RNA id: XM_043236809.1


Basic Information

Item Value
RNA id XM_043236809.1
length 7078
RNA type mRNA
GC content 0.46
exon number 23
gene id clocka
representative False

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 17582070 ~ 17630822 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTTACTGCTGCTTTCCTGCTGGGTGTTTTCCTGGACGGAGAGAAAgtgcttttattaaaggaacgTAATGAAGACGCAGCGAGTTCGGTTCTTGTGACTGCTGAACCTCGGCCCTGCTTTTACAatttAAGAGCAGATTTACAGTGGTTCAGGATCATTGCTGCTATTACAGAAATAATGACATGAgAGGTGGCTAGTGCTAACATGTGGTGCCTCCAGTCTCACACCCGAATGAAAGCACATACACCCCACAGGGACCCACAGCAGGCTTTTCTACCTTGACCTCCGAATCCTCCGATCGACCCTgcgcataaaaacatttatattcacacGCACCTTCTGTCTTGCCCACTGATTGTCCTCATCCTACATCCTGTGGCAAGCTCCTCTCTTCCTTCCTTAGAGCAGGCAGGCCTGGAGGTTACAAATGTCTACCTCACGCTTAAAGGTCCTCTCTCTACAACTACGACCCTGAACACACTACAAAAATGACCTCAAGCATAGACCGGGATGACAGCAGTATCTTTGATGGGTTGATGGAAGAAGATGAGAAGGACAAAGCAAAAAGAGTTTCTAGGAACAAGTCGGAGAAGAAGAGACGAGACCAGTTCAATGTACTCATCAAGGAACTGGGCACCATGCTGCCAGGAAACACACGCAAGATGGACAAGTCGACCATCCTACAGAAGAGTATCGACTTCCTGCGCAAGCACAAAGAAATTGCCGCACAGTCTGAGTCGAGTGAAATCCGTCAGGACTGGAAGCCACCTTTCCTTAGCAATGAGGAGTTCACACAGCTGATGCTGGAGgcGCTAGATGGCTTCTTTTTGGCCATCATGACAGACGGAAACATAATCTACGTCTCAGAAAGTGTCACGTCTTTATTAGAACATCTACCTTCTGATCTTGTGGATCAGAATCTGTTGAATTTCCTTCCACTGGGTGAGCACTCAGAGGTGTATAAAGCCCTGTCCACACACATGCTGGAGGGAGAGACCCTCACCCCAGACTACCTAAAAACAAAGAACCAGTTAGAGTTCTGTTGCCACATGCTCCGGGGCACGATCGACCCGAAAGAGCCGCCCGTTTACGAGTACGTCAAGTTCATCGGAAACTTCAAGTCCCTCAACACTGTGCCTAACTCAACACGCAACGGCTTTGAGGGAGTGATCCAGCGATCGCTGAGGCCCATGTTCGAAGACCGAGTGTGTTTCATAGCAACCGTGAGGTTAGCCAAGCCTCAGTTTATCAAGGAAATGTGTACTGTGGAGGAGCCCAATGAGGAATTCACCTCCAGACACAGTTTAGAGTGGAAATTCCTCTTTTTGGACCACAGGGCACCCCCCATCATAGGTTACCTACCCTTCGAGGTTCTGGGTACTTCAGGGTACGACTACTATCATGTGGATGACCTGGAGACTCTGGCCAAGTGCCACGAACACTtGATGCAGTATGGTAAGGGGAAGTCGTGTTATTACCGTTTCCTGACTAAAGGTCAGCAGTGGATCTGGCTTCAGACTCACTACTATATCACATACCACCAGTGGAACTCACGGCCAGAGTTCATCGTCTGCACACACACTGTGGTCAGctaTGCTGAAGTGAGGGCTGAACAGCGCAGGGAGCTGGGCATTGAGGAATCACCTCCTGAGATCTCCGCAGACAAGTCTCAGGACTCGGGCTCGGAgtcccagctgaacacctccAGTCTGAAGGAGGCGCTAGAGCGATTCGATCACAGCCGCACTCCCTCGGCCTCCTCGAGGAGCTCCCGTAAATCCTCGTCACACACCGCTGTCTCGGACCCCACGTccACGCAGACCAAGCTACAGACAGACCACAGCACACCCCCCCGCCAATCAGTGTCAGCCATTGAGATGACATCACAGCGGAGGTCCTCCATTAGCAGTCAGTCGATGAGTTCTCAGAACACAGGACAGACGATGGCGACGTCCCTTGTGTCTCAGCCTCAGCAGCCTCAACCACTTCAGCCCAGTGTGCAGCCAGTGCTGCAGTTTTCCACGCAGATGGATGCAATGCAACATCTTAAGGAGCAGCTGGAACAGCGCACACGCATGATTGAGGCCAATATTCAGAGACAACAAGAGGAACTGCGGCAAATTCAAGAGGAGCTGCAGAGGGTGCAAGGCCAGGGCTTACAGATGTTCTTGCAGCCCGGTAGTGGTGGTCTCAACCTGGGCTCAGTGCAGCTGACGCAGGGTTCATCCGTGCAGCCAGGGGGCGCTCTGTCCATGCAGGGGGCGGTGGTGCCGGCGGGGAGCCTGCAGAGCGGCCTGCAGTCCACACACACAGCGACACAACACACTGTCACACAGCATCCTCAGCAGCAGGCACCGCCGCAACAACAGAACCTTCTCAGAGATCAGAGCTCCACTCTAACTCAGCAGTCTCAGAGGTCGTCTCACACATTGCAGTCTCCTCAGGGAGCACTGCCTGCGTCTTTGTATAATACCATGATGATATCTCAGCCGACGCAGGCCAACGTTGTCCAGATCTCCACAAGCTTGGCTCAGAACAGCAGCCCCAGCGGAGCCGCGGTCGCCACTTTCGCACAAGACCGGCAGATACGGTTCCCTGCCGCCCCGCAGCTCCTCACTAAGCTAGTAACCGGCCCAATGGCATGTGGCGCAGTTATGGTGCCTACCACCATGTTCATGGGGCAGGTGGTGACTGCGTTTGCCCCTCAGCAGGGCCAGCCTCAAACGATCAGCATCACCCAGCAGCCGTCTGCGCAGACGCCGGAGCAGCAGGCTCAGACACAGTCACAGACAGCTACAGGAACAGCCCAACAACAAGGACAGGCCCAGGCTCAGCTTGCCCAGCAGCAAACACAATTCCTACAGGCCCCTAGGCTTTTACACGGCAACCAATCAGCCCAGCTGATCCTTCAAGCGGCGTTTCCCCTGCAGCAGCAAGGCACCTTTGCGGCCGCcacgcagcagcagcagcaacaactgcagcagcagcagcagcagcaactgcaacagcagcagcagcagcttcagcagcagcaacaacagcagcagcaacagctgcagcagcaacatcaacagcaacaacagcagctgCAGCATCAGcatcaacagcagcagcagcagctgcagcagcaACTGGCAGCTCATCGCTCAGACAGCATGACGGACCGGTCCAAAGCGCCGCCTCAGTAGCTGACCGCACGTCAGGGACACAACCCTGCCTCCACTGAGCAGTCCTGCAGGCTGAGGGGCTCCTGAGGGGGGATGTTCGGAGCTCAAAACAGCAGTATTTTGTACTGTACCCTCTCAGATACCCTTCCACTGCTTATAGGTGAAGGGCCAGACCTAAACGGGTGTGGCGTTTTCACCCCGTGCCCGTCTCCGACCTATAGGTAGTTGATCAACGGCTGCTTGCACTGAATTCTGGGAGAGGTCCGACCACGAGCTGCGAACTTTCTGCTGGCTGGCGAGGAAACAGCGGCGTCTGGTTTTCCGCAAACTGTGCTCACCACAATAACCGCATCCCCTTTGTCTCGTATGCCCAGTGTGTGCCGTCGTCCCTCTTTCACAGGTTTTAATTTATGCAGAACGAGCCGCAGCGAGGGCTTCAAGACTCGGGAAGAAGTCGCGCAGGACAAACGACGTCTTTCTCTTGGCCTctccttttcttcctctttcctcCTCATTTTACTTGTCGCAAGTAATTATGggtcagaaaatatttttaagaatgtcaCGTGGATTCAACTTTTATTGTACAGTTCACctgtaaaataatgtgtaaatatatggacaaaaggaaagagaaactaatattttatatgatgcATGAGACGAAAAGCCTAGTCTGTTATTTGTAGCTttgaatatactttttttttctaatattcagaggaaaaaagcaaaacttaATACACATAATGGCTGATCTCTTCACAGACTTCCTTTTTCCAGTGGGATgggggtgagtgtgtgtgtgtgtgtgtaagtgcttGCGCACATGTGTTCGTATGTGTgcgcatgcatgtgtgtgtgtgtgtgtgtgtgtctgccaaTGCTGGATCCACAGATCGTGTCACAGTTGGTTTAAAACTCCCTTCGGAACAGGCAATCTTTTGCATCGTGTTATTACCTTAGTAATTgctaaaatatagatatatttcaGAGAGATGTTCTACATTTGTAAATAGTTTAAAGAGAAGGCTTCACGTTTAGTATATCATGCGATTttaggcaaataaaaaaaaaaaaaaaaatgtagggaATGGCGCTTCGACTGTTTAGCGCAGAATCATTGCGGCTGGCAGCGGCCGATGATAGCTACATACTCTGCCGAACTGGAACTGATGCTTAAAAACTGCAGGGTTATGATGAGGAAAAATATAATCGCATAGTGTGTACGATCCTAAAGGATATAGGTAAACTAGCTTAAGGCTAAGCCATAGCTTCCTCTAGTTTTACAATGGTTTACATGGTTGTTTGCACTGTTATACAGTGTTTTAGGCATGATTCATTAAATAGGTTTGACAAACCGGAAATATTTTACACAACCAAACCTGTTTATCATCTAGACATAACAAATTCACATATTTGCACAGCTTTAATGCAGGAATACTTTCACTTGCCTTTCTCGGGTCTCCTCTCGTTGacaagtgatgacatttcaatGATAGCGACTTGACTTTGCAAACCTTCTTCCACTCAGCTCTGGAAAAGCAGGAATGTATCGGTTCACTAGTACCTCTGTAACGCTGACAGTCACTAGAAACTTTTAGCTCTTTGTCCAAAGCACAGAAAACAACCCTGATGTCGACAATCTAATTCTGTTCATTGGCCTCTGTAGGGCTACAATTACTGCAGTCGATTAATTCGATATTAAAAGCGTGTCTTCGGGAGCTTAAAATGTATGCTCACTCTTGACAAGACAGCAGTTGCTAAATTTAAAGCTTGCCCAAAAAGTTGCCCGATGAGACGTCGTTATTAGTTAACCATCATgaatgttcaaaataataaaaaaatatatatatgtttttcctCTATGTGATGGATGCTTATGAAGAAATCttaaacactatttttatttaatttaatttttttattgtaaaagctTAAAGTCACTTTTATCAACAGGTAGCACTTATGGAAAATggtttttgtattgtttgtgttGGTCTTGTTTGACAAGGCCgtgttattaattgtttttaattattattctacTCACCAGAAGTTAGCGCATTGAGCAATATTGCCTCTTCAGGTTAGTGCAAGTAGACGGGTGTAGTTCATTCCAATATATTCAATATCAGAcctcactatatatatacatatatatatgaaagtgcCAGTCTGAATGTTTGGTTTGTGCGGGATGTTAAAGCCAACCACCCGGAGTGCTGGTCCAATCACAGTTCATGTTGCAGTACCCACTCAATAGCAGGATACTCGTGCGATCTACGATAATGCAGTATGTTAATGTAATCCGACTCATCCTGTTGTTCTTCTACCCTTCGAGACGCTCCTGTGGTATATGACGGTCGTTAATGTGTCGGTTTGTGTGGTCGTGTAAAAGTAAAGGATGGTTGCACATTTCAGTACCGCAGAACTTTTATAACGGCACGGCTAGAATGAGCAAGGCGAGATTATGGATTGAATGTAAAACTGTCACGTAGCTTTATAGTaacatttaaagaatattttaaagagGAATATATTGAAAATTAGATGTTCATATTTTTCTACGGCAAGGTCGGAACAGAGAATTTATGCAGATAGACTATAGTTGATGTATAAAACGGCTGTTGTACACCTTTTGCTAGGAAAGGGAACAGAAAATTAAGCTCACTCCCATATCGTAACCTCAAATGAAGGATTTAAACAAACTGTGACACACTGGAGGACCGGTTGAACTTTCTCCCTTCGATGCAGTTGGATTAGGAAGTGGTTGTTTTAAGGTTTATGCCCGAGTAAGAGAGGTCTTTGATGTTTGCTACAGACTCCTGCTTATGTTTTGGGGTACTTGAaggtaatacatttttttttttgttgttttttttttaaagaaattttgcTTAAAAAGTATAGGACACCTATACAAATTCAGGCTGGGTCGAAAATGACCTTCTGATGCATAGTGCATCCTCTGGAACCGGCATCAGATGTCAGATGTTGACGCGTGATGATGTTTTAGAGTACAAGgggttgtttttctgttttctgcacTGATTTGTATCACGTCAGCCCCAAGGTAACAGAAATACTACAGCTTCCTCAGGTTGgttcagaataataataataataaaccctCATCAATCTCGCCCCTCCTTTCTCTTCCTCACTTGATCTTGTGATAGTGACCTCTTCAATAACACATTCTTctgcgttcacacacacacacacacacacaaacaggacGATACAAAATGGTTGCTCTCTATATGTACCTCTGAATTGTCTGTGGTGCTCGATGCAACTCCACGTCAACTGGGGTTTTAACCCAAAGAGCTCTGAGAAAAGATGGGAGAACATGGCAAAATCCTGttgaaatttttttgtttttttttaaatattaaaagcgcCCAGTGGAAAAGGGGGTGGTGAACCATGTTAAATGTTCTGTAGTTCTGATGTACGCACTAGAAGTTCTGAATGTCTATCAGTGTTCTCTTGCTATCATTTAATCTTTGTATGTGTGATGTTCTTTGCAGAGCACTTGTGTTTGGCTCATGAAATTTATCTGATCAGTACACGTTaatatggaggaaaaaaaatagctaattatttaattataccTATAATTAGGTTTAAGCTTTCACCATTTGCTAGGTTTCGTCAAATTGTAATGCTCCACCAGGGGCTGCTAGAGCATAGCTCTGTtttcctaaaaaataaaaaataaatctgtaatatcAGAAAAAAGTGTGCTGTATTGGGTTCATTTTGTGAGCCAGGCCATTCTTACATTTAACAAAGAAATAATGGAacctttttaaacaaacagtgCCGTTTACTCCCCTTAttcaattttgaaaataaaattatttaaaaatatatatataaatatatatatatatatatacata

Function

GO:

id name namespace
GO:0009266 response to temperature stimulus biological_process
GO:0032922 circadian regulation of gene expression biological_process
GO:0009648 photoperiodism biological_process
GO:0045893 positive regulation of transcription, DNA-templated biological_process
GO:0007165 signal transduction biological_process
GO:0005634 nucleus cellular_component
GO:0005667 transcription regulator complex cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003677 DNA binding molecular_function
GO:0004871 obsolete signal transducer activity molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0046982 protein heterodimerization activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU43359 lncRNA upstream 52884 17553833 ~ 17554190 (+) True G29272
TU43253 lncRNA upstream 221394 17385289 ~ 17385680 (+) True G29200
TU43244 lncRNA upstream 312434 17294375 ~ 17294640 (+) True G29192
TU43233 lncRNA upstream 386458 17220257 ~ 17220616 (+) True G29181
TU43230 lncRNA upstream 387560 17219142 ~ 17219514 (+) True G29178
XR_006250563.1 lncRNA downstream 36328 17667150 ~ 17669761 (+) True LOC122342426
XR_006250674.1 lncRNA downstream 79233 17710055 ~ 17711711 (+) True LOC122343158
TU43407 lncRNA downstream 107245 17738067 ~ 17739667 (+) True G29305
TU43408 lncRNA downstream 114706 17745528 ~ 17746317 (+) True G29306
TU43425 lncRNA downstream 186724 17817546 ~ 17817933 (+) True G29317
XM_043237592.1 mRNA upstream 28270 17565453 ~ 17578804 (+) True nmu
XM_043237591.1 mRNA upstream 28270 17565453 ~ 17578804 (+) False nmu
XM_043237590.1 mRNA upstream 28270 17565453 ~ 17578804 (+) False nmu
XM_043237593.1 mRNA upstream 28270 17565453 ~ 17578804 (+) False nmu
XM_043236628.1 mRNA upstream 116779 17484898 ~ 17490295 (+) False LOC122342653
XM_043236807.1 mRNA downstream 13613 17644435 ~ 17665897 (+) True kdr
XM_043237278.1 mRNA downstream 175018 17805840 ~ 17811463 (+) True LOC122343009
XM_043237493.1 mRNA downstream 270619 17901441 ~ 17902917 (+) True oxt
XM_043237498.1 mRNA downstream 281617 17912439 ~ 17915594 (+) True fabp1a
XM_043237496.1 mRNA downstream 281619 17912441 ~ 17915435 (+) False fabp1a
TU42966 other upstream 1132693 16473898 ~ 16474381 (+) True G28982
TU42861 other upstream 1621348 15985219 ~ 15985726 (+) True G28899
TU42853 other upstream 1765219 15841372 ~ 15841855 (+) True G28891
TU42722 other upstream 1951893 15650295 ~ 15655181 (+) True cdkn1d
TU42701 other upstream 2051392 15439334 ~ 15555682 (+) True G28806
TU43729 other downstream 669593 18300415 ~ 18301189 (+) True G29526
TU43756 other downstream 805638 18436460 ~ 18461317 (+) True G29545
TU43926 other downstream 1252357 18883179 ~ 18886402 (+) True G29642
TU44195 other downstream 1659398 19290220 ~ 19342911 (+) True G29814
TU44225 other downstream 2100440 19731262 ~ 19786128 (+) False G29835

Expression Profile