RNA id: XM_043236774.1


Basic Information

Item Value
RNA id XM_043236774.1
length 1988
RNA type mRNA
GC content 0.40
exon number 9
gene id tnni1d
representative False

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 13497740 ~ 13501524 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GAGCTTTTTTTGTAAGACGTCGACGCACGAAGGAGCCTCAGCAGCAACTAAAACGAATTTTAccgtatgcatttttttattttttgtgcactAATGAATGAAGTCATCAGTAGCTTGCCGctactaataatttaaaaagtaccaCAGCGACAAACAGCACAAGAAAACACCTTAGAATTGAACACACTCCCTACTGATAACAGCAATATTATATGGAAGACAGATAACTATATGGGACAACATCCTCACAATTTACTCTATGATGTTTTATCATTTACCTCAGACATTGTTTTCCTCTTCTGATCGTGACTCAAGAGCACAGGCTTGCTATCTATACGTGGGCCGAGACCCGTTGAGGAACTATTTTAAGAGGCTATATCCCGCATGTGAACGAGTCAATATTTCGCGAGTACAATGTTTGCGTTTACGAACTCAAGCCCAAGCCAGAGAAAAGCCATCGTGCGTTCTTATGTATTGCTGTGTCGTCACAGGTTTGCTGTTGGTAGTATTTCATTTGTAGAACACTGCCAAGCCATTCCTGGCGACAGACACTATATCTGCCAGCCAGTGGTGGCTGGACTATAAAATCCCTTTGTCTCAACACCCTGTTGTTCTGCCTCTTGTCCGCGACCATCAACCAGGTTTCATCTAAAATCTTTGGTTGAAACAATCTTTTTAGTAGTTCAGCAAGACGGCAAAATGGGCGATCCGATACGAAGGCCTGGAAATCCAAAAGTGGACAACAAACCCAAGTCGAAGATTTCAGCATCTCGAAAACTTTCTTTGAAGATAATGCTTCTGAACAGAGCCATAGAGGAtctggagaaagaaaaacaagacaggGAAGAAGAGAAAAATCGCTACCTCACAGAAAAACACCCTCCTTTGCAGATTTCTGGGCTCTCTCTGGCAGAGTTACAGAATCTGTGTAAGCAACTCTATTCCAAAATAGACGTAGTGGATGAAGAGAGGTACGACTATGAGGATAAAgtcaaaaagcacaacaaagatatcaatGAGCTTAAGTTGAAAGTTCAGGATTTAGGCGGGAAGTTCAAGAAACCTGCTCTGAGGAAGGTGCGTGTGTCTGCCGATGAGATGATGAGGGCATTGCTGGGCTCCAAACACAAAGGCTCCATGGACCTCCGTGCAAATCTGAAGTCAGTCAAAAAGGAGGACATTAAGCAAGAAAAGGTCTTGACCTCTGAGGTAGGTGATTGGCGTAAGAATGTGGAAGCCATGTCTGGAATGGAGGGAAGAAAGAAGATGTTTGACGCCGCTGGGGGAGGCCAGTAAACCCCTTTGTTGAACCGACCTGACCTTCTGGCTGGTCTTCACCGAGAAGATATAAAACGGAAAGAATGAAGCTAAAGAGTTTTGGCTTTGACCTTTCTGAGCTGCTGTTTTTCCGAGCCAACTCATAGTAACTGCTAAGTAATAAGTCGACATAGGAAAATATAAATCCTGCGATTATCTTCTCACCTTTTAGTTGATTTAAAGCTGAATTATGTTCTGGAACACATACTATTGACGCTGCTCACATTCTTATCCATAAAAGTAAATAAGGGGCTGTCAAGATCTAAAAAGTCCCATCAAAGTACATCCCATGATCTAAatttcaagtcttctgaagctaaGAATTTTTGTCATGATGCTTTCATTTGGAGTTTGACGACCCCTAACCAAAATGTGTCTTCATTCTGTGGAAAAATAATATGTGAatgatgttttttcttaaaaatataatttgacagATCTCCATGAAAGACTAAAGTGCAGACAAAGACATAAGATAGGCCTTAGTAATTTTTAGGTGTTTTTGAGACTTCCGTCTGCagccatttcatttcattataaatgtatcagataatattaatagtaataataataaaaaatggcaTATGTTTGACTGggatatatgtatgtttttgtgtgttacaATTAAGTCTTAAATTGACATTAAAAGTTACATTATTAAGCCAAAATAA

Function

GO:

id name namespace
GO:0005861 troponin complex cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU41953 lncRNA upstream 27745 13467404 ~ 13470135 (+) True G28298
TU41946 lncRNA upstream 57858 13437936 ~ 13440022 (+) True G28295
TU41879 lncRNA upstream 123914 13247769 ~ 13373966 (+) True G28248
TU41906 lncRNA upstream 176764 13312934 ~ 13321116 (+) True G28267
TU41894 lncRNA upstream 265897 13231664 ~ 13231983 (+) True G28256
TU41976 lncRNA downstream 9332 13510856 ~ 13513593 (+) True G28312
XR_006250763.1 lncRNA downstream 15106 13516630 ~ 13520457 (+) True LOC122343375
TU42167 lncRNA downstream 256443 13757967 ~ 13760112 (+) True G28446
TU42214 lncRNA downstream 326501 13828025 ~ 13828537 (+) True G28486
TU42246 lncRNA downstream 490499 13992023 ~ 13992800 (+) True G28503
XM_043236729.1 mRNA upstream 38985 13446957 ~ 13458895 (+) True scyl2
XM_043236730.1 mRNA upstream 38985 13446957 ~ 13458895 (+) False scyl2
XM_043236731.1 mRNA upstream 51059 13440636 ~ 13446821 (+) True depdc4
XM_043236712.1 mRNA upstream 65193 13423238 ~ 13432687 (+) True metap2a
XM_043236995.1 mRNA downstream 22426 13523950 ~ 13530743 (+) True LOC122342856
XM_043237863.1 mRNA downstream 33600 13535124 ~ 13629281 (+) False iqsec3a
XM_043237861.1 mRNA downstream 33603 13535127 ~ 13632058 (+) True iqsec3a
XM_043237862.1 mRNA downstream 33605 13535129 ~ 13632058 (+) False iqsec3a
XM_043237998.1 mRNA downstream 164135 13665659 ~ 13669633 (+) True LOC122343497
XR_006250630.1 other upstream 64274 13405929 ~ 13433606 (+) False vezt
TU41889 other upstream 182196 13305669 ~ 13315684 (+) False G28252
TU41890 other upstream 182196 13305669 ~ 13315684 (+) True G28252
TU41888 other upstream 182196 13313868 ~ 13315684 (+) False G28252
TU41815 other upstream 343522 13150756 ~ 13154358 (+) True kin
XR_006250632.1 other downstream 381370 13882894 ~ 13939226 (+) False LOC122342701
XR_006250631.1 other downstream 381385 13882909 ~ 13952425 (+) False LOC122342701
XR_006250622.1 other downstream 483993 13985517 ~ 13991772 (+) False trmu
XR_006250621.1 other downstream 483993 13985517 ~ 13991772 (+) False trmu
TU42431 other downstream 675940 14177464 ~ 14184260 (+) False tbc1d22a

Expression Profile