RNA id: XM_043236824.1


Basic Information

Item Value
RNA id XM_043236824.1
length 1809
RNA type mRNA
GC content 0.38
exon number 2
gene id LOC122342755
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 3400380 ~ 3402341 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

gtctgtggagggtcagagagctctccaaaaatattttaatctgtgTTATGAAGGTTGTTGTGGATGAATCTTATGGATAGAGGCAAAAAGGAGACCAGAAGTGCGAGGTGAGATGTGcagaaaacatcaaaacatccaTGGGTCAGAAAAATAGCACCCCGTTAGACTTTGCTTGAACTGTAATATGCACTTGGAACTTgacaaagagtccaaagacatgaaaggtcatttatattcatttgacAGAAATTTACTGTTTACACAAAAGCAGTAGTGCTACTGTAAATAAAGCCAGATTTCTCGAATGTGCTGCAGATATTTTAATAAGCCTAAATTATCATACAGTATGcacatttttcagaatatataacataacatgtACAGAGTTTTACACTAGACATAATTAACATAACCCAACACATATTACACACAACCCTTCCCAGCCtcataataaatgaatgttttatgtgcatgtgtgagaaAAGAGGAAACATGCCCCATATTCTGTGAATGGTCGTGGAGAAGCTCTGTGAccaagatgaacgaaggtcttacaggtttcaACGACATGAAGGTCATTAATggcatcatttttaatttttaagacatGCGGAGTGGGTGGATTATTGTAGGGTGGTTGTGTTCACACATTGACAACGCAGATTTATGTCTAAACACCatgaaaaaagtgaattttgcataataggtgcactttaaataaaagaagaaaaatcattAATGGATGATGCTTGCCTGTTTATCAAGTAGTACAAATGTGTATgttaatatgcaataaaactgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttatatatatatgctttacatatttgtttgtattttcagCAGTATCAGCAGGAAGAAGAGATCAGAATCTGCAGGACCCAGCTCTGTGTCTAATAATAGTATAAAGTCTATACATAGACCTCCTTCATTCAGTGATGAAACATAtaaagaGATAGATAATCCAACTGCAATCCACGATAAAACCCACAACAGGCAGAAAAGACCTGAAGAAGTCCTGCAGAGAGTCAAAGACCAACACAAAATCAGCATGAAGAACAAGTATGAACACTTATTTGAGGGAAACAAACTACAAGGAAATGAAACCCTCTTGAACCGGATCTTCACAGACCTCTACATCatagaaggagagagagaagggatgaatgaagaacatgaggttttacagatggagaaaacacCCAGAAAACAACACTCACAACACAATCCAATCAACTGTAATGACATCTTTAAATCATTACCTGACTCAAGATGtgaagagaaagacaaaatcaagactgttcttactaaaggaATTGCTGGAATTGGAAAAACCGTCTCTGTTCAGAAGTTCATTCTAGACTGGGCCgagggaaaagccaatcaggatgtagatttcatgtttgtgttttcatttcgagagctgaacttgattaaagatcatcagtacagtcttcacagacttctgctGGACTTTCATCCTGAGCTTCTAGACCTGGGCTCAAAGATTTATGAAGAATGTAAAGTGGTGTTCATCCTAgatggtctggatgaaagcagaatgacactgatgttttcagatgatgaGAAGGTTTGTGATGTGAATGAATTTTCCTCAGTGGGTGTGTTGATGTTGAACCTCATAAAAGGAGATCTACTTCCCtgtgctctcatctggatcacctccagaccagcagcagccagtcAGATCCCATTCAAAAATATTGTCGTGTAACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006250572.1 lncRNA downstream 280830 3117479 ~ 3119550 (-) True LOC122342458
XR_006250573.1 lncRNA downstream 283083 3116404 ~ 3117297 (-) True LOC122342459
TU38062 lncRNA downstream 388166 3006770 ~ 3012214 (-) True ccdc3a
TU38074 lncRNA downstream 403922 2980159 ~ 2996458 (-) True G25625
TU37715 lncRNA downstream 862922 2535072 ~ 2537458 (-) False LOC122343423
XR_006250643.1 lncRNA upstream 483 3402824 ~ 3403502 (-) True LOC122342758
XR_006250642.1 lncRNA upstream 14246 3416587 ~ 3417917 (-) True LOC122342757
XR_006250584.1 lncRNA upstream 40081 3442422 ~ 3444891 (-) False LOC122342503
XR_006250583.1 lncRNA upstream 40081 3442422 ~ 3444684 (-) True LOC122342503
TU38181 lncRNA upstream 244722 3647063 ~ 3701306 (-) False G25706
XM_043236825.1 mRNA downstream 44239 3354369 ~ 3356141 (-) True LOC122342759
XM_043236381.1 mRNA downstream 305975 3027071 ~ 3094405 (-) True wnk1b
XM_043237574.1 mRNA downstream 375555 3024248 ~ 3024825 (-) True LOC122343240
XM_043236920.1 mRNA downstream 378868 3019092 ~ 3021512 (-) True LOC122342805
XM_043237663.1 mRNA downstream 382169 3017632 ~ 3018211 (-) True LOC122343283
XM_043236169.1 mRNA upstream 116348 3518689 ~ 3520928 (-) True LOC122342398
XM_043236172.1 mRNA upstream 119353 3521694 ~ 3526313 (-) True LOC122342400
XM_043236171.1 mRNA upstream 125694 3528035 ~ 3531141 (-) False LOC122342399
XM_043236170.1 mRNA upstream 125694 3528035 ~ 3531141 (-) True LOC122342399
XM_043236951.1 mRNA upstream 128873 3531214 ~ 3532749 (-) True LOC122342818
TU38086 other downstream 378923 3021062 ~ 3021457 (-) False LOC122342805
XR_006250644.1 other downstream 1024664 2302327 ~ 2375716 (-) False dock4b
XR_006250645.1 other downstream 1024664 2304346 ~ 2375716 (-) False dock4b
XR_006250653.1 other downstream 1311801 2042953 ~ 2088579 (-) True cald1a
TU37444 other downstream 1497813 1901843 ~ 1902567 (-) False rsph9
TU38175 other upstream 132496 3534837 ~ 3547467 (-) False LOC122342819
TU38177 other upstream 145885 3548226 ~ 3577096 (-) False LOC122342819
TU38193 other upstream 198659 3601000 ~ 3601974 (-) False LOC122342822
TU38194 other upstream 200017 3602358 ~ 3604270 (-) False LOC122342823
TU38442 other upstream 862585 4264926 ~ 4267495 (-) True G25880

Expression Profile