RNA id: XM_043236802.1


Basic Information

Item Value
RNA id XM_043236802.1
length 5277
RNA type mRNA
GC content 0.45
exon number 14
gene id usp6nl
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 12492354 ~ 12536326 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GGCTGTGAAGAataaacgagagagagagagaagaatagAGTAGAGCCGTGTTATACAGCTTGCCCTAGCTGTATTGATTCGGATGCCAGAGACTgcgatagagagagagagagaagtgtaGCCACTTTTTCAGATGGTCTCTCCTAcctgacacacaaacatactGCGGTTAcaggagagagtggacagtgtCTATCTGCGAAAGAGTGAAATAAACGAGAAGAACCGCAGATGCCCAACTCCGCTTGGAAGAAGACCGTGTGTGAGAGGCAGAGGCAAGCAGCGAGAAATgatgtgaggggaaaaaaagacagacgCGGACCCTCGTGTTTGGACCGGCGGGACCTGGATTGCAGAAAGCAAATTCTGCAGGATTCATTACCGATTTCAGCCCGCGACACCGCTCCTCAACGGATTCGATGCGGTTTATGAAGTACAGAAGAAGACAGAAACTGTGTTTTGGATGCTGAATAATATATGGCATGATTTATTAATGTGCTATGAATTAGTAGTGTGTTTTAATTGGTCTCGCCGACCGAAGCTGCCTTTTGGATTTGTTTCATGCTGAAAATCGAAGGAAGAAATTGGAAACTAACGTAAAAGACACGAGGCTGACATCAGAGATGGTGTAAGGGGAGAAGACGGCTATTTTTCTACTCACTCTGGTGGCTGTAGAAATAGAAATACCACTTTTCTATTAGAAGAACcaatctgcttttttttatgGAGGCCTTGGCTGCTTATTTACTCTTGAACATGTATTAGCAGGAACAGCCTAAAAAACAAATTTCGAGCTAAAGATTTATtcgattttattatattttgtcattttaatagaaaaaaagggTTTTCAATTCAAAGGATTTACCAAGATGGCCACCAATTAAACCAGAGCGGCGGTCGccctaaataatatttagtgaCTAAATTCAGTCTAGTAATGCTATTTTCAGTGGTTTTTGTGTGTGGGTGGCGAGAATGAAGTTCTTCACACTTTGTTCTGCATTGGCTCCTCCCCCCGCCACACCTTCTGTTCACGCCTCGGCCCCGCCCCCTTCCGATCATGCAAGTGCTGCAGATTGTTAAGGAGCTGGTGTCGCCCTCTCGCCGTCGCGCCAGTAGCCGATTCGCAGCGACTGATTCAGAGCAAGATGCCGCAGTGAAGTTGGAACAGGAGCGAGCTGAGATACTCGCCAAATATGACAAGGGTAAAGAAAGTGCGGAGGTGGAGCCGTGGGAGGAGGCCAATTTTGATCTGTACAAAGCGGTGGACCGCTTCGGATTCCTGCATGAGGATGAGCTTCCAGTGTATGACCTAGTGGAGGAAAAGCAAAAACATCTGGAAGTGGAGAGAACGACAAAATGGCTGAAGATGTTGAAAAGCTGGGAGAAATACAAGAACAGCGACAAGCTGGTGAGGAGGATCTATAAGGGAATTCCGCTGCAGCTCAGGGGTCAGGTTTGGTGTTTGCTGCTCGACATCCCCAAAATCAAAGAGGAGAAAAAGGACTACTATGAGAAACTGAAGATAAGAGCCAGGGGTTTGTCTCCAGATGTCCGTCAGATTGATCTGGATGTGAATCGTACATACAGAGATCACATCATGTTCATGCACCGCTATGATGTCAAACAGCAGGATCTGTTTCATGTGCTCACGGCGTATTCGGTATATAACACGgaggtGGGCTATTGTCAGGGCATGAGTCAGATCACTGCTCTGTTACTCATCTATATGAATGAGGAAGATGCTTTCTGGGCTCTGGTCAAACTGCTGTCTGGACAGAAACACGCCATGCACGGTTTCTTTGTCCCAGGGTTCCCTAAACTCATGCGTTTCCAGGAGCATCACGACCGTATCCTGCAGAAGATGATGCCTAAGCTCAAACAGCATCTGGATAATCAAGAGGTGTACACCAGCCTGTATACTATGAAATggttttttcagtgtttcttggATCGGACTCCATTCACGCTCACGTTGAGAATATGGGACATCTACATTCTGGAAGGAGAGCGAGTTCTGACGGCAATGTCTTACACCATCCTCAAACTCCACAAAAaaACCCTCTTGAAGTTGTCCATGGAGGAGCTGGTTAAGTTTCTGCAGGTGACTCTATCAAAGGATTTCTTTTTTGAAGATGACTTTGTGATAGAGCAGCTTCAACACTCCATGTCTGAGCTCAGACGGTCTAAGCTGGAGCTGCCACCTCCAGGTAAGGAGGATGAGTTTCCTAAGAAACCATTAGGTCAACTTCCTCCTGAACCTCCAGGATTGGCAAATCATGTGGCTAACGGACAGCCGGTCGGGAAGAGAGTTGAGGGCCTTCCCCCTCGTGGTTCAAGCCCTGCCGCGAGCGTCAGTAAACAAGCAGAGACTGATAGAACACCAGAGAGGTTCCAAGAAAGTCGGCCTCCCAGCTCCTTGGACAAGGTGCATCATCCAGATAAGAACAAGAGGGATGGACGAGGTGTGGACAATCAAAAGGAACGGGCCCCGATCCACAGCAGCGCAACAGCTGGCGGAAGGGTGCTGATCCAGAACCAGTCGAATCACAACTCCAATGCTAGATCCAGCATGCGCAAGGACATTGGACCTCGTTGGGTCAAGCCTTCAGAAGGCAAACTGGAAGCAGTCAAGGCTGCAGCACTTCGGGAAAGTCAGTTGAGTCTAACTATGGGTGTTCCACCCTCGCCCAGCTCCACTGCTCCAGAGGAGGCAACCGGGGCACAGCACCGACCCCGTTCACGAGCATTTGTTCCAGGCTCCAACCGCGCCTCAAACGCCTCGCAATACGACAATGTCCCAGGCCCGGACGGAGAGGTTATGGAGATCATAGAGCTCGAGAAACCGCCTTCTCGCCCCCCGTCCCGACCGTACGTCGGACCTTCTTTGAGACAGGGCAGTCCCACCCGTCCCCCTAGCGATGGAACTGGCGTCTCTCCCTTTCGAATCCCCAAACAGAGCAAACAAGAACCCCGTGCACCTTTGCACTACCCACCTGGCATGACTCCTGTTTACGCTCCCTACGTTCAAGATTCTCGGCCCGAGGACAGACTATACGGCTCACCATATGCCGAGCAAATTTACGCAACTACGGGTCGTGGCTCATCTAACCCTTCGCCGGAGAAAACGCTGATGAACAACAGCTACTTAACCTATCGACGGCCACCCACAAACGTGACCCCTCTCAGGGTCGCTCCTGCAGAGTTTTCATCCCAGATAGACAGCGTTGGCGAGGGAGGGTATTACATGCGACAACCCACCCGACTGATGGGCTCTCCGGCTTACCCGCCCACAGAACTGCGTTATGAGACAAACAAGCGGAGAGAGGGCTGGTATGGGGACGTGGAGGCGGGGCTTCCACGATCTCCTGTGGGACTACCTCGATCTCCCAGCTTTCAGAAAGCTCAGCTCTCTCCCATTCACCTCGTTCAGGAGTTTAACTTCCCCCCTGCAAATATCTCGGAATCTGTGCTCCATTTCAGAGGACCCTACCAAGAGCACTCTGGCAGGCAACAGCTCCCCCCGCTGTTCGGAGGAACACACTACAGGCAGGCGCAGGAGGCCTTTGCAATGCAAGAGTCCATGCTGCTCTAAAAGGGACTATAGAGGGATACACTTGGCTAGCAAGCAGTTTTGTgttggttttgtgtttttgtttgtttgttcgttctTTTGTCTGGTAAGTCTTACTACACAAGAGGTGCCAGTTTCAGGCATTTGTACCGATCAAAGACTGACTGAAGAATTTACTATTGCttttgtttgtacattttcatcCATAGAATAACCATTAACTGCCGAAGTGAGTAATATAACAAAGCTTAAACGTGCaaagagatatttttgtttgtttgtttgtttctttggttAGCACACTGAGATATTTAAATAGAGGGTTACGGAGAGTCTTTTTCGTATGGACAAACTCAGTTACTGATCAATTatcatctatttttttaatgcgttTTAGACATAAGCATACTTTTAGAGGACACTTTATTCCTTgattgtgaatatattttttaagaacaaagaTTTGTGTAGGTTagatactgtatgtatattacaaataacTAACAGTGAACTTAATCGCTGTTGGACAGAAGATTTCAATGCATCACTACAGTGTTCAAGTGAAAGTAAAAGTTTGTAAGGCTTGTTTTTTGAggttatactgtatataaaatgcaGGTATTTAATCTTAAATTGAAAGGGGGTTCTCATATTTTCAGTTCATCGAGGTAACGGATTAAAAACCGACAAGACCCATCTGATACCGGAGCTTAATGAAAATTATGAAAGCTGCCTCGGATGTGCCCGGCAGAATATTACAACACTGTTTTACTGTCAGTAGCAGAGACGTCTGTAACAAAGcgtgaatttaaataaattgggACGGTTGAAGTGGCCCAATTTATCCAAATTCATCTACAAAATGTCTGTCCGTGATGCCCAGTGCAAGTTATGCAAGTAGTTACCGACTCACAAATCCGTTCAATAATACGGCTGGTAGTTTGTAGCATGCAGATGATACGTAAAGCTGGTTGTACCTGTGCTGTAACTCAGTGgaattctttaaacaaaaaaaatcaactttttttacaaaaaattatcGAATTTCAGTTTCACAAAAAGCACAGGTTTTATATGTTACAACAAAATTAAGCTTAACGTCTCATCGAAGATCTGTTGGTAAATTTTCCAGTCCACATTTTTTTTGGGATTATCCATCTGCATAGAGCCTTTACCGGCATTGTTTCTTCCAAACACATGgacatgagatttttttttgttaatctttttctttttactctgTTTCGCTAAACATTACTTGCCATGTACATTGATttataccttttatttttgtaatggcCGACTTGACTTGCCTGGCACGACAACACTACCCAATCGTTTCACAGATACACAGATGTTTGCTACTAAATATGTAGCGGATAGATTGTTTCGTAATACAACGTGCATCCCTTTGTGATCTGGTCTGCTATTCAGAATCGTATCAGTGCgaaaaacatttattcccaTGTCTTATTCACGGACAAGCAagctaattaattatttgctCTGGCGCCAAATTATTTGCTTCTTTCAAGCTTGTTATTGCAGTATAATAAACTGGTTTCGCATACTTAATTTTGACATAGCATTCCATTTCAGGTTGTTGAACTGAATATTTCTTTGTTAAACTACTAAATGCAACTTAATTATCGGCATTCCCACTTCTCTAATAAAACAACATagggtgattaaaaaaaaaa

Function

GO:      GO:0005097,GO:0032313

KEGG:

id description
K20133 USP6NL; USP6 N-terminal-like protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU41701 lncRNA downstream 223614 12265665 ~ 12268740 (-) True G28130
XR_006250651.1 lncRNA downstream 254217 12236645 ~ 12238137 (-) True LOC122342788
TU41684 lncRNA downstream 337103 12148132 ~ 12155251 (-) True G28117
TU41640 lncRNA downstream 473353 12018609 ~ 12019001 (-) True G28086
TU41644 lncRNA downstream 495051 11997013 ~ 11997303 (-) True G28090
XR_006250594.1 lncRNA upstream 465943 12988707 ~ 13071520 (-) True LOC122342546
TU41980 lncRNA upstream 466112 12988876 ~ 13071153 (-) False LOC122342546
XR_006250593.1 lncRNA upstream 499359 13022123 ~ 13071520 (-) False LOC122342546
TU42001 lncRNA upstream 654197 13176961 ~ 13177984 (-) False tmem110l
TU42027 lncRNA upstream 704936 13227700 ~ 13227947 (-) True G28349
XM_043236767.1 mRNA downstream 3173 12465612 ~ 12489181 (-) True cpm
XM_043238011.1 mRNA downstream 61468 12413786 ~ 12430886 (-) True LOC122343505
XM_043238010.1 mRNA downstream 121184 12279641 ~ 12371170 (-) True LOC122343504
XM_043236853.1 mRNA downstream 495715 11846594 ~ 11996639 (-) False magi2a
XM_043236852.1 mRNA downstream 495719 11841965 ~ 11996635 (-) False magi2a
XM_043236487.1 mRNA upstream 16293 12539057 ~ 12671471 (-) False celf2
XM_043236482.1 mRNA upstream 16293 12539057 ~ 12623400 (-) False celf2
XM_043236504.1 mRNA upstream 16293 12539057 ~ 12623400 (-) False celf2
XM_043236481.1 mRNA upstream 16293 12539057 ~ 12623400 (-) False celf2
XM_043236496.1 mRNA upstream 16293 12539057 ~ 12623399 (-) False celf2
TU41785 other downstream 3198 12481920 ~ 12489156 (-) False cpm
TU41786 other downstream 3198 12482102 ~ 12489156 (-) False cpm
TU41650 other downstream 476587 12014631 ~ 12015767 (-) True G28093
XR_006250735.1 other downstream 946542 11426497 ~ 11545812 (-) False ppfia2
TU41528 other downstream 1068271 11422069 ~ 11424083 (-) False ppfia2
XR_006250598.1 other upstream 794168 13316932 ~ 13361938 (-) False tmcc3
XR_006250597.1 other upstream 794168 13316932 ~ 13361938 (-) False tmcc3
XR_006250596.1 other upstream 801761 13324525 ~ 13361938 (-) False tmcc3
TU42098 other upstream 888860 13411624 ~ 13422539 (-) False G28397
XR_006250767.1 other upstream 1170181 13692945 ~ 13698715 (-) False LOC122343399

Expression Profile