RNA id: XM_043236768.1


Basic Information

Item Value
RNA id XM_043236768.1
length 5086
RNA type mRNA
GC content 0.51
exon number 27
gene id ppp1r12a
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 11220536 ~ 11275588 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CCCACGCCCCAGCGCGCTGTGTCGGGATAGTGGCAGTATAAAGTATATCTTCCATCCGAGACAGATAAGAAGCGCCAGGCTAGAGGGGATGAAGATGGCGGACGCCAAGCAGAAAAGGAACGAACAGTTGAAGCGTTGGATAGGCTCGGAGACGGACCTCGAGCCGCCCAtcctgaagaagaagaagacgaaggTGAAGTTCGACGATGGCGCCGTGTTTCTGGCTGCCTGCTCCAGCGGGGATACGGAGGAGGTGCTGCGAATGCTCGACCGCGGCGCGGACATCAACTACGCCAACGTAGACGGACTCACCGCCCTGCACCAGGCCTGCATAGACGATAATGTGGACATGGTGACCTTCCTGGTGGAGCATGGGGCCTGCATCAACCAGCCTGACAATGAAGGCTGGATTCCCCTTCACGCTGCCGCTTCCTGCGGATACCTCGACATCGCTGAGTATCTTATCAGTCAAGGTGCAAACGTCGGTGTTGTAAACAGCGAGGGAGAAACGCCATTGGATATCGCCGAGGAGGAGGCCATGGAGGAGCTTCTGCAAAACGAGATCAACCGGCAAGGCGTGGATATCGAGGTGGCCAGGAAAGAGGAGGAGCGGATCATGCTAAGGGATGCACGACAGTGGCTTAACAGCGGCCAGATCAACGACGTCCGGCACACCAAGTCTGGGGGGACCGCACTGCACGTCGCTGCAGCCAAGGGATACACTGAGGTTTTAAAGCTTTTAATTCAAGCAGGGTATGATGTAAATATTAAAGACTACGATGGCTGGACTCCGCTCCACGCTGCTGCACACTGGGGAAAAGAAGAGGCCTGCCGGATACTAGTAGATCATTTGTGTGAAATGGACGTTGTCAATAAAGTGGGCCAGACGGCGTTTGACGTAGCTGATGAAGATATCTTGGGATATTTAGAAGAGCTGCAAAAGAAACAGAATCAGcttctgAGTGAAAAGAAGGATGTCAAGAAGTCTCCTTTAATAGAAACTACGACTACTGGGGACAATAATCAATCTGTGAAACCACTGAAGAGTAAAGAAACACTCCTACTGGAACCGGAGAAGACTGTCCCACGAATCGAGACTCTGGAGCCGGAGAAGGTGGATGAAGAAGAGGGGGAGGGGAAGAAGGATGAGTCTAGCTGCTCtagtgaggaagaggaggaggaagactcAGAGTCTGAGAACGAAGCAGaCAAGACCAAGTCTGTTCCGTCGAGCATTTCGAACAGCACACCTTCATCTGCACCTACTAGCATCACCGTCACGTCCCCAACTACCCCAAGCAACCAGGTGACCACCCCAACCTCACCCACCAAAAAGGTGAGCACACCTGCAGGGAAGGTGTCTCctaaagaggaagagaggaaggaCGAGTCTCCTGCATCGTGGCGGCTGGGCCTGCGGAAAACCGGCAGTTACGGAGCGCTGGCGGAAATCAGCACAACTAAAGAGGCGCAGAAAGAGAAGGACACCGCCGGGGTGATGCGCTCGGCCTCTTCTCCTCGCCTCTCATCCTCACTGGACAATAAGGACAAGGAAAAGGAGAAGGAGAAGACGCGCCTGGCGTACGTCGCGCCGACCATCCCGAGGAGACACGTCAGCACATCCGACATCGACGAGAAGGAAAACAGGGACTCGGCTGCTAGTCTGGTACGTAGCGGCTCGTACACCAGGAGACGCTGGGAAGAAGACCTGAAGAACAGCGACGGAACCGCCTCACAAAACAGAACCTCCAGCTATCAGCGCAGTACGTCTCACACGCTAGCGTTAGGCCGCACGTCTAGCTCTCGCGACCTGCCCGCCAAATCCTCCTCTGCCTCCAGCCTGGAACCTAACAACTCTAAAGCCTGGCAGCAGCCTTCCTCCTACTACCAGTCTTACAGCATTCACCGCagCGGATCGTTTGGAAGGAGGCAGGATGATGCTTTAAGTTCCacttcctcctccacctccacgACGACGACCTCCACCTCCTCGGTTACCTCACCCACCGGACATCGCAGCCTGCTGTCCAGGTATTGGGCAGAAGAGAGTACGgaaaaggagaaggagaaggagaaagagtCGGCCGCGGTCATCCCCACAATCAACACTGCAGCCACCACCACTACCACCTCCACTACTGGAACTCTACTGGGCTCTGACGGACGAGAGAGAcgcagATCATACCTCACCCCTGTGCGTGACGAAGAGTCCGAGTCCCAGAGGAAAGCCAGATCCAGACAGGCACGGCAGTCCAGGAGGTCCACACAGggtgtGACCTTGACTGATCTCCAGGAGGCGGAGAAGACCATCGGTCGCACTCGTCCCACACGGCCTCGAGAAGAGGAGAAAGAAGAGAAGGAGAAACAGGACAAGGAGAAacaagaagagaagaaagagaccGAGACTAAGGAGGATGACTACAGGTCACGCTACCGCAGCTTTGAAGAGaAGTACCGTAGCACCTCCTTGGCCTCGACCACCACGGCCTCCTCCACCCTGCCTTCCTCCTTGTCCAGCAGCTCCTCTTCTCTGTACAGCACCTCCTCTCTGAACCGGCCCAACAGCCTGAGCGGTCTCACTTCCACCTACAGCCGCACCACACGCGACTCTGAGAGAGACTCCgatagaaaagaaagagaggacgACAAGGATGCTGAAGACAAGTCTCAGCCACGCTCTATACGTGACCGCAGACGACCTCGAGAGAAAAGACGCTCGACTGGAGTATCCTTCTGGACCCAGGATAGCGACGAGAACGAGCCAGAGCACCCATCAGATTCAGAAGAAGGCAGCACTAAAGGAGAGCCTCAGAGTGACAGACTATCCAGGTATGACCCTGTCTCTACTAGCACTTCCTCCCTCGACCGTTACGAGTCTTTGAGCAGCCGAGGCATCGGGGAGAGCCGGCGGCCGTACTCTCGCTTCGAAAGAGACGACTCCACTGATTATAAGAAGCTTTATGAGCAGATTTTAGCCGAAAATGAGAAGTTGAAAGCTCAGTTACGTGATACAGAACTGGAGCTGTCGGACCTGAAACTGCAGCTGGAGAAAGCCACACAGaGGCAGGAGCGCTTTGCTGATCGATCACAGCTGGAGATGGAGAAAAGGgaaaGAAGAGCTTTAGAAAGGAAGATCTCTGAGATGGAGGAGGAGCTGAagAATCTTCCTCAGGTAAAGCAGGTGCAGTCTCTGCGTCAGTATAACGAGCGTTTGCAGGCAGAGAACAGGGCGCTGGCCCGCGTGCTCTCCAAAATCACGCAGGGCTGCAGCCACCTGCCCGCCGCAGACCTGTAGACACGCCCCCACCTCCCCTTACACCCCTCCTCATGCTCCATTCAGCTCCGCCCACGCCCATATAAAGaCGCTACCAGACTTGAAAGCAGACAACCAGAGACTAAAGGACGAGAACGGAGCGCTGATCCGAGTCATAAGCAAGCTTTCCAAATAGAACACATCCTCCGGCAGTAACGGTATTGCACATCTAGATATTAACACGAGACAACGGCGACAAGAAGGCTCCGCCTCCCCCCACTCCTCCGTTTCTCAGCCCCCCCCAGCTTTCCCTGGCTTCTCCGCTCCACCTCCTCACCCGCTCACACAGAACCACTGCGTTTACAGAACTAAGGAAAAGCGTTAGACGAGAGACTGGCATCGAACACTTTGCGGGCGGGGAAAGCCtccaaaaaaactatttaaccAATAAGCCTTAGTTGTACATACGTCACTCGCATCCAGTTTCTCTTGGCTGTCACAGAACACCTGATTTTTATTTGtgccacacttttttttttttcttcttcttcttcctcttttgttttgtgctcTATCCTccttggttttattttatgatttcttcttatttttatttagttttgtttagttgttgCTGTCGCGCTCCGCTCTCGAATCTTTCTTCCTGTACAGATGTGTCATGCAGCGTGTGCAGCTCTCTCCTCCCCTTTCCTCCCACCCCGGCGCCAGAAGTCCCGCCTCTCTCGGAGAAGACTAAGCTGGCGCTCGCTCTCTCCGCACACTTCCTCCTCTCTGGACTTTACCGATTTAGGTGGACCTCGGAAGCTTTCACTTACGTGCaatatatgcatttctttctctACGAATGCTTTAAGAATGTTCACTCTTTcgacactttctctctctctcccggtTTCCTTCCCATCTCCCCCCTCGACTTCTTCTTTCTCTCGTTTCTTTGAGTTTGTAGTGTAGTCGTTGGTTTATATCTTGTACTCCTCACGTTGTTTTAGCAGGTACTGAGTGAAGTTGTATATACCTGTATGTATTGTTTGAGACCAGCACATGGCATGCGTTTATGGTTCCCTGTCTGTTACTATTGAAATATACCAACTCCAGAGGACAAAGTGTGTTTTAACTATTTCCTTCTTCTTTTATAGTCGAAAATGTCATTGGATAACAATAGAGCCGCTCTCTTCAAGGAGGGACGGCTGCACGTcttcagtgcattttttttttttttcctctctctcttctcagtTTTAAAAGTGTTCACGGTAATTGTGAGATGATAATATAATTGCttcactacatttcacacattttattcagtatcTTTGGAAGAgtgctgttcattttttttcctatcttttttttgtccttttcctgttttttttgttttttccttctcctttttgttttttttttaagctgtagTATTAGCCAAGGTGTTGTCACTAAAAAGAAGATCCTAGATATTGCTAACCCAGTCCTTTTTACAATGTCTACATGCACTGTCAATGCCATGTCGGGAGTCTTGCTGTCCGGTTTAGCGAACTTTTGCCACCGCGTCAGATGAAGTCCATGCATCGGAAACACGTTTTATGCATTTCAGTGGCCTTTTACTTAAAATACTGTAGTTGGAAAAAATGTCGCTGTAGTTGGACTGTCAGCTGTCTCCTCTTTGGTTtaggtttttaataatttttttttttttttttttaaatttcccaTCATCTTGTAAAATAGATGTGTGGCTTCATCCGTGCAAGCTGTGCTGTGACTACCAACCACTGagagttaattaaaataaacttgtaCATTGTAAAAATC

Function

GO:

id name namespace
GO:0035507 regulation of myosin-light-chain-phosphatase activity biological_process
GO:0030155 regulation of cell adhesion biological_process
GO:0051017 actin filament bundle assembly biological_process
GO:0001889 liver development biological_process
GO:0072357 PTW/PP1 phosphatase complex cellular_component
GO:0005737 cytoplasm cellular_component
GO:0071889 14-3-3 protein binding molecular_function
GO:0019208 phosphatase regulator activity molecular_function

KEGG:

id description
K06270 PPP1R12A, MYPT1; protein phosphatase 1 regulatory subunit 12A

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU41466 lncRNA downstream 63792 11126502 ~ 11156744 (-) False G27974
XR_006250620.1 lncRNA downstream 288135 10930597 ~ 10932401 (-) True LOC122342624
TU41414 lncRNA downstream 500252 10714630 ~ 10720284 (-) True G27940
TU41416 lncRNA downstream 503926 10714630 ~ 10716610 (-) False G27940
TU41375 lncRNA downstream 560562 10649898 ~ 10659974 (-) True G27910
TU41512 lncRNA upstream 139512 11415100 ~ 11419364 (-) False ppfia2
TU41527 lncRNA upstream 146481 11422069 ~ 11422586 (-) False ppfia2
XR_006250738.1 lncRNA upstream 342862 11618450 ~ 11648423 (-) True LOC122343274
TU41543 lncRNA upstream 377884 11653472 ~ 11654940 (-) False kmt2e
TU41551 lncRNA upstream 410144 11685732 ~ 11688800 (-) True G28029
XM_043236690.1 mRNA downstream 7238 11165268 ~ 11213298 (-) True pawr
XM_043236692.1 mRNA downstream 534585 10676477 ~ 10685951 (-) False ints13
XM_043236691.1 mRNA downstream 534730 10676477 ~ 10685806 (-) True ints13
XM_043236648.1 mRNA downstream 575283 10642538 ~ 10645253 (-) False napepld
XM_043236210.1 mRNA upstream 20708 11296296 ~ 11298238 (-) True rps16
XM_043237566.1 mRNA upstream 62753 11338341 ~ 11376262 (-) False lin7a
XM_043237567.1 mRNA upstream 62753 11338341 ~ 11376261 (-) True lin7a
XM_043237619.1 mRNA upstream 139132 11414720 ~ 11573766 (-) False ppfia2
XM_043237620.1 mRNA upstream 139132 11414720 ~ 11573766 (-) True ppfia2
XR_006250794.1 other downstream 856970 10358424 ~ 10363566 (-) True zgc:193726
TU40990 other downstream 863331 10355711 ~ 10357205 (-) False zgc:193726
XR_006250565.1 other downstream 1920357 9271972 ~ 9300179 (-) False uhrf1bp1l
XR_006250745.1 other downstream 2211232 9004260 ~ 9009304 (-) False klhl42
XR_006250787.1 other downstream 2279265 8895792 ~ 8941271 (-) False LOC122343470
TU41528 other upstream 146481 11422069 ~ 11424083 (-) False ppfia2
XR_006250735.1 other upstream 150909 11426497 ~ 11545812 (-) False ppfia2
TU41650 other upstream 739043 12014631 ~ 12015767 (-) True G28093
TU41785 other upstream 1206332 12481920 ~ 12489156 (-) False cpm
TU41786 other upstream 1206514 12482102 ~ 12489156 (-) False cpm