RNA id: XM_043236781.1


Basic Information

Item Value
RNA id XM_043236781.1
length 4585
RNA type mRNA
GC content 0.47
exon number 17
gene id zdhhc17
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 343592 ~ 360922 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ACGCGCGCTTCTCTCCTGTTTATCGCCCCCTAAACGTTTTTCCCGTGATGCTCCGCGCGGTCGATCGGCAAGATGGCGGACGCTCTGGACGAATTTAAGAAAGAAACTGGATGCGTCCCGATCCTCCATCCCGAGGAAATTAAACCCCAGAGTCACTATAACCATGACTACAGCGAGAGCGTCAGCCGCAAGAGCCACGTGGACGACTACAGCACTTGGGACATCGTCAAAGCCACCCAgTACGGGATCTTCGAGCGATGCCGTGAGCTGGTGGAGGCCGGATATGACGTGCGTCAGCCGGATAAAGAAAATGTCACACTCCTGCACTGGGCGGCAATCAACAACCGCATAGACCTGGTGAAGTACTACATATCTAAAGGTGCCATAGTGGACCAGCTGGGAGGAGATCTCAACTCTACACCGCTTCACTGGGCTACAAGACAGGGTCATCTCTCAATGGTGGTGCAGTTAATGAAGTACGGCGCTGATCCGTCTCTCATCGACGGCGAGGGATGCAGTTGTGTGCACTTGGCCACTCAGTTTGGACACACCTCCATTGTGGCGTATCTCATTGCCAAAGGACAGGATGTGGATATGATGGATCAGAATGGCATGACCCCTCTGATGTGGGCGGCTTATCGGatgcacagTGTTGACCCGACACGGCTGTTGCTGACATTTAACGTGTCGGTGAATCTGGGTGATAAGTATCATAAGAATACAGCTCTGCACTGGGCGGTTCTGGCTGGAAACACTACCGTCATCAGCCTGCTGTTGGAGGCCAACGCTAATGTCGACGCACAGAACATCAAGGGGGAGACGCCACTGGATTTGGCCAAACAGAGGAAAAATGTGTGGATGATAAATCATCTGCAGGAGGCCAGACAAGCCAAAGGCTACGACAGTCCCTCGTACCTAAAGCGGCTCAAAATGGACAAGGAGTTCAGGCAGAAGGTGATGTTGGGAACTCCCTTCCTGGTGATCTGGCTGGTGGGATTCATCGCTGATCTGGACATCGACTCCTGGCTCATCAAGGGTGTGATGTATGCGGCGGTGTGGCTCGTGGTGCAGTTTCTGTCCGAGTCATTCTTTGATCACTCCATGCACAGTGCTCTTCCTCTGGGCATCTACCTAGCCACTAAATTCTGGATGTACATCACCTGGTTTTATTGGTTCTGGAATGATCTCCCTTTCGTCACCATCCACCTGCCCTTCCTGCTCAACAGTCTGGCTCTCTTCTACAACTTTGGCAAGTCCTGGAAGTCCGACCCCGGTATCATCAAAGCGTCCGAGGAGCAGAAGAAAAAGACTATAGTTGAGCTGGCAGAAACGGGCTGTCTGGATCTCAGCATATTCTGCAGCACCTGTTTGATACGGAAGCCAATCAGATCGAAACACTGCGCCGTTTGCAATCGATGCATCGCCAAGTTTGATCACCACTGCCCGTGGGTCGGCAACTGCGTGGGAAGTGGAAACCACCGTTACTTCATGGGCTACTTGTTCTTCCTGTTGTGTATGATTTGTTGGATGATATACGGATGCATTTGCTACTGGAGGATTCACTGTGCTACCAGCTACACTAAAGACGGCTTTTGGATCTACATCACCCAGATCGCCACCTGCTCGCCGTGGATGTTCTGGATGTTCCTCAACAGCGTGTTTCACTTCATGTGGGTCGCCGTGCTCATCATGTGCCAGCTGTACCAGATCGCTGTTCTGGGCATCACTACAAACGAGCGCATGAACGCCAGAAGATACAAGCACTTTAAAGTTACAGCCACGTCCATTGAGAGCCCTTTCAAtCACGGCTGCATGAGGAACCTCATAGATTTCTTCGAGCTGCGCTGCTGCGGTCTGCTGCGGCCCGTGGCGGTGGACTGGACCTCGCAGTACACAATAGAGTACGACCAGACGTCCGGCTCAGGATACCAGCTGGTGTAGCCACGGAGCGAGAGGGAGAAGAGGGGAAGTGCTGCTCAAACCGGGACCATCTCCTTCACCGAGACTGCAAACCTCACCCAGTCAGGATAATAACGCATGCTGTCATTGGTTACCGTCACCAACTCCACCCGCCCACTGCACCCGAGACGCAGGGACACGAGgaacaggaagaggaggagTTCAGTGCCATCAGAGGCGGATCCTGGATTGGTCAGCAGAGACGTTTTGTGTTTCGTTTCGCACATCGGCTGCTTTTCGTTTTTTCACCTTGGTTTTCTTCCTGTGACCCCTTTCTTGTTACGATATCGGATCTCCGCCGCGGAACTTCGCGTAGGAACGAGCGTTAGCATAGCAAAAGCGTTTGCGGGATCGTTCTGGACTAAATTAGACTTTTATTGTTGTTCGTTCGTCCtcgcgtcgcgtcgcgtcaAACTTTCGTGATTTGACTTTCTCAAGTGGAACgcaaaaggagatatttagaAGAAAGTTCAGGCTGCTTTTTTCCGTGCAAGtagaaagatgttttttttgtgtgttctgcAGAGAAAGCAACGCGCGTCAGTTTGAAACGACGTGATGGTTAGTAAATAACGATTCCTTTAAGCTGCCTTGATTCGTCTGATCGTGAATCGGATCAAAACAGGCATGCGTTCATACGACTAAAGAGATGCCCTGTTTATATAATGTGacttaacatatttattttaacctaTTTATGTAGTATTTTTCGAAGAGTAATTAATGGAATCACGAGGTCTTCATTTCAGCATATATGTACGTTTGCAGCATGTTTAATAGTTTAGCTGGGGCGAATCAAGAAGACGAAGCCGGGTCACGTCTCACccgaaaacatttttagttggAAGACACGCTTTTGCAAGTTGTTATCATTCgataaatcaaatgcattttctgcGTAATTCTCATTACCGTCATGCACAGAATCCATATTACTGTACTCAGATATCgaagtatttatattatactgcctttaaattatgctgtttttttatcattgtattATAGCCGTTGTTTAATGCAAAACTGTATTACAACAGAAACACCCGAACGCATTCTGGTAATGAGCAGCAGTCAACATTTAAAACTATCAGCAAAATTGtctcaaaacataaaaccaagATGTTTTGAGcctttttgatccactttaaatgttgactactgtatgtatgcgataaataaacacacacatctcaaaTGAACTATGTATTTTTGCGCGCACACATAATTTGTTCATTCCacgtttcgttttgttttttaagcgTGTGACCGGTTCCGTAAAACGTGTTTCCCATTTAAGCCCGACTTCTCTTGAACTTGACCCGGCTTTGGTCGTTTCACGAGCAGGTTCTTGATGCGTTCGCGAGATTAATCCAGGTTCCCTCCGCATTTACAAGAAATAACACGCTCGTATGTGAACctctatatttattatctatgaGTAGTTTTAGGAAGCGTATACATTTAAAGTTGAAATGCTGTTGAAAAGCCATTAAGTGGATCTGATAGCTGTATGAACTTAAAGGAAGACGCCGTTTAACACGCCTGAGGGGCTCCTTCCGtctttcacctttttttttttgtgtggcgGCGACATTTATTCGTCTGGCCACAACAATGCactgatcttttttttgttgttgttgttgttgtcgtgTTTGTTTGGTTCGCCGTTACTGAAGAAGCGAGCTCGTTTTCCCCAGCGTCGCCGAGGGATCTTCATGTTTACGTAAATAGAGGAAGCTCCTCCCCCCTTTGCTCTCCTccatttcctcttcctgtcGGCGTGGCGTTGTCATGGCAGCGGCTGACAGGACGAACTGATGTAAAGAATGTGCATCTGTACATAAACGGACTAGATTCATTATTCTGTGAGTGActtttgttggggttttttttaattttcgtCCGTGTTAGTTGAAGCTgctcctgattttttttttatgtcttacCAAAAAgcgaaaaaccaaaaaaaatcgaCTTATCAAAGTGTATGACTGTAGCTTTTAGTGGCGTCTGGCACCGCTGTGTATAGACCTTTGACCTTGCAAGCGTCCACTGCATGTGTAAAGCCTGGACATAGTGATCACCCTGTCGCCCGAAAGACGCCCCGTCTTGTAAATAGTGAATGTTCAGTATTTGCaactggggttttttttccccttccctTTTCAgttggtttttacattttaaacccGATGTGTGTATCGTTCTCGTGTGTCCCTCATGCTCCGGGGCCGACCGGAGCTCTGCAGATGTATTATATCTGAATGTCCCATTAATATTCAGCCTAAAAGGTTTCTTTTGTACGTTTCGTTGCTGGGTTTGTTGTACCACTGGATGTACAAACTGTAAATGCGAGAGAAGAAGTAGACGTGAGCAGATTAGGCACAGTGAcggtcattcattcattcattcacgtGACACTGTTTTTAGAGAATATATTCACTCTGTTGTTCCTCTGCCTTTACGGTTCGGCCGGCTGTTTTCCCACCATGTGAAAAGCACATGCTCATCTCCAGTGCCTCAGCTGAGATCAGGACGTCACCCTACTCTGCTTCAGATGTAACTTATTGGGCATGGTTCAATTTTAAtggctttattaataaaacattcgAAGGTGAAA

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016021 integral component of membrane cellular_component
GO:0016746 transferase activity, transferring acyl groups molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K20032 ZDHHC13_17, HIP14; palmitoyltransferase ZDHHC13/17

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU36629 lncRNA upstream 28026 253265 ~ 315566 (+) False G24594
TU36621 lncRNA upstream 60751 242566 ~ 282841 (+) True G24587
TU36619 lncRNA upstream 61608 215975 ~ 281984 (+) False G24586
TU36617 lncRNA upstream 61608 279999 ~ 281984 (+) True G24586
TU36620 lncRNA upstream 61608 279999 ~ 281984 (+) False G24586
TU36676 lncRNA downstream 1520 362442 ~ 362768 (+) True G24628
TU36679 lncRNA downstream 11452 372374 ~ 372853 (+) True G24631
TU36684 lncRNA downstream 13636 374558 ~ 374844 (+) True G24633
TU36685 lncRNA downstream 15003 375925 ~ 376208 (+) True G24634
TU36686 lncRNA downstream 18281 379203 ~ 379444 (+) True G24635
XM_043237775.1 mRNA upstream 130433 205505 ~ 213159 (+) True LOC122343357
XM_043237774.1 mRNA upstream 144056 195092 ~ 199536 (+) True glipr1a
XM_043236793.1 mRNA upstream 150109 184716 ~ 193483 (+) False cmah
XM_043237828.1 mRNA upstream 236287 90208 ~ 107305 (+) True frs2a
XM_043236239.1 mRNA upstream 254440 87026 ~ 89152 (+) True yeats4
XM_043236911.1 mRNA downstream 73421 434343 ~ 439352 (+) True gpr22a
XM_043236912.1 mRNA downstream 73421 434343 ~ 439352 (+) False gpr22a
XM_043236913.1 mRNA downstream 76261 437183 ~ 439352 (+) False gpr22a
XM_043236972.1 mRNA downstream 499674 860596 ~ 863551 (+) True LOC122342832
XM_043236966.1 mRNA downstream 506274 867196 ~ 888759 (+) False LOC122342829
TU36656 other upstream 48523 293235 ~ 295069 (+) True G24609
TU36577 other upstream 258630 83688 ~ 84962 (+) True G24555
TU36680 other downstream 12605 373527 ~ 373824 (+) False G24632
TU36683 other downstream 12605 373527 ~ 374082 (+) True G24632
TU36860 other downstream 293170 654092 ~ 665530 (+) True G24771
TU37077 other downstream 927390 1288312 ~ 1291224 (+) True ndufa5
TU37269 other downstream 1309590 1670512 ~ 1672959 (+) True LOC122343488

Expression Profile