAACCAAAGACACAGAGGCCGTAGTGACTGTCACAGAAGCAGAGGCGACCCCTCAGCCGCAGCCTGTAGTAATTGTGGTGACTGAACTAGAGCCAGTAGAGGGTGAGGTCACAGAGCCACAGCCAATAGTGACAGAGCCTGTAGAGAACGGGCACAGTGAACCTGAGCCGACACAGGCTAAGAAGCATGCCGAGGTGACTGAGGTAAAAGAAGAGGATTCTGGCACATCAAAAAGTCCCGATAAAGATGATGATGTCACCGCCAGCACTCCATCACCTCCACCTCCAGCAGAGGATGGCAGCACTCCCAAGAAACTTTCTATTGACCTTCCTAATGATAGCGACCCTGAGTCAACCAGGGGGAGAAAAGACTCAGTGTGGTCTCTGGGGGACGGACAGCCTCCCGAGGAGATCGACAAACAGATTGAGACTCCGCCGCTCTCAACTCTGTTGATTGAAAAACCTCAGAGTGGTTCCATCAATGTAGGTGGAGACATCACCTTCATTGCTAAGGTGGAGGCCAAAGACTTACTTCGTAAACCAACCATCAAGTGGTTCAAGGGCAAGTGGATGGATCTGGCTAGCAAGACTGGGAAGCATCTGCAGCTTAAAGAATCTTTCGATCGCTTCAGCAAGATTCACACCTTTGAGATGCACATTATAAAGGCGAAGGAGAACTATGCGGGGAATTACAGATGCGAGGTCACctacaaagacaaatttgacAGCTGCTCTTTTGACCTGGAGGTCAAAGaagTCTCGGATGGTTCTCAAAACATTGACATCCGCTCAGCTTTCAAAAGAAGCAGTGAAGGCCAAGACGATGCAGGCGAGCTTGACTTTAGTGGGCTTCTCAAACATAGACAAGGCAGGGAGCACAAGCAAGAGGAAGTTCCTGAGGTGGATGTGTGGGAGATTTTGAAAAACGCCCGGCCTGATGAATATGAGAAGATTGCTTTTACGTATGGCATCACCGATCTTAGAGGCCTGCTGAAAAGactgaagaaaaccaaaaaggaagagaaaaagagtgAAGCATTTGCCAAGAGACTGGAACCTGCTTATCAGGTGGACAAAGGCGGAAAGATCCGGTTAATTGTGGACCTTGCTGACCCAACTGTGGAGTTAAAATGGTACAAGAATGGACAAGAGATCCGCCCTACTCCAAATAATAGGAAGTATATCTTTGAGCACAAAGGCACTCAGCGGATAATGGTTATTAATAACTGTCAGATGAACGATGATGCTGCCTACTCAGTCACTGCAGGAGAAGAAAAGTGCACCACTGAACTGTTTGTGAAAGAACTGCCTGTGAACATACTCAAACAGCTGGAGCCTGTAAAAACCACAGTGAACGAGAGAATTGAACTGGAGTGTGAAGTGTCTGAGGAAGGGGCTAAAGTGAAATGGATGAAGAATGGGGTGGAGGTCCCCACAGGGGTGCGCTCGCGCTACCGTGTGAGAAGCGAGGGGACCAAACACTGGTTGATCATTGATGACGCCTCAAAAGACGACACCGGCACCTACTCCCTGATGGCCACCGGGGGCACGTCTGAAGCTCACGTTCAAGTTGATCTGAAGCCTCTGAAGATTTTAACGGATCTACAAAGCGCGACAGTCTTGTTGGGTCAGCCTCTTAAATTGAACTGTGAGATTTACCCTGGAAACGTCCCGGGCCGCTGGTACAAGAACGGACAGCTGATCCAGCCTAGTGAACGCCTCAGCATTACACACAGAACCAAGAATCACAGCCTTGAAATTGAGAGCTCCACTATTCATGATGCCGGTGACTATACCTTTGTTCCTGAGGGGTACACACAGACGCTGTCTGCCAAAGTGCACATCATAGATCCCCCCAAAGTTCATTTAGAAGCACTGAATGCCCAGGACAACACGGTGACCATTGTAGCTGGAAACAAACTCCGCCTGGAGATCCCTATTAGCGGAGAACCAGCACCCAGAGTGGTGTGGATGAAGGGAGAACGGGTCATCCTTGAGTCAGGAAATCGAGTGCGTGCAGAGACATTTGCAGACCACACCTGCCTCACTATTGATGTCGCAGAACGAGAAGATACCGGAAACTACAAGATCGTGCTTCAGAACGAAGCTGGAGAGGACACAGCTAGTGTTAAAATCAAAGTTGTAGATATCCCAGATCCCCCTGAGGCCCCTCTGGTTACTGATGTGGGTGGAGACTGGTGCACTATGACATGGGAGCCGCCACGCTATGATGGTGGTTCCCCCATCCTTGGATACTTCATTGAGCGCAAGAAGAAACAGAGCTCTCGATGGATGAGGCTGAACTTCGACCTTTGCAAAGAGACCACCTTTGAGCCAAAAAAGATGATTGAAGGTGTGCCATATGAGGTGCGAATCTTTGCAGTTAACGCTATTGGCGTCTCCAAACCCAGTGAACCCTCCAAACCTTTCATTCCCCTGGCTGTGACAAGTGAACCCACAATGCTGGTGGTGGATGACGTCACAGATACCACGGTGACCATGAAGTGGAGACCCCCTGACACCATCGGAGCTGCTGGACTTGATGGCTACCAAGTGGAATACTGCATCGAAGGAACTGACGAATGGATACCTGCTAATAAAGAGCTGATTGAAAAAACGAAGTACACTATAACCGGTCTGCCAGTGGAGGCCAAGATCTTTGTGCGTGTCAAGGCCATAAATGCTGCTGGGGCCAGTCAACCACGCACCACCCAACACTCCATACTGGTCAAAGAGGTCATCGAGCCTCCTAAGATTCGCATACCTCGACACTTGAAGCAGACGTATGTTCGAAAGGTTGGCGAAGTCGTTAACCTCGTCGTGCCATTCGTGGGTAAACCAAGGCCAAAAGTCAATTGGTTGAAGGAGGGTCAGCCGATTGAACAAACCATCAGCATTCGCAACTCAGACTGTGACAGCATCATGTTCATCCGCAAAGCTGAGCGCAAGCATTCAGGAAAATACGAATTGAGCGTACAAGTGGAGAATCATATCGACACGGCCATGCTGGACATCCAGATAGTCGACCTTCCAGGCCCACCACAGGCTGTAAAGATCGAAGAGATCTGGGGGAATAACGTAGCACTGGACTGGAACCCACCCAAGGACAACGGCAACTCACACATAACAGGCTACACCATCCAGAAAGCTGATAAAAAGACAATGGAGTGGTACACATGCATAGAGCACTACCATCGTACCTGCATCACAATCTCAGATCTGGTGGTGGGTAACGAGTATTTCTTCAGGATCTACTCAGAGAACATGGTCGGCTTAAGTGAAAGTGCCACTGCCACGAAAGACAGTGCTCTGATTGTGAAAGAAGGCTTGCATCTGAAAATCCCCGAGTATAATGACCGCGACTTCACCGAGCCGCCTACATTCACTCAGCCGCTCATCAACACCTTCGCCATCGCTGGGTACAACGCCACCCTGAACTGTAGCGTGAGGGCCAATCCTCGGCCTAAGGTAATCTGGATGAAAAACAAGATTATCATCATAGACGACCCGCGTTACCGCATGTTCAGCAACCAGGGTGTGTGCACGCTTGAGATCCGCAAGCCCAGCCCGTTCGATGGAGGTGTTTACACCTGCAAAGCTGTCAATGACCTCGGAGAGGCTCAGGTGGACTGCAAACTAGAGGTCAAAGGAGGTTTTACATTCTTTGAGCTGATGAAGCGAGGCGTTCCCTTACACCTCATTGATAAGTACATGAACGAGTCTAAGACCTCTGAGAAGTCAGAGTCAGAGAAGAAGGGATCCATCTGAGGGCTGACTCCCCCAGTGATTACCCAGAAACCCCTGTCACTACTACAAATAATGGCACATGTGTCTAAACTTTGGCATGGTATGCTGTGTTCAGACATGGATCTATAGTTCTAGAAAACGGCGTCTGTCACTGTGAGATCACGTAAAGCTGCGTTTTAAGAAATGCCACTGGAACTCAAACTGCATGACTTCACTAAACCGGATGGTTGCTTCAAAATATATCACAAATAGACATGTTATTGTGGAAAATCTAGACCAGTCAGTTACAGATATGGTAATGCggttcatttatgttttttctggGTTTGGGAGACGAGGGTAGTCCGAAATGAGCACAAGTCTGGGTTTTGCTGTTTCTCtccttattttcttttcttgtttgattTCCTCCTAAATTTTTCCCAACCCCTTCCCTTCATTCTTTAATGAATGTGCTGAAATCCACTTAGATATGCAATATCAATACTGTGCAACCATCTGAATGCTACAGAAAATGTTGCGGTTGTCTAAGGATACTTGATGATACATGCcaatgttcattttagcatgACAGTTGAATAAATGTCTCTGTATGAAAAA

Function

GO: NA

KEGG:

id description
K12557 MYBPC1; myosin-binding protein C, slow-type

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU40644 lncRNA downstream 25444 9023877 ~ 9024077 (-) True G27425
TU40633 lncRNA downstream 45298 9003923 ~ 9004223 (-) True G27417
TU40451 lncRNA downstream 88088 8960446 ~ 8961433 (-) True G27306
TU40406 lncRNA downstream 161568 8887186 ~ 8887953 (-) True G27279
TU40401 lncRNA downstream 178465 8870491 ~ 8871056 (-) False th2
XR_006250778.1 lncRNA upstream 247958 9330007 ~ 9341739 (-) True LOC122343442
TU40714 lncRNA upstream 416667 9498716 ~ 9504000 (-) True G27469
TU40803 lncRNA upstream 463159 9545208 ~ 9545421 (-) True G27532
XR_006250616.1 lncRNA upstream 465590 9547639 ~ 9552161 (-) True LOC122342618
XR_006250615.1 lncRNA upstream 465590 9547639 ~ 9552158 (-) False LOC122342618
XM_043236750.1 mRNA downstream 690 9042013 ~ 9048831 (-) True chpt1
XM_043237137.1 mRNA downstream 26089 9018330 ~ 9023432 (-) True dram1
XM_043237673.1 mRNA downstream 40217 9004819 ~ 9009304 (-) False klhl42
XM_043237672.1 mRNA downstream 40217 9004819 ~ 9009304 (-) True klhl42
XM_043237538.1 mRNA downstream 49063 8979183 ~ 9000458 (-) False nrip2
XM_043237596.1 mRNA upstream 4495 9086544 ~ 9088361 (-) True spi2
XM_043237598.1 mRNA upstream 7541 9089590 ~ 9092106 (-) True spic
XM_043237597.1 mRNA upstream 15856 9097905 ~ 9100722 (-) True dnajb9b
XM_043237065.1 mRNA upstream 21527 9103576 ~ 9106985 (-) True avpr2l
XM_043237048.1 mRNA upstream 21532 9103581 ~ 9269835 (-) False anks1b
XR_006250745.1 other downstream 40217 9004260 ~ 9009304 (-) False klhl42
XR_006250786.1 other downstream 108250 8894184 ~ 8941271 (-) False LOC122343470
XR_006250788.1 other downstream 108250 8895792 ~ 8941271 (-) False LOC122343470
XR_006250787.1 other downstream 108250 8895792 ~ 8941271 (-) False LOC122343470
TU40311 other downstream 581493 8460506 ~ 8468028 (-) True G27232
XR_006250565.1 other upstream 189923 9271972 ~ 9300179 (-) False uhrf1bp1l
TU40990 other upstream 1273662 10355711 ~ 10357205 (-) False zgc:193726
XR_006250794.1 other upstream 1276375 10358424 ~ 10363566 (-) True zgc:193726
TU41528 other upstream 2340020 11422069 ~ 11424083 (-) False ppfia2
XR_006250735.1 other upstream 2344448 11426497 ~ 11545812 (-) False ppfia2